Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_01g0037180 | OGI:01093790 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr01:36529826-36532235 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ggcggcaatggccaccgagccttccacctccgcaccagcctcccccgccgccgtcgccggcggcgacgactccctcgagccatggagcgcgcgggtgcgcaccctgacgcgcctcggccggcacagggaggcccttgccctcctccgccacggcgacccctcgccgccgccgcacgccctggcgctcccggcggcggtgatctcctgcgccaagctgcatctcgcctcgggcgtcgcccagatacacgcgctcgcggccaagcgcggcctcctcccgtcctccgacgcctacctcctctccgcgctgctctcctcctactcccgcctccgcctcctcccgctcgcccgccagctcctcgacgaattgcccctcgcgtccacgccgcccgccacggcgcgcaccgcgttcaactccctcatctccgggtgcgcgctccacggggtcccggccggctgcttctccctcttccgccgcatgcgcgtggccgccggcgtccgcttcgacgccgtcacgctgctggcgctcgtccccgttgctcccctgggcatcgtgccgcagctccacgccctcgcggcgcgatcggggctcgccgcgaacacttccgtggccaactgcctcgtgtctgtctacgcgcgcggcggcggcggcggcgcctcccttgcccgccaggttttcgaggagatgccgcgggcctcccgcgacctcgtgtcgtggaacgcggtgatctccgcccacgcgcagaacggcctcgccgtggaggccgtcgagctgtaccggcgcatgcgtggcccggaaggcggcggggtggaaccggacgccgtgacgctcgtcggcgtcctctcctcctgcgcgcacaccggcgcgcgccgcgtgggccttgacgtcgagcagtacgtgcgggatacaatcccgggcttccgcgacaacctgccgctctgcaacgcgctcatcaacttccacgcgcgctgcggcagcttggcccaggcgcaggagctgttcgacgaaatgcccgagaggagcgtcgtctcgtggacggcgctgatcatcgggtacggcatgcacggacagggcgacatcgccgtcgacctcttcgagacgatggtgtcggaagcaaccgcgccggacagcgtggccatggtcggccttctgtcggcgtgcagccacgccggcatgtacgacgaagggcgcaagtacttctcaacaatggagcgcgattactgcctccggcccaaactggagcactacacctgcatggtggacctcctcggacgagccggccgtctcgacgaagcacgggagctcatcgcgtcgatgccgatggcggccgacggcgcggtctggggcgcgctgctcggagcctgcaagatacacaagaacgtggagatgggagaagaggccttcgagcgcgtcgtcagcctcgagccggccaacgtggggtactacgtgctcatggcgaacatctacgccgacgccgggcagctcgacggcgtggcgaaggtgcgggcggcgatgaggcggcgcgggctcaggaaggagcccgggtgtagctacgtcgagcacaaggggaaggtccacctgttcatggccgacgaccactcgcacccgcaggcgaggaggatctacgagctcgtggtcgagctggagcggatggtgaaggagaagacgggtggcgatgtggttgaggagcgcgctgagaaggcggtggcggaggcggcggccgtgccattggtggggttccacagcgagaagctggcggtggcgttcgggttgctgaacacggaggcgggaagtgagatcgtggtgatcaagaacctgcgggtgtgcggggactgccactcgtttctgaagacgatctcggagttgacaaacagagcgtttctcgtcagggacgcgagccggttccatcgcttcgagaatggggcctgctcctgcagagactactggtgaagaatttggtgtgcctggtgaaggaaacacaaatgggaactcaaactttggtgtgcctggtgaaggaaagacaaatgggaatacaagctggttgagatctgccgcggaacgtgatgttggctaccggcaaaccgttgaacagcaagacagagaagccgtcgaaccagtgccgtccgatctcgagagtgagcaggaagacgttcggcgaactgtcactcagaaccggagtttaggctggaagcgcaagccgatggaacaattccgatcggtagaggagacaaaaaaaaaaatcaaaacaaaggcctgaaattttgcattttttacacgccccctgatctaacaatgatctcgtgcagtcgtgtgccgttagctaagtgttgtcaggttctttgtgcaggatggacatgggcacatggctgccgatagcataaacatttgataaagaatgactttaagctcgat
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| CDS seq | atggccaccgagccttccacctccgcaccagcctcccccgccgccgtcgccggcggcgacgactccctcgagccatggagcgcgcgggtgcgcaccctgacgcgcctcggccggcacagggaggcccttgccctcctccgccacggcgacccctcgccgccgccgcacgccctggcgctcccggcggcggtgatctcctgcgccaagctgcatctcgcctcgggcgtcgcccagatacacgcgctcgcggccaagcgcggcctcctcccgtcctccgacgcctacctcctctccgcgctgctctcctcctactcccgcctccgcctcctcccgctcgcccgccagctcctcgacgaattgcccctcgcgtccacgccgcccgccacggcgcgcaccgcgttcaactccctcatctccgggtgcgcgctccacggggtcccggccggctgcttctccctcttccgccgcatgcgcgtggccgccggcgtccgcttcgacgccgtcacgctgctggcgctcgtccccgttgctcccctgggcatcgtgccgcagctccacgccctcgcggcgcgatcggggctcgccgcgaacacttccgtggccaactgcctcgtgtctgtctacgcgcgcggcggcggcggcggcgcctcccttgcccgccaggttttcgaggagatgccgcgggcctcccgcgacctcgtgtcgtggaacgcggtgatctccgcccacgcgcagaacggcctcgccgtggaggccgtcgagctgtaccggcgcatgcgtggcccggaaggcggcggggtggaaccggacgccgtgacgctcgtcggcgtcctctcctcctgcgcgcacaccggcgcgcgccgcgtgggccttgacgtcgagcagtacgtgcgggatacaatcccgggcttccgcgacaacctgccgctctgcaacgcgctcatcaacttccacgcgcgctgcggcagcttggcccaggcgcaggagctgttcgacgaaatgcccgagaggagcgtcgtctcgtggacggcgctgatcatcgggtacggcatgcacggacagggcgacatcgccgtcgacctcttcgagacgatggtgtcggaagcaaccgcgccggacagcgtggccatggtcggccttctgtcggcgtgcagccacgccggcatgtacgacgaagggcgcaagtacttctcaacaatggagcgcgattactgcctccggcccaaactggagcactacacctgcatggtggacctcctcggacgagccggccgtctcgacgaagcacgggagctcatcgcgtcgatgccgatggcggccgacggcgcggtctggggcgcgctgctcggagcctgcaagatacacaagaacgtggagatgggagaagaggccttcgagcgcgtcgtcagcctcgagccggccaacgtggggtactacgtgctcatggcgaacatctacgccgacgccgggcagctcgacggcgtggcgaaggtgcgggcggcgatgaggcggcgcgggctcaggaaggagcccgggtgtagctacgtcgagcacaaggggaaggtccacctgttcatggccgacgaccactcgcacccgcaggcgaggaggatctacgagctcgtggtcgagctggagcggatggtgaaggagaagacgggtggcgatgtggttgaggagcgcgctgagaaggcggtggcggaggcggcggccgtgccattggtggggttccacagcgagaagctggcggtggcgttcgggttgctgaacacggaggcgggaagtgagatcgtggtgatcaagaacctgcgggtgtgcggggactgccactcgtttctgaagacgatctcggagttgacaaacagagcgtttctcgtcagggacgcgagccggttccatcgcttcgagaatggggcctgctcctgcagagactactggtga
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| Protein seq | MATEPSTSAPASPAAVAGGDDSLEPWSARVRTLTRLGRHREALALLRHGDPSPPPHALALPAAVISCAKLHLASGVAQIHALAAKRGLLPSSDAYLLSALLSSYSRLRLLPLARQLLDELPLASTPPATARTAFNSLISGCALHGVPAGCFSLFRRMRVAAGVRFDAVTLLALVPVAPLGIVPQLHALAARSGLAANTSVANCLVSVYARGGGGGASLARQVFEEMPRASRDLVSWNAVISAHAQNGLAVEAVELYRRMRGPEGGGVEPDAVTLVGVLSSCAHTGARRVGLDVEQYVRDTIPGFRDNLPLCNALINFHARCGSLAQAQELFDEMPERSVVSWTALIIGYGMHGQGDIAVDLFETMVSEATAPDSVAMVGLLSACSHAGMYDEGRKYFSTMERDYCLRPKLEHYTCMVDLLGRAGRLDEARELIASMPMAADGAVWGALLGACKIHKNVEMGEEAFERVVSLEPANVGYYVLMANIYADAGQLDGVAKVRAAMRRRGLRKEPGCSYVEHKGKVHLFMADDHSHPQARRIYELVVELERMVKEKTGGDVVEERAEKAVAEAAAVPLVGFHSEKLAVAFGLLNTEAGSEIVVIKNLRVCGDCHSFLKTISELTNRAFLVRDASRFHRFENGACSCRDYW |
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| Function | Putative pentatricopeptide repeat-containing protein At3g11460, mitochondrial [UniProtKB/Swiss-Prot:Q9CAY1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0037180 | OsLima_01g0037180.01 | Chr01 | 36529826 | 36532235 | + | NAM | ||
| CDS seq | atggccaccgagccttccacctccgcaccagcctcccccgccgccgtcgccggcggcgacgactccctcgagccatggagcgcgcgggtgcgcaccctgacgcgcctcggccggcacagggaggcccttgccctcctccgccacggcgacccctcgccgccgccgcacgccctggcgctcccggcggcggtgatctcctgcgccaagctgcatctcgcctcgggcgtcgcccagatacacgcgctcgcggccaagcgcggcctcctcccgtcctccgacgcctacctcctctccgcgctgctctcctcctactcccgcctccgcctcctcccgctcgcccgccagctcctcgacgaattgcccctcgcgtccacgccgcccgccacggcgcgcaccgcgttcaactccctcatctccgggtgcgcgctccacggggtcccggccggctgcttctccctcttccgccgcatgcgcgtggccgccggcgtccgcttcgacgccgtcacgctgctggcgctcgtccccgttgctcccctgggcatcgtgccgcagctccacgccctcgcggcgcgatcggggctcgccgcgaacacttccgtggccaactgcctcgtgtctgtctacgcgcgcggcggcggcggcggcgcctcccttgcccgccaggttttcgaggagatgccgcgggcctcccgcgacctcgtgtcgtggaacgcggtgatctccgcccacgcgcagaacggcctcgccgtggaggccgtcgagctgtaccggcgcatgcgtggcccggaaggcggcggggtggaaccggacgccgtgacgctcgtcggcgtcctctcctcctgcgcgcacaccggcgcgcgccgcgtgggccttgacgtcgagcagtacgtgcgggatacaatcccgggcttccgcgacaacctgccgctctgcaacgcgctcatcaacttccacgcgcgctgcggcagcttggcccaggcgcaggagctgttcgacgaaatgcccgagaggagcgtcgtctcgtggacggcgctgatcatcgggtacggcatgcacggacagggcgacatcgccgtcgacctcttcgagacgatggtgtcggaagcaaccgcgccggacagcgtggccatggtcggccttctgtcggcgtgcagccacgccggcatgtacgacgaagggcgcaagtacttctcaacaatggagcgcgattactgcctccggcccaaactggagcactacacctgcatggtggacctcctcggacgagccggccgtctcgacgaagcacgggagctcatcgcgtcgatgccgatggcggccgacggcgcggtctggggcgcgctgctcggagcctgcaagatacacaagaacgtggagatgggagaagaggccttcgagcgcgtcgtcagcctcgagccggccaacgtggggtactacgtgctcatggcgaacatctacgccgacgccgggcagctcgacggcgtggcgaaggtgcgggcggcgatgaggcggcgcgggctcaggaaggagcccgggtgtagctacgtcgagcacaaggggaaggtccacctgttcatggccgacgaccactcgcacccgcaggcgaggaggatctacgagctcgtggtcgagctggagcggatggtgaaggagaagacgggtggcgatgtggttgaggagcgcgctgagaaggcggtggcggaggcggcggccgtgccattggtggggttccacagcgagaagctggcggtggcgttcgggttgctgaacacggaggcgggaagtgagatcgtggtgatcaagaacctgcgggtgtgcggggactgccactcgtttctgaagacgatctcggagttgacaaacagagcgtttctcgtcagggacgcgagccggttccatcgcttcgagaatggggcctgctcctgcagagactactggtga
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| Protein seq | MATEPSTSAPASPAAVAGGDDSLEPWSARVRTLTRLGRHREALALLRHGDPSPPPHALALPAAVISCAKLHLASGVAQIHALAAKRGLLPSSDAYLLSALLSSYSRLRLLPLARQLLDELPLASTPPATARTAFNSLISGCALHGVPAGCFSLFRRMRVAAGVRFDAVTLLALVPVAPLGIVPQLHALAARSGLAANTSVANCLVSVYARGGGGGASLARQVFEEMPRASRDLVSWNAVISAHAQNGLAVEAVELYRRMRGPEGGGVEPDAVTLVGVLSSCAHTGARRVGLDVEQYVRDTIPGFRDNLPLCNALINFHARCGSLAQAQELFDEMPERSVVSWTALIIGYGMHGQGDIAVDLFETMVSEATAPDSVAMVGLLSACSHAGMYDEGRKYFSTMERDYCLRPKLEHYTCMVDLLGRAGRLDEARELIASMPMAADGAVWGALLGACKIHKNVEMGEEAFERVVSLEPANVGYYVLMANIYADAGQLDGVAKVRAAMRRRGLRKEPGCSYVEHKGKVHLFMADDHSHPQARRIYELVVELERMVKEKTGGDVVEERAEKAVAEAAAVPLVGFHSEKLAVAFGLLNTEAGSEIVVIKNLRVCGDCHSFLKTISELTNRAFLVRDASRFHRFENGACSCRDYW
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0819800 | RBH | 0.093254 | 0.103890 | 0.496020 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g60430 | RBH | 0.063063 | 0.069875 | 0.127685 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0819800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0038270 | RBH | 0.0 | 1.089302 | 0.332134 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0037740 | RBH | 0.0 | 0.0 | 0.117921 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0038170 | RBH | 0.0 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0037610 | RBH | 0.029603 | 0.024486 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0037230 | RBH | 0.433113 | 0.0 | 2.166647 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0577800 | RBH | 0.3176575 | 1.2648495 | 0.3072605 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0036930 | RBH | 0.0 | 0.0 | 0.051160 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0509300 | SBH | 0.1036825 | 0.662548 | 0.542317 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0017290 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0037190 | RBH | 0.075466 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0037420 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0037470 | RBH | 0.108186 | 0.098770 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0037270 | RBH | 0.049010 | 0.949202 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G037790 | RBH | 0.0 | 0.0 | 0.130715 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0037460 | RBH | 0.0 | 0.0 | 0.0 |
