Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_01g0039500 | OGI:01109180 | 14/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr01:38270763-38274600 | ||||||||
| Gene Symbol | PT22, OsPT22 | ||||||||||
| DNA seq | tcaagattttgatcatagcaactgcgatgcatgatagcttctaactgtgaatcaaagagagtacttaacaaccctacagtgggGCcaattcgaccattatatcccttatatcacacccttcatttgcgtgtatggctaGtcaacgagacttctctcatctctctctctctctctctctctctctctctctctctctctctctctcagctattccccatgcgggaattctaatttttAacagaaggaaactgaaaatccttgcaattcgttggatctttaaagccatccacatgttgtggcatttacaaagtcgaaggtgccctatgaggctatgactgttgagtcattttttctattaactataaaactataaaggactaaaacgtattccatctactttccatttAaaaacttgacaaccctcatcaaaccgtgcttgattccaagcttaattcTtgtcaagtgccaatcattttcagatctctacaactaatattaccacacctatccttgactcacattttggactctccagtcattagttctgtgtaactgcttcagctatccttgactcacattttggactctccagtctccatagtacgaaaactcgaatgatcacagtagctggttccattttttcttcactgctacccctactaaatggaagcacaatgccataatcggtagacgtcataactctgtttgcttgtgtgtgcatggagctttccaatagcataccagaagatgatggcacataattctccaaccaatcatcatattctaggatagcaactgtagattttctcttaggcgctagccagtgccatcaaaatcaacacgctctccagtagcaaatatatcccagaacagtgtgctactgaagtatagaagagatgttaatattaaaaatccacggaaagaacccatccgatcgacaaagaaacctgctccaacagttcctaaaatggcagcaaatgttccagctgtatttgacattcctGtaaatAaaaaatcatcgattaaacacttaattctgacagaataaagtgcataacaaaagcaacgagtgaacatatttAttaccatgtagcactccagcatattgtggagcaatctcctgataaaagtttaggaatgaattgtatcagagggtaaaagagaatccaaattgagggggaaaacagaaaagattcatatagtacatggcataacgagtgtaaaatacctgaagatttactagaaaacctgagtgaccaaaggacttcaaacctacagcggtagtaagccaagcagaagcgatgactggactctttgctgcatttagtccaagaagagccacaccaggacccacaaagccaattgtctgcaaaaggcatagtaaatagtcaacttgagcttcattagaggcaaattggataaacgttcattactgattaaaacaaacaaattgccaatatcacagaaaatgacatttcTtttttataaaacagcagtatggcttaccaatgtgagaaaggtgacatggatacttcattagttatGggtttatttaataaaggttcaatcaagaGaaaagaggtatcttggtagaacaaattattcatgaggtttcacctatgtcagtaattgagtagtgtaaaacaaattatgttactttaagcatagcatattatgtgttacattctatacgaatgtggaggtgcacccacgaccatataaatgacataaatgaaaattatacatatcaccctccatttatataacctgaaattattcaacagcccacctgcattatcttccgagtcaaagtgatgcttgtaccattttggataagcctgtctgatacaacaccagcaacatagcctaaaactgccatcatgacccaGgggagtgcactaaaccatgcagcttctctcagaTtaacatgatatatctgatcaccatcgatagcagattagcagtattacaaaaatgttgggagatttttaattttctttattcagcactctgaaactgaatgaggacttactgttttgaaatacactggcatccatgaaagaatgacaaaataaccctgaaaaATatagcacagcacttaagaaattatcttaaatgaataaataatgcttttgacgtgacagaaccaaaccaataaaagtgtgtttAtaggagttacccaactatgcatagcatttgcagaaattaaagcccatgttggccatttagagagtagcttgctgaaaggagggacctttcgtaatctttcacctccagattgagtttttaccaatttctgacccctggttatatAatctagttcatgtgctgatatttgcgcattttcacctggagtccctgatatagcagatatccacaccaacacccatagaaatccaaataatccaaatatcacaaatggtccaaaaattccagctcgtgacatgatgataggggaaagaagtaaaccaatggtattgccaagctgaaaaccagccattgcaatcccgacagcacttgatcgctctgtgcgaggaaaccacctataagaaaagacttgaaccaattagtttcctaaacagggcagcaatgcaaacacataatattaggttgtggcgaaaacgtgaagattgataaatgatcAaaagaaatacctcaacaccatgttgttcatacttgggagtgccaccccttctgccatacccagcagaactctagttgagaggaacaaccagagagagcgagcagctgcccaaGgggagaggaatgtagccaaggaccatagagccacgccataagccataactcgctttccgccatagtagtcgaccagtgctccaccaattattggtgacaccagataaccccaaaggaaggatgactgtttggagtgtcaacaattcattaactcggtgatatcaccatactgtacagataggatgcatagaaaccattggtagttcatgctacttcctcaaatgcgacattatttatactagaatgcttgattgtctcaagttctcttgaagaaataaaatgatgatattaagaatgaagtttaaaacgattgactaaactaaactgacAaagaaaaaaaaatcttcctcctccatttgaaggAaatgaactaaatttacagtagccacagcatcattAaaccttaactgtttgcacctgattatatgaccgcatcattaaatgaataacattgtatttcaatctttctaacatcagcacacattctatgacgacccgtgtatgtgcatctgtacctgcagccaaacaaatgtagacagaattgactaaagctggggagggacctgcacgacgccggcgaaggacggggtccatccgtacgcctgcgacagcggcacgatggcgacggacatgacgacgcggtcggcgttgcagagcgcgagagccagccccagcatcgccgccaccttcaccctctcggacgtcacgaactccgccaacaccgcctgggcctcggctccgccgccgggcgaagCcccaggaagcgacgtagcgggaggaggcggcctggacagacgccggggaggcgcaaagggaagtggatgcgccggcgggaggcggccgtgcggcagccatgtaggcggaggtagcgccctgccgaggaccagagtagggaggcggcggcggcggccggagacgaagggaggagcggaaaggggcaggagcgagcgggccaaGgggagcagttggcccggaggagccatcccttccttcgtcctctccggcgaaggggaagccggcggaGggagcggaagtgatggatgattccgatgaagtggattggtggagtgacgtgtcagat
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| CDS seq | atggctcctccgggccaactgctcccCttggcccgctcgctcctgcccctttccgctcctcccttcgtctccggccgccgccgccgcctccctactctggtcctcggcagggcgctacctccgcctacatggctgccgcacggccgcctcccgccggcgcatccacttccctttgcgcctccccggcgtctgtccaggccgcctcctcccgctacgtcgcttcctgggGcttcgcccggcggcggagccgaggcccaggcggtgttggcggagttcgtgacgtccgagagggtgaaggtggcggcgatgctggggctggctctcgcgctctgcaacgccgaccgcgtcgtcatgtccgtcgccatcgtgccgctgtcgcaggcgtacggatggaccccgtccttcgccggcgtcgtgcagtcatccttcctttggggttatctggtgtcaccaataattggtggagcactggtcgactactatggcggaaagcgagttatggcttatggcgtggctctatggtccttggctacattcctctcccCttgggcagctgctcgctctctctggttgttcctctcaactagagttctgctgggtatggcagaaggggtggcactcccaagtatgaacaacatggtgttgaggtggtttcctcgcacagagcgatcaagtgctgtcgggattgcaatggctggttttcagcttggcaataccattggtttacttctttcccctatcatcatgtcacgagctggaatttttggaccatttgtgatatttggattatttggatttctatgggtgttggtgtggatatctgctatatcagggactccaggtgaaaatgcgcaaatatcagcacatgaactagatTatataaccaggggtcagaaattggtaaaaactcaatctggaggtgaaagattacgaaaggtccctcctttcagcaagctactctctaaatggccaacatgggctttaatttctgcaaatgctatgcatagttggggttattttgtcattctttcatggatgccagtgtatttcaaaacaatatatcatgttaAtctgagagaagctgcatggtttagtgcactcccCtgggtcatgatggcagttttaggctatgttgctggtgttgtatcagacaggcttatccaaaatggtacaagcatcactttgactcggaagataatgcagacaattggctttgtgggtcctggtgtggctcttcttggactaaatgcagcaaagagtccagtcatcgcttctgcttggcttactaccgctgtaggtttgaagtcctttggtcactcaggttttctagtaaatcttcaggagattgctccacaatatgctggagtgctacatggaatgtcaaatacagctggaacatttgctgccattttaggaactgttggagcaggtttctttgtcgatcggatgggttctttccgtggatttttaatattaacatctcttctatacttcagtagcacactgttctgggatatatttgctactggagagcgtgttgattttgatggcactggctag
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| Protein seq | MAPPGQLLPLARSLLPLSAPPFVSGRRRRLPTLVLGRALPPPTWLPHGRLPPAHPLPFAPPRRLSRPPPPATSLPGASPGGGAEAQAVLAEFVTSERVKVAAMLGLALALCNADRVVMSVAIVPLSQAYGWTPSFAGVVQSSFLWGYLVSPIIGGALVDYYGGKRVMAYGVALWSLATFLSPWAAARSLWLFLSTRVLLGMAEGVALPSMNNMVLRWFPRTERSSAVGIAMAGFQLGNTIGLLLSPIIMSRAGIFGPFVIFGLFGFLWVLVWISAISGTPGENAQISAHELDYITRGQKLVKTQSGGERLRKVPPFSKLLSKWPTWALISANAMHSWGYFVILSWMPVYFKTIYHVNLREAAWFSALPWVMMAVLGYVAGVVSDRLIQNGTSITLTRKIMQTIGFVGPGVALLGLNAAKSPVIASAWLTTAVGLKSFGHSGFLVNLQEIAPQYAGVLHGMSNTAGTFAAILGTVGAGFFVDRMGSFRGFLILTSLLYFSSTLFWDIFATGERVDFDGTG |
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| Function | Probable anion transporter 3, chloroplastic [UniProtKB/Swiss-Prot:Q8W0H5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0039500 | OsLima_01g0039500.01 | Chr01 | 38270763 | 38274600 | - | NAM | ||
| CDS seq | atggctcctccgggccaactgctcccCttggcccgctcgctcctgcccctttccgctcctcccttcgtctccggccgccgccgccgcctccctactctggtcctcggcagggcgctacctccgcctacatggctgccgcacggccgcctcccgccggcgcatccacttccctttgcgcctccccggcgtctgtccaggccgcctcctcccgctacgtcgcttcctgggGcttcgcccggcggcggagccgaggcccaggcggtgttggcggagttcgtgacgtccgagagggtgaaggtggcggcgatgctggggctggctctcgcgctctgcaacgccgaccgcgtcgtcatgtccgtcgccatcgtgccgctgtcgcaggcgtacggatggaccccgtccttcgccggcgtcgtgcagtcatccttcctttggggttatctggtgtcaccaataattggtggagcactggtcgactactatggcggaaagcgagttatggcttatggcgtggctctatggtccttggctacattcctctcccCttgggcagctgctcgctctctctggttgttcctctcaactagagttctgctgggtatggcagaaggggtggcactcccaagtatgaacaacatggtgttgaggtggtttcctcgcacagagcgatcaagtgctgtcgggattgcaatggctggttttcagcttggcaataccattggtttacttctttcccctatcatcatgtcacgagctggaatttttggaccatttgtgatatttggattatttggatttctatgggtgttggtgtggatatctgctatatcagggactccaggtgaaaatgcgcaaatatcagcacatgaactagatTatataaccaggggtcagaaattggtaaaaactcaatctggaggtgaaagattacgaaaggtccctcctttcagcaagctactctctaaatggccaacatgggctttaatttctgcaaatgctatgcatagttggggttattttgtcattctttcatggatgccagtgtatttcaaaacaatatatcatgttaAtctgagagaagctgcatggtttagtgcactcccCtgggtcatgatggcagttttaggctatgttgctggtgttgtatcagacaggcttatccaaaatggtacaagcatcactttgactcggaagataatgcagacaattggctttgtgggtcctggtgtggctcttcttggactaaatgcagcaaagagtccagtcatcgcttctgcttggcttactaccgctgtaggtttgaagtcctttggtcactcaggttttctagtaaatcttcaggagattgctccacaatatgctggagtgctacatggaatgtcaaatacagctggaacatttgctgccattttaggaactgttggagcaggtttctttgtcgatcggatgggttctttccgtggatttttaatattaacatctcttctatacttcagtagcacactgttctgggatatatttgctactggagagcgtgttgattttgatggcactggctag
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| Protein seq | MAPPGQLLPLARSLLPLSAPPFVSGRRRRLPTLVLGRALPPPTWLPHGRLPPAHPLPFAPPRRLSRPPPPATSLPGASPGGGAEAQAVLAEFVTSERVKVAAMLGLALALCNADRVVMSVAIVPLSQAYGWTPSFAGVVQSSFLWGYLVSPIIGGALVDYYGGKRVMAYGVALWSLATFLSPWAAARSLWLFLSTRVLLGMAEGVALPSMNNMVLRWFPRTERSSAVGIAMAGFQLGNTIGLLLSPIIMSRAGIFGPFVIFGLFGFLWVLVWISAISGTPGENAQISAHELDYITRGQKLVKTQSGGERLRKVPPFSKLLSKWPTWALISANAMHSWGYFVILSWMPVYFKTIYHVNLREAAWFSALPWVMMAVLGYVAGVVSDRLIQNGTSITLTRKIMQTIGFVGPGVALLGLNAAKSPVIASAWLTTAVGLKSFGHSGFLVNLQEIAPQYAGVLHGMSNTAGTFAAILGTVGAGFFVDRMGSFRGFLILTSLLYFSSTLFWDIFATGERVDFDGTG
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0039500 | OsLima_01g0039500.02 | Chr01 | 38271019 | 38272128 | - | IsoSeq | ||
| CDS seq | aattggctttgtgggtcctggtgtggctcttcttggactaaatgcagcaaagagtccagtcatcgcttctgcttggcttactaccgctgtaggtttgaagtcctttggtcactcaggttttctagtaaatcttcagattgctccacaatatgctggagtgctacatggaatgtcaaatacagctggaacatttgctgccattttaggaactgttggagcaggtttctttgtcgatcggatgggttctttccgtggatttttaatattaacatctcttctatactt
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| Protein seq | NWLCGSWCGSSWTKCSKESSHRFCLAYYRCRFEVLWSLRFSSKSSDCSTICWSATWNVKYSWNICCHFRNCWSRFLCRSDGFFPWIFNINISSIL |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr01 | 38271879 | 38271991 | - | OsLima_01g0039500.01 | OsLima_01g0039500.02,OsLima_01g0039500.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.050229 | 0.021398 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0852200 | RBH | 2.884460 | 2.517078 | 5.877992 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g63290 | RBH | 1.687659 | 1.552310 | 1.322383 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0852200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0040510 | SBH | 0.541828 | 3.318347 | 4.725391 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0039990 | RBH | 0.234859 | 2.073362 | 2.699215 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0040390 | RBH | 0.341252 | 1.949657 | 4.874898 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0039860 | SBH | 0.156727 | 0.375234 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0039460 | RBH | 9.086469 | 5.205657 | 16.828754 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0605100 | RBH | 6.3399155 | 12.1089555 | 14.1148685 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0039140 | RBH | 0.495401 | 0.360606 | 1.365305 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0603700 | RBH | 7.537712 | 19.9180585 | 14.4297555 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0019090 | RBH | 0.097303 | 0.081109 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0039440 | RBH | 0.736232 | 8.150280 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0039680 | RBH | 3.791923 | 10.326721 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0039650 | RBH | 1.165182 | 0.624170 | 0.950555 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0039540 | RBH | 0.300418 | 4.670069 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G039990 | RBH | 0.191122 | 1.442045 | 1.473853 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0039670 | RBH | 0.213753 | 5.967457 | 4.986994 |
