Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_01g0037480 | OGI:01105340 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr01:36768234-36770567 | ||||||||
| Gene Symbol | PUB3, OsPUB3 | ||||||||||
| DNA seq | TGAAACAAATACTTTCTATCTTCGTTTATCTTTCGAGAAAAGAAAGGGCGCAATTTGAGTTGGAATTGGAGGGGATTACATTGGACTGAAGCTCGTATGCACAGTTGATCAAACACTCACCATTATCTCTCGGAGCAAAGAATCGTGACAGCCTaaaaaagactctgtacagcaagaaggggggaaaattatgtttctgaacttatcctacgaggcaagttgtgattggttttcacgaagccatcatggcagggggcaccacggtggcaacggggcaaccaccgcctcgctccccgtcggcggcggaggcggctgcccaccgccggcatatccggccgagcgaggcggccttccgccgggcgcgctccgtgccgatgctcatcagctcccagatcgcccattccacgccgggcacggccatgacctgggtcaccgccggcgcgcccaggcgccggcagagcagcacgagcgccgccgtggcgttctccctggcccagtccgtgccgcgcctcatttccgccacgagacgcgccacggcgccgtcgatgttgacgatcgcctccgcaccgccgcgcttggccagcgcggcgagcaccgccgcggcggtctcctccttgctaatcgctgacagcgccacctcggcgacgcctgcgtcaacgagcttgccgacgttctccctctcgccggccagcgtcagcagcgcggccaatgcgtccttctttgtgctcgacgggccggtgcgcacgagatgcactaatttctccacgacggattggttcctgccgagcctgcggcggtaggaatgcacggacgccaagctgagcacggcggcggcggcgttctccttggcgcgccacgtcgcgccggagctcatgatatgggcgaccgcctcgacggcgccgtcggcgtgcatgatgcgcttcttgttggcctcgaggatggagagattaagcagcgccgtgacggcgttgagctggagccctgcatcctcggagtagagcaggggcacgagcagaggcacggctccggcctctccgacgaacgctcggttctccgagccggacttggatagcagccggatctcgtgcacgacgcggttggcggcatctggggagaaggagacggacagcttcttcacaaggaacgacgccgtcatgcgcgccgcctcgagcgcggccttgttggcggccaccgcctgggcctgctcgctcttgctcgcctcgcaggcttccatggcgacgccgttctcccggcaccacttggagatgaggttcttgagggccttgttcgacacgagctccagattggccaagacctgccctgtcttggggcacgttgacttgccggagctgaaccaccggtcgatcgactcgcgatcgtacgtctggccgctcgcgacgacgacggggtcgcgcattagatcgagagagattgggcaccggaagtccgacggcggcaccgggggctcgccgtcttcagcctcgacgtcagccttggaattggaatctgaaggccgaggcgtggcgctgaacaggacgcacttggcataccggaggaggccgacgagagcgatcatggaggccgtccatttctccgaggcacggtcgccgatctcctgctccaggctctcgatctcctcgctgcagctcgccgggtcgttgatgccgacctccaccagCCGGCACGATCTCCCGCTCGATCTCTTGTATCAGCGACAGCACGCTCGCCTTCAGCGCCTCCTCCGACTCCGGTGCCGGCGAGCACCGCCGGCACTGGCGCGACGCGAGGGCGAGGACGTCGAGCACGTCGTCGGCGAGCCCCAGCTCGACGACCGGCAACAGGTCGAGCAGCGTGGCCAGGTCGTGGTTGAGCTCCCGCAGCTCCGCCTCCATCTCGTCGGACTCCAGCAGCAGCCGCATCCGGCTGCGCGCCGAGCAATCGGCGACGATCGCCTTGAACCGCTGCAGCACCAGGAGCACCTCCCGCAGGCACAGCGACGCCGACCGCGGCAGCTCCCCCGCGGCGCCGCACAGCAGCAGGTCGTCGAACGCGGCCGGccagtagcttggaccgcctcgagatggacgcgaacgcggcgcgcaggaacggcgcgggcgtgtcgacggcggacaggtcgcgcgccaggcggtgcagcgaccggagcagctccccgtcggacggcgacGggggcggcaggaacaccgacgaagagccagacgacgacggcgccgccgccgccggattaccagccattggcgcAgtaaccacaaccaaaagAaaaaatccttagcttattagtggagtaaaaccaaacggaaatggtggacacgcagc
More
|
||||||||||
| CDS seq | atggctggtaatccggcggcggcggcgccgtcgtcgtctggctcttcgtcggtgttcctgccgccccCgtcgccgtccgacggggagctgctccggtcgctgcaccgcctggcgcgcgacctgtccgccgtcgacacgcccgcgccgttcctgcgcgccgcgttcgcgtccatctcgaggcgctactggCCGGCCGCGTTCGACGACCTGCTGCTGTGCGGCGCCGCGGGGGAGCTGCCGCGGTCGGCGTCGCTGTGCCTGCGGGAGGTGCTCCTGGTGCTGCAGCGGTTCAAGGCGATCGTCGCCGATTGCTCGGCGCGCAGCCGGATGCGGCTGCTGCTGGAGTCCGACGAGATGGAGGCGGAGCTGCGGGAGCTCAACCACGACCTGGCCACGCTGCTCGACCTGTTGCCGGTCGTCGAGCTGGGGCTCGCCGACGACGTGCTCGACGTCCTCGCCCTCGCGTCGCGCCAGTGCCGGCGGTGCTCGCCGGCACCGGAGTCGGAGGAGGCGCTGAAGGCGAGCgctgacgtcgaggctgaagacggcgagcccccggtgccgccgtcggacttccggtgcccaatctctctcgatctaatgcgcgaccccgtcgtcgtcgcgagcggccagacgtacgatcgcgagtcgatcgaccggtggttcagctccggcaagtcaacgtgccccaagacagggcaggtcttggccaatctggagctcgtgtcgaacaaggccctcaagaacctcatctccaagtggtgccgggagaacggcgtcgccatggaagcctgcgaggcgagcaagagcgagcaggcccaggcggtggccgccaacaaggccgcgctcgaggcggcgcgcatgacggcgtcgttccttgtgaagaagctgtccgtctccttctccccagatgccgccaaccgcgtcgtgcacgagatccggctgctatccaagtccggctcggagaaccgagcgttcgtcggagaggccggagccgtgcctctgctcgtgcccctgctctactccgaggatgcagggctccagctcaacgccgtcacggcgctgcttaatctctccatcctcgaggccaacaagaagcgcatcatgcacgccgacggcgccgtcgaggcggtcgcccatatcatgagctccggcgcgacgtggcgcgccaaggagaacgccgccgccgccgtgctcagcttggcgtccgtgcattcctaccgccgcaggctcggcaggaaccaatccgtcgtggagaaattagtgcatctcgtgcgcaccggcccgtcgagcacaaagaaggacgcattggccgcgctgctgacgctggccggcgagagggagaacgtcggcaagctcgttgacgcaggcgtcgccgaggtggcgctgtcagcgattagcaaggaggagaccgccgcggcggtgctcgccgcgctggccaagcgcggcggtgcggaggcgatcgtcaacatcgacggcgccgtggcgcgtctcgtggcggaaatgaggcgcggcacggactgggccagggagaacgccacggcggcgctcgtgctgctctgccggcgcctgggcgcgccggcggtgacccaggtcatggccgtgcccggcgtggaatgggcgatctgggagctgatgagcatcggcacggagcgcgcccggcggaaggccgcctcgctcggccggatatgccggcggtgggcagccgcctccgccgccgacggggagcgaggcggtggttgccccgttgccaccgtggtgccccctgccatgatggcttcgtga
More
|
||||||||||
| Protein seq | MAGNPAAAAPSSSGSSSVFLPPPSPSDGELLRSLHRLARDLSAVDTPAPFLRAAFASISRRYWPAAFDDLLLCGAAGELPRSASLCLREVLLVLQRFKAIVADCSARSRMRLLLESDEMEAELRELNHDLATLLDLLPVVELGLADDVLDVLALASRQCRRCSPAPESEEALKASADVEAEDGEPPVPPSDFRCPISLDLMRDPVVVASGQTYDRESIDRWFSSGKSTCPKTGQVLANLELVSNKALKNLISKWCRENGVAMEACEASKSEQAQAVAANKAALEAARMTASFLVKKLSVSFSPDAANRVVHEIRLLSKSGSENRAFVGEAGAVPLLVPLLYSEDAGLQLNAVTALLNLSILEANKKRIMHADGAVEAVAHIMSSGATWRAKENAAAAVLSLASVHSYRRRLGRNQSVVEKLVHLVRTGPSSTKKDALAALLTLAGERENVGKLVDAGVAEVALSAISKEETAAAVLAALAKRGGAEAIVNIDGAVARLVAEMRRGTDWARENATAALVLLCRRLGAPAVTQVMAVPGVEWAIWELMSIGTERARRKAASLGRICRRWAAASAADGERGGGCPVATVVPPAMMAS |
||||||||||
| Function | U-box domain-containing protein 16 [UniProtKB/Swiss-Prot:Q9LZW3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0037480 | OsLima_01g0037480.01 | Chr01 | 36768466 | 36770486 | - | NAM | ||
| CDS seq | atggctggtaatccggcggcggcggcgccgtcgtcgtctggctcttcgtcggtgttcctgccgccccCgtcgccgtccgacggggagctgctccggtcgctgcaccgcctggcgcgcgacctgtccgccgtcgacacgcccgcgccgttcctgcgcgccgcgttcgcgtccatctcgaggcgctactggCCGGCCGCGTTCGACGACCTGCTGCTGTGCGGCGCCGCGGGGGAGCTGCCGCGGTCGGCGTCGCTGTGCCTGCGGGAGGTGCTCCTGGTGCTGCAGCGGTTCAAGGCGATCGTCGCCGATTGCTCGGCGCGCAGCCGGATGCGGCTGCTGCTGGAGTCCGACGAGATGGAGGCGGAGCTGCGGGAGCTCAACCACGACCTGGCCACGCTGCTCGACCTGTTGCCGGTCGTCGAGCTGGGGCTCGCCGACGACGTGCTCGACGTCCTCGCCCTCGCGTCGCGCCAGTGCCGGCGGTGCTCGCCGGCACCGGAGTCGGAGGAGGCGCTGAAGGCGAGCgctgacgtcgaggctgaagacggcgagcccccggtgccgccgtcggacttccggtgcccaatctctctcgatctaatgcgcgaccccgtcgtcgtcgcgagcggccagacgtacgatcgcgagtcgatcgaccggtggttcagctccggcaagtcaacgtgccccaagacagggcaggtcttggccaatctggagctcgtgtcgaacaaggccctcaagaacctcatctccaagtggtgccgggagaacggcgtcgccatggaagcctgcgaggcgagcaagagcgagcaggcccaggcggtggccgccaacaaggccgcgctcgaggcggcgcgcatgacggcgtcgttccttgtgaagaagctgtccgtctccttctccccagatgccgccaaccgcgtcgtgcacgagatccggctgctatccaagtccggctcggagaaccgagcgttcgtcggagaggccggagccgtgcctctgctcgtgcccctgctctactccgaggatgcagggctccagctcaacgccgtcacggcgctgcttaatctctccatcctcgaggccaacaagaagcgcatcatgcacgccgacggcgccgtcgaggcggtcgcccatatcatgagctccggcgcgacgtggcgcgccaaggagaacgccgccgccgccgtgctcagcttggcgtccgtgcattcctaccgccgcaggctcggcaggaaccaatccgtcgtggagaaattagtgcatctcgtgcgcaccggcccgtcgagcacaaagaaggacgcattggccgcgctgctgacgctggccggcgagagggagaacgtcggcaagctcgttgacgcaggcgtcgccgaggtggcgctgtcagcgattagcaaggaggagaccgccgcggcggtgctcgccgcgctggccaagcgcggcggtgcggaggcgatcgtcaacatcgacggcgccgtggcgcgtctcgtggcggaaatgaggcgcggcacggactgggccagggagaacgccacggcggcgctcgtgctgctctgccggcgcctgggcgcgccggcggtgacccaggtcatggccgtgcccggcgtggaatgggcgatctgggagctgatgagcatcggcacggagcgcgcccggcggaaggccgcctcgctcggccggatatgccggcggtgggcagccgcctccgccgccgacggggagcgaggcggtggttgccccgttgccaccgtggtgccccctgccatgatggcttcgtga
More
|
|||||||
| Protein seq | MAGNPAAAAPSSSGSSSVFLPPPSPSDGELLRSLHRLARDLSAVDTPAPFLRAAFASISRRYWPAAFDDLLLCGAAGELPRSASLCLREVLLVLQRFKAIVADCSARSRMRLLLESDEMEAELRELNHDLATLLDLLPVVELGLADDVLDVLALASRQCRRCSPAPESEEALKASADVEAEDGEPPVPPSDFRCPISLDLMRDPVVVASGQTYDRESIDRWFSSGKSTCPKTGQVLANLELVSNKALKNLISKWCRENGVAMEACEASKSEQAQAVAANKAALEAARMTASFLVKKLSVSFSPDAANRVVHEIRLLSKSGSENRAFVGEAGAVPLLVPLLYSEDAGLQLNAVTALLNLSILEANKKRIMHADGAVEAVAHIMSSGATWRAKENAAAAVLSLASVHSYRRRLGRNQSVVEKLVHLVRTGPSSTKKDALAALLTLAGERENVGKLVDAGVAEVALSAISKEETAAAVLAALAKRGGAEAIVNIDGAVARLVAEMRRGTDWARENATAALVLLCRRLGAPAVTQVMAVPGVEWAIWELMSIGTERARRKAASLGRICRRWAAASAADGERGGGCPVATVVPPAMMAS
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0037480 | OsLima_01g0037480.02 | Chr01 | 36768234 | 36770567 | - | IsoSeq | ||
| CDS seq | atgccgccaaccgcgtcgtgcacgagatccggctgctatccaagtccggctcggagaaccgagcgttcgtcggagaggccggagccgtgcctctgctcgtgcccctgctctactccgaggatgcagggctccagctcaacgccgtcacggcgctgcttaatctctccatcctcgaggccaacaagaagcgcatcatgcacgccgacggcgccgtcgaggcggtcgcccata
More
|
|||||||
| Protein seq | MPPTASCTRSGCYPSPARRTERSSERPEPCLCSCPCSTPRMQGSSSTPSRRCLISPSSRPTRSASCTPTAPSRRSPI |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.141743 | 0.363733 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0823900 | RBH | 0.471636 | 0.103890 | 0.989582 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g60860 | RBH | 0.316752 | 0.067522 | 0.246157 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0823900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0038570 | RBH | 0.221396 | 10.452161 | 1.271489 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0038060 | RBH | 0.142705 | 6.036013 | 1.144712 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0038470 | RBH | 1.473703 | 6.247690 | 1.134283 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0037920 | RBH | 0.104719 | 0.466262 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0037550 | RBH | 0.0 | 10.135660 | 2.397187 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0582400 | RBH | 6.9198655 | 66.684132 | 5.490916 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0037250 | RBH | 0.038873 | 1.479405 | 0.112148 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0578000 | RBH | 8.63642 | 65.438198 | 6.7201225 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0020580 | RBH | 0.026880 | 0.230742 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0037510 | RBH | 0.166737 | 16.114197 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0037740 | RBH | 0.713989 | 24.336510 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0037760 | RBH | 0.268876 | 1.796492 | 0.761164 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0037590 | RBH | 0.454171 | 11.073368 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G038090 | RBH | 0.131884 | 2.858629 | 0.959881 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0037770 | RBH | 0.566150 | 14.435050 | 0.630999 |
