Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_01g0037350 | OGI:01105040 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr01:36668204-36672728 | ||||||||
| Gene Symbol | RLCK47, OsRLCK47 | ||||||||||
| DNA seq | gctgaaatgtttgactccccaaaaaagaactgagtgacacacgtttattattgcataatggagtttacaaggcgcactcaacacgctgcttccatccaattagaaaacgaaaagtatctacaacctggttctatctacagttcacccttcccttcttagtactactgaagggagttcataaggccatttgtcttgcaatatatgagattacactaaaaccactaggctagcaaaaacaacaaacaaatcgaagtgaagagaagagaaaaaaaaatatggacaatcaaaaaccctcaacaccagatctccgtaaaataggggaaggcgatttcttgatagagcttactctagggtcatccagagcacagctggtccttggaggaagcagtgcagatgtggatgaccttggcgagagcaaatgttggtttcgcgaaggaggtgacggtgagaaggttacgacaggatggtgatgaatgatgccattgagacttgtagattttaacatcacctttcttggggcagcagatggctcttgcaaaggatatcgacatggaacctttatgtcctggacgcttgctagggactccacaacggccctcatggtaggcctctctgatggatctttattaaggcatctcaatatgatatctgctacaatccgagcagccttggtagggaagcgtccttttatacgggagtccatgattaacgataggcgactatcatcggtgaggaaaggcctactccacttgacaatattgcgttcttcttttgaggaacggacatcaaggttcttccttcctgttattagctccagcaggacaactccaaagcaccatacgttgctcttgggagtcagtacacctttctccaaggtttccactgagaggtttgcagcagcctaacaaagaatagcatccatggtaaacaatggcattgaccactatggatataatgcaaacaagtaaagtaaaaacacatcaaaatattaggatgtttgggactaaataatatcaatggcgtgcaacacagaatccatacaaacgaacagagtattaaccatgccaaaacacactacttgaatttacagaaagagatcaggcaaatgagttgggctctgataactatatcttctaaaaatattttcaaaacataacttaccacagatgcatttgatatttcctcctcggtattgaatccaacacatccatatcctgatagctttgcagtgaaatctttgtcaatttggatgtttgaggttgagaagtcattgtacatggcctgtaaaacaaataacatatgaataagagtttaaaccacaaggtcaaaaaccatcaaccaatgtactatataactaggtaaaataaatattcacttattggtaatgtcaaaaagaaaaagtttagaagcagtaacctgaaaaggcccttcatcatgtaggaaagccaggcctctagcagcaccaagagcaaccttcaaacgtgctgaccagtccatgaaacgaccatccgatcttccaaagagtagtttatctaagctgccatgatggagtcgctcatagaccaacatcctttcattagattcttctcttgcgtgaaagccaattagtttacataagttgggatgctgaagtgatgccaaggtattcacttgtgttttaaactctttcaaactctgcatattagtaaaatgtgtgttgcatcagtaccataaccagttaaattgtaaataatagatcaggatggtccaataaacggtgctgcaacattaggtaacaccaaagggggtatcagatttagacacacacacacaatacaaagtctagtgaaccactgaattcccagaactacacaataacactacagtgattttttagattccttcaatactgaatacaagtgagggaagatcagaaccatgccaataaaccacataaagtggaaagcatgagatatcatatatcaaagtatcaaacaaacgtcaaaagaaaatctcgctagtcactggatatgattaggaaggagtggagaaagcatctaggagtaaagtgaagaaagaagatcaaacacatggtctgccttcaaagtccagagcatgttacctaaccccaccaatggtgtggtcctggtttgcattcacaaaaatagaaagagttatttctgctggagacagcatagctgtaacattaagagcatagatcacatgcctacaaaaccagtccgtgcctctagcctaaggtcagcttcttaatagaagaaatgctgcaaaatggttaaagccctaaaagagtataatccttacagtgtacaagcattttgccaagtcactactcactagcaagagagaaataaaagtaagccataacatgccaaccatctgTttgacaagctgaccaacaaagcaaaatggcaaagctaccgctttacatccaatacaacttccttccaggggaaaacaaagaagatgaaacacataattcaatattacggagagcagtacctgagtggaggagagcaaccgagatactattgcttcaatggtctttgggtcggtaaaatcatccctaaaggacgccttgtatgatgttgatgtcaaactttcggaaacacactggtcaccagaaaaccattggcaagctgatgaaagttcctcataggagaaattcttaagcccatcacacttctttggaggaagtggcagagggcctgaagcatcgagtggtccacttgcattgatggctttgaagctgccaaagttcctcaatgattttccttctggtgatgggagaggaaggggcagtggattagagaaacggtggccctttatagaacctcccttgcccctggagtcatcttgatcatcgaattcggcatatggaagaccatcctgatcaaccacaattaggctggaaggagcagacagcacgcgcgctctgctgtaagaagctttcttttccgattggtggattttagccttgttcctaaaactaggaggagcagattgtaacgatggcacatgcgcttctggctctgggagtcttgaggacgtgctttcccttgcatcaaccgatttcttggtgagagcaagaggcttcttcttcttggatctcaggacagtgaagcaacccatcatgtgtacaatgagggaaagctgctacagaatttcaaataggatcctgagttagcacatagcacaaaagtagctgccccatcacaatatagcagttagtcgtcggcaacaataaaaagttgtcatgtattgcatctgctaaagctaaatgcagtacaacagaaggtgcaaaaggcgtcgaaccttgcatcagcaaaaaaaaaaaaacaaaaaaaacataactatgatatctctccttaagtacaacacctctcaatgtattctgaacttccaaaccattactggagaagaagagacagctaaactactaaaactgcctcattcccacaatcagttcactgatctatcaagagacaagctgagacgaaggcttataggagccaggtggtgtgatgcattggtccgcagacgcaacaatggacgttcaaacacaccactccatttagtttggtttccaatgcaacttcacagaaattgcgcgcgtctgcaactacttccatatccagagacggaatctagtagtcgaattctcaccaaaccaaaccaaattaacaattccgggtcaaaagtccaacttaaataagcaatctattgcagctaagtcattgaccccaacaaccaagcactgcaccacccccaaaagatttactggaaattttcaccgctccgcgatcataaatgaacccgcggttgcagcttccatggccgtgaaagcagaattcccaaaaccttcacggcattatctcacctcttactaatatacagcattgtgagcattcacagaatccaaacgaacttctgaaacggtggtgggggaaattatgaaattcgagggttttcaaacccccgaccttatatccaaagtcctagcctgccattcggcgaaaatttataaatgcaagagcgcaaacacaaacaaaaatatttaaaaaaacaaaaaaaaaacagcagcgcgctttgggaaagcagcagatgataatccaaatgagaaagatccaggcagcaacggaaaaaaaaacatcagtaaccacccatgaaataaccccaaaaaatccacctataaccaagcaaaccgcacacaacaacagcagcagaggggaagcaaagagaccgcacctgtggccgctggaacgccgctccgggaacgcaaccgcgggggaagcgaagaatgggaggggggctccccagcggtgagggtcaggccgcggctggcatctaggggaggaggccgaggagcaggaggagaggggggataggaggaGggggagaggaaagcggatataacagcagcgaggagaggcgaagaggggagaaaagtaaaataaacggaggaggattagctatggtggtggcgaggcgacagagaggagagggcgcggcactggtcaaagccggt
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| CDS seq | atgatgggttgcttcactgtcctgagatccaagaagaagaagcctcttgctctcaccaagaaatcggttgatgcaagggaaagcacgtcctcaagactcccagagccagaagcgcatgtgccatcgttacaatctgctcctcctagttttaggaacaaggctaaaatccaccaatcggaaaagaaagcttcttacagcagagcgcgcgtgctgtctgctccttccagcctaattgtggttgatcaggatggtcttccatatgccgaattcgatgatcaagatgactccaggggcaagggaggttctataaagggccaccgtttctctaatccactgccccttcctctcccatcaccagaaggaaaatcattgaggaactttggcagcttcaaagccatcaatgcaagtggaccactcgatgcttcaggccctctgccacttcctccaaagaagtgtgatgggcttaagaatttctcctatgaggaactttcatcagcttgccaatggttttctggtgaccagtgtgtttccgaaagtttgacatcaacatcatacaaggcgtcctttagggatgattttaccgacccaaagaccattgaagcaatagtatctcggttgctctcctccactcagagtttgaaagagtttaaaacacaagtgaataccttggcatcacttcagcatcccaacttatgtaaactaattggctttcacgcaagagaagaatctaatgaaaggatgttggtctatgagcgactccatcatggcagcttagataaactactctttggaagatcggatggtcgtttcatggactggtcagcacgtttgaaggttgctcttggtgctgctagaggcctggctttcctacatgatgaagggccttttcaggccatgtacaatgacttctcaacctcaaacatccaaattgacaaagatttcactgcaaagctatcaggatatggatgtgttggattcaataccgaggaggaaatatcaaatgcatctgtggctgctgcaaacctctcagtggaaaccttggagaaaggtgtactgactcccaagagcaacgtatggtgctttggagttgtcctgctggagctaataacaggaaggaagaaccttgatgtccgttcctcaaaagaagaacgcaatattgtcaagtggagtaggcctttcctcaccgatgatagtcgcctatcgttaatcatggactcccgtataaaaggacgcttccctaccaaggctgctcggattgtagcagatatcatattgagatgccttaataaagatccatcagagaggcctaccatgagggccgttgtggagtccctagcaagcgtccaggacataaaggttccatgtcgatatcctttgcaagagccatctgctgccccaagaaaggtgatgttaaaatctacaagtctcaatggcatcattcatcaccatcctgtcgtaaccttctcaccgtcacctccttcgcgaaaccaacatttgctctcgccaaggtcatccacatctgcactgcttcctccaaggaccagctgtgctctggatgaccctagagtaagctctatcaagaaatcgccttcccctattttacggagatctggtgttgagggtttttga
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| Protein seq | MMGCFTVLRSKKKKPLALTKKSVDARESTSSRLPEPEAHVPSLQSAPPSFRNKAKIHQSEKKASYSRARVLSAPSSLIVVDQDGLPYAEFDDQDDSRGKGGSIKGHRFSNPLPLPLPSPEGKSLRNFGSFKAINASGPLDASGPLPLPPKKCDGLKNFSYEELSSACQWFSGDQCVSESLTSTSYKASFRDDFTDPKTIEAIVSRLLSSTQSLKEFKTQVNTLASLQHPNLCKLIGFHAREESNERMLVYERLHHGSLDKLLFGRSDGRFMDWSARLKVALGAARGLAFLHDEGPFQAMYNDFSTSNIQIDKDFTAKLSGYGCVGFNTEEEISNASVAAANLSVETLEKGVLTPKSNVWCFGVVLLELITGRKNLDVRSSKEERNIVKWSRPFLTDDSRLSLIMDSRIKGRFPTKAARIVADIILRCLNKDPSERPTMRAVVESLASVQDIKVPCRYPLQEPSAAPRKVMLKSTSLNGIIHHHPVVTFSPSPPSRNQHLLSPRSSTSALLPPRTSCALDDPRVSSIKKSPSPILRRSGVEGF |
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| Function | Probable serine/threonine-protein kinase PBL15 [UniProtKB/Swiss-Prot:Q9SY91] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0037350 | OsLima_01g0037350.02 | Chr01 | 36668204 | 36672649 | - | NAM | ||
| CDS seq | atgatgggttgcttcactgtcctgagatccaagaagaagaagcctcttgctctcaccaagaaatcggttgatgcaagggaaagcacgtcctcaagactcccagagccagaagcgcatgtgccatcgttacaatctgctcctcctagttttaggaacaaggctaaaatccaccaatcggaaaagaaagcttcttacagcagagcgcgcgtgctgtctgctccttccagcctaattgtggttgatcaggatggtcttccatatgccgaattcgatgatcaagatgactccaggggcaagggaggttctataaagggccaccgtttctctaatccactgccccttcctctcccatcaccagaaggaaaatcattgaggaactttggcagcttcaaagccatcaatgcaagtggaccactcgatgcttcaggccctctgccacttcctccaaagaagtgtgatgggcttaagaatttctcctatgaggaactttcatcagcttgccaatggttttctggtgaccagtgtgtttccgaaagtttgacatcaacatcatacaaggcgtcctttagggatgattttaccgacccaaagaccattgaagcaatagtatctcggttgctctcctccactcagagtttgaaagagtttaaaacacaagtgaataccttggcatcacttcagcatcccaacttatgtaaactaattggctttcacgcaagagaagaatctaatgaaaggatgttggtctatgagcgactccatcatggcagcttagataaactactctttggaagatcggatggtcgtttcatggactggtcagcacgtttgaaggttgctcttggtgctgctagaggcctggctttcctacatgatgaagggccttttcaggccatgtacaatgacttctcaacctcaaacatccaaattgacaaagatttcactgcaaagctatcaggatatggatgtgttggattcaataccgaggaggaaatatcaaatgcatctgtggctgctgcaaacctctcagtggaaaccttggagaaaggtgtactgactcccaagagcaacgtatggtgctttggagttgtcctgctggagctaataacaggaaggaagaaccttgatgtccgttcctcaaaagaagaacgcaatattgtcaagtggagtaggcctttcctcaccgatgatagtcgcctatcgttaatcatggactcccgtataaaaggacgcttccctaccaaggctgctcggattgtagcagatatcatattgagatgccttaataaagatccatcagagaggcctaccatgagggccgttgtggagtccctagcaagcgtccaggacataaaggttccatgtcgatatcctttgcaagagccatctgctgccccaagaaaggtgatgttaaaatctacaagtctcaatggcatcattcatcaccatcctgtcgtaaccttctcaccgtcacctccttcgcgaaaccaacatttgctctcgccaaggtcatccacatctgcactgcttcctccaaggaccagctgtgctctggatgaccctagagtaagctctatcaagaaatcgccttcccctattttacggagatctggtgttgagggtttttga
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| Protein seq | MMGCFTVLRSKKKKPLALTKKSVDARESTSSRLPEPEAHVPSLQSAPPSFRNKAKIHQSEKKASYSRARVLSAPSSLIVVDQDGLPYAEFDDQDDSRGKGGSIKGHRFSNPLPLPLPSPEGKSLRNFGSFKAINASGPLDASGPLPLPPKKCDGLKNFSYEELSSACQWFSGDQCVSESLTSTSYKASFRDDFTDPKTIEAIVSRLLSSTQSLKEFKTQVNTLASLQHPNLCKLIGFHAREESNERMLVYERLHHGSLDKLLFGRSDGRFMDWSARLKVALGAARGLAFLHDEGPFQAMYNDFSTSNIQIDKDFTAKLSGYGCVGFNTEEEISNASVAAANLSVETLEKGVLTPKSNVWCFGVVLLELITGRKNLDVRSSKEERNIVKWSRPFLTDDSRLSLIMDSRIKGRFPTKAARIVADIILRCLNKDPSERPTMRAVVESLASVQDIKVPCRYPLQEPSAAPRKVMLKSTSLNGIIHHHPVVTFSPSPPSRNQHLLSPRSSTSALLPPRTSCALDDPRVSSIKKSPSPILRRSGVEGF
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0037350 | OsLima_01g0037350.01 | Chr01 | 36668204 | 36672728 | - | NAM | ||
| CDS seq | atgatgggttgcttcactgtcctgagatccaagaagaagaagcctcttgctctcaccaagaaatcggttgatgcaagggaaagcacgtcctcaagactcccagagccagaagcgcatgtgccatcgttacaatctgctcctcctagttttaggaacaaggctaaaatccaccaatcggaaaagaaagcttcttacagcagagcgcgcgtgctgtctgctccttccagcctaattgtggttgatcaggatggtcttccatatgccgaattcgatgatcaagatgactccaggggcaagggaggttctataaagggccaccgtttctctaatccactgccccttcctctcccatcaccagaaggaaaatcattgaggaactttggcagcttcaaagccatcaatgcaagtggaccactcgatgcttcaggccctctgccacttcctccaaagaagtgtgatgggcttaagaatttctcctatgaggaactttcatcagcttgccaatggttttctggtgaccagtgtgtttccgaaagtttgacatcaacatcatacaaggcgtcctttagggatgattttaccgacccaaagaccattgaagcaatagtatctcggttgctctcctccactcagagtttgaaagagtttaaaacacaagtgaataccttggcatcacttcagcatcccaacttatgtaaactaattggctttcacgcaagagaagaatctaatgaaaggatgttggtctatgagcgactccatcatggcagcttagataaactactctttggaagatcggatggtcgtttcatggactggtcagcacgtttgaaggttgctcttggtgctgctagaggcctggctttcctacatgatgaagggccttttcaggccatgtacaatgacttctcaacctcaaacatccaaattgacaaagatttcactgcaaagctatcaggatatggatgtgttggattcaataccgaggaggaaatatcaaatgcatctgtggctgctgcaaacctctcagtggaaaccttggagaaaggtgtactgactcccaagagcaacgtatggtgctttggagttgtcctgctggagctaataacaggaaggaagaaccttgatgtccgttcctcaaaagaagaacgcaatattgtcaagtggagtaggcctttcctcaccgatgatagtcgcctatcgttaatcatggactcccgtataaaaggacgcttccctaccaaggctgctcggattgtagcagatatcatattgagatgccttaataaagatccatcagagaggcctaccatgagggccgttgtggagtccctagcaagcgtccaggacataaaggttccatgtcgatatcctttgcaagagccatctgctgccccaagaaaggtgatgttaaaatctacaagtctcaatggcatcattcatcaccatcctgtcgtaaccttctcaccgtcacctccttcgcgaaaccaacatttgctctcgccaaggtcatccacatctgcactgcttcctccaaggaccagctgtgctctggatgaccctagagtaagctctatcaagaaatcgccttcccctattttacggagatctggtgttgagggtttttga
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| Protein seq | MMGCFTVLRSKKKKPLALTKKSVDARESTSSRLPEPEAHVPSLQSAPPSFRNKAKIHQSEKKASYSRARVLSAPSSLIVVDQDGLPYAEFDDQDDSRGKGGSIKGHRFSNPLPLPLPSPEGKSLRNFGSFKAINASGPLDASGPLPLPPKKCDGLKNFSYEELSSACQWFSGDQCVSESLTSTSYKASFRDDFTDPKTIEAIVSRLLSSTQSLKEFKTQVNTLASLQHPNLCKLIGFHAREESNERMLVYERLHHGSLDKLLFGRSDGRFMDWSARLKVALGAARGLAFLHDEGPFQAMYNDFSTSNIQIDKDFTAKLSGYGCVGFNTEEEISNASVAAANLSVETLEKGVLTPKSNVWCFGVVLLELITGRKNLDVRSSKEERNIVKWSRPFLTDDSRLSLIMDSRIKGRFPTKAARIVADIILRCLNKDPSERPTMRAVVESLASVQDIKVPCRYPLQEPSAAPRKVMLKSTSLNGIIHHHPVVTFSPSPPSRNQHLLSPRSSTSALLPPRTSCALDDPRVSSIKKSPSPILRRSGVEGF
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr01 | 36671353 | 36672449 | - | OsLima_01g0037350.02 | OsLima_01g0037350.01,OsLima_01g0037350.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.805603 | 0.274190 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0822200 | RBH | 3.034127 | 2.480958 | 4.713788 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g60700 | RBH | 2.222478 | 1.668651 | 1.276630 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0822200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0038450 | RBH | 0.212187 | 8.566598 | 5.408909 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0037940 | RBH | 0.452824 | 1.919055 | 2.874523 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0038350 | RBH | 0.761222 | 6.328179 | 9.995475 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0037800 | RBH | 0.286076 | 0.186052 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0037430 | RBH | 14.448177 | 10.670925 | 9.541191 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0580200 | RBH | 5.9572285 | 13.265286 | 6.243813 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0037120 | RBH | 0.282890 | 0.508912 | 1.348009 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0576300 | RBH | 7.9831425 | 24.388665 | 12.3345895 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0019830 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0037380 | RBH | 1.148434 | 12.310980 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0037610 | RBH | 2.131882 | 20.217466 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0037640 | RBH | 1.138950 | 0.524445 | 1.333655 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0037460 | RBH | 0.160271 | 3.137259 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G037960 | RBH | 0.607452 | 1.212699 | 3.863009 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0037640 | RBH | 0.902729 | 13.147023 | 4.300412 |
