Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_01g0040310 | OGI:01111100 | 15/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr01:38921702-38922367 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcagaagctaatcacagtacactcgaccctgctcgacgcctccacgagcttaagcgcgagcgggcacctcgcggacagcatggtcgccgacgtggtcatcagcccgccgtacttgtaccgcacggcgccgagaacccacagggtcaccgggaacacccccgtgtggttgtcttcaccaaacgcgccggcgtcccaggacaccacgcccgagctccccacgagcacggcgcgcaccgcgtcggcgcgcctcccgccctggtacgacagcggcagcgcggcggcgccgaagcgcagcccccggtagaaaccatccgccgacagcacgtcgtagtagacggccgtccgcctgctcgggttccggatggtcaggccggcggtgaggttgaaggagagcaccggccgggggttcgccgtcgtgttcagggcgaagcgggagagcgtcgcggcgtccacggccacctggatcgcccgcggccggtagatgagccagacgaggacggcgacagcgacgacgacggtgcaggcggcgatgaatgccctgaccaggacgcggaacgcgctgggccggcggcgctggggatgcagcgccgccggctgagcctgagggtacgggggaggatcgccgccgccgtgctcgacgtggagttcttgtcccgagtagtacat
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| CDS seq | atgtactactcgggacaagaactccacgtcgagcacggcggcggcgatcctcccccgtaccctcaggctcagccggcggcgctgcatccccagcgccgccggcccagcgcgttccgcgtcctggtcagggcattcatcgccgcctgcaccgtcgtcgtcgctgtcgccgtcctcgtctggctcatctaccggccgcgggcgatccaggtggccgtggacgccgcgacgctctcccgcttcgccctgaacacgacggcgaacccccggccggtgctctccttcaacctcaccgccggcctgaccatccggaacccgagcaggcggacggccgtctactacgacgtgctgtcggcggatggtttctaccgggggctgcgcttcggcgccgccgcgctgccgctgtcgtaccagggcgggaggcgcgccgacgcggtgcgcgccgtgctcgtggggagctcgggcgtggtgtcctgggacgccggcgcgtttggtgaagacaaccacacgggggtgttcccggtgaccctgtgggttctcggcgccgtgcggtacaagtacggcgggctgatgaccacgtcggcgaccatgctgtccgcgaggtgcccgctcgcgcttaagctcgtggaggcgtcgagcagggtcgagtgtactgtgattagcttctga
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| Protein seq | MYYSGQELHVEHGGGDPPPYPQAQPAALHPQRRRPSAFRVLVRAFIAACTVVVAVAVLVWLIYRPRAIQVAVDAATLSRFALNTTANPRPVLSFNLTAGLTIRNPSRRTAVYYDVLSADGFYRGLRFGAAALPLSYQGGRRADAVRAVLVGSSGVVSWDAGAFGEDNHTGVFPVTLWVLGAVRYKYGGLMTTSATMLSARCPLALKLVEASSRVECTVISF |
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| Function | NDR1/HIN1-like protein 3 [UniProtKB/Swiss-Prot:Q9FNH6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0040310 | OsLima_01g0040310.01 | Chr01 | 38921702 | 38922367 | - | NAM | ||
| CDS seq | atgtactactcgggacaagaactccacgtcgagcacggcggcggcgatcctcccccgtaccctcaggctcagccggcggcgctgcatccccagcgccgccggcccagcgcgttccgcgtcctggtcagggcattcatcgccgcctgcaccgtcgtcgtcgctgtcgccgtcctcgtctggctcatctaccggccgcgggcgatccaggtggccgtggacgccgcgacgctctcccgcttcgccctgaacacgacggcgaacccccggccggtgctctccttcaacctcaccgccggcctgaccatccggaacccgagcaggcggacggccgtctactacgacgtgctgtcggcggatggtttctaccgggggctgcgcttcggcgccgccgcgctgccgctgtcgtaccagggcgggaggcgcgccgacgcggtgcgcgccgtgctcgtggggagctcgggcgtggtgtcctgggacgccggcgcgtttggtgaagacaaccacacgggggtgttcccggtgaccctgtgggttctcggcgccgtgcggtacaagtacggcgggctgatgaccacgtcggcgaccatgctgtccgcgaggtgcccgctcgcgcttaagctcgtggaggcgtcgagcagggtcgagtgtactgtgattagcttctga
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| Protein seq | MYYSGQELHVEHGGGDPPPYPQAQPAALHPQRRRPSAFRVLVRAFIAACTVVVAVAVLVWLIYRPRAIQVAVDAATLSRFALNTTANPRPVLSFNLTAGLTIRNPSRRTAVYYDVLSADGFYRGLRFGAAALPLSYQGGRRADAVRAVLVGSSGVVSWDAGAFGEDNHTGVFPVTLWVLGAVRYKYGGLMTTSATMLSARCPLALKLVEASSRVECTVISF
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0864300 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g64480 | RBH | 0.0 | 0.0 | 0.124485 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0864300 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0041360 | RBH | 0.0 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0040890 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0041270 | RBH | 0.316176 | 0.332537 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0040740 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0040290 | RBH | 1.269950 | 5.184824 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0615900 | RBH | 10.264758 | 32.7517105 | 3.7653665 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0039970 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0614700 | SBH | 0.0274645 | 0.0874345 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0031230 | SBH | 0.141751 | 0.373682 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0040280 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0040520 | RBH | 0.0 | 7.503061 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0040480 | RBH | 0.129671 | 3.903471 | 1.344202 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0040340 | RBH | 0.0 | 2.040716 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G040790 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0040460 | RBH | 0.0 | 0.0 | 0.0 |
