Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_01g0037050 | OGI:01104470 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr01:36415789-36417663 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcatgagtgttctactgaatataatggggtcgtattactcaggtggctgcaatccctcatccaacttatcagcgcatgtaacatttcgtagatcatgtcagcctcagggtgtcccctatccccactgacaaaagcatgcatcactgctccactccccctatcatctccacccacctcaacccagctgcagcctggtgcagctttctgtactcctcgccgtttcatctcgcccctcacctcttccagttcgtcaaagtttccctcccagccatatgtattcgctagcagcacccacccaccactctcagactgctctgtcgtcatcagcatcctagctgcctcttgggctctctccttatcaccatgcatccggcatgctgcaaggtatgtcctccaagcaccaacccccacatcccctgcatcctctactaCctttctagcctcctccagcctccctgcacgcccaagcatgtcagtcacacatgcgtagtgctctaactgtggctccaaagaaaattcctcTttcattctcttcagaaaattcttcccttcttcaacaagcccggaatggctgcaagccgacaatgcccccaacagtgttatctcatctggaagaagccgttccacctctgtcatctggcagaacaactccagtgcttccttcccatgcccgtgcgatgcatatccatcaatcataatattccatgatgccacatcccgctgttgcatccgatcaaatatgcgacgagcctcatccaaagccccactcttggcatacatgtccaccagtgcattacaagcaaacgagtccaacgcgccatggcaagccagtccactagttacaatgtacccatgcacttcccttcccacctgcaatgctgcagtctgcgcgcatgcaggaagaacagccgcaacggtcactgcatctggccacacagcaacgcgtctcatccttgaaaacagcttcattgtcccagcatggtcagcggagtaatgcagcgctgacagcattgagttccagctgaacagatccttgactatgtccgccatcccctcaaacaccattgctgcatcatccaccttgtggcacttCccgtaaagatccaccaacgcattgcacacagacacctcctgttcaaacgcggacttcaccactagcccatgaaccgcagccccgtgccccaaatccgctgtggcggtacagaccgacaggatgccggtgacggtgaagctgctgatctcgacctcaccgtcctccctcatcatccggaagcactccacggcgtggccgaagcacccgagcctggcaaacccattgaccatcgcgttccacaccaccacgtcccggcgcggcaattcgccgaacaggcggcgcgcgtggtccgcgagtccaaacctgaggcacgagcggagcatcgcgctggcgcagaagaggtcgtgcgcgaggccgcagcggagcgcgagggcgtggagcgcgaggaggtgtggcggcgagggcgcggaggagacgaggggcgggaaggagaaggcgtccggggagtacgcgtggcggaggccacggaacaccgcgagcgcgagcgggtggggcagggagagccccgcgttgaagcagggcagcggcgggggcgacggccggtccaggaggagcggggcgacgtggcggtggagcgccggggcggcggcgcgcgcgtagagcgagacgagggaggtgagcgcggccggggaggcggcgaggcggccggagacgaggaggtgggcgtggagcgggaggaggaggcgcggccccgccgcgcgcggggtggcgaggatcgcgCggagcgggacgcgcagcgccgccatcctttccgcttcgctcgcgggggcggatcagccggc
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| CDS seq | atggcggcgctgcgcgtcccgctccGcgcgatcctcgccaccccgcgcgcggcggggccgcgcctcctcctcccgctccacgcccacctcctcgtctccggccgcctcgccgcctccccggccgcgctcacctccctcgtctcgctctacgcgcgcgccgccgccccggcgctccaccgccacgtcgccccgctcctcctggaccggccgtcgcccccgccgctgccctgcttcaacgcggggctctccctgccccacccgctcgcgctcgcggtgttccgtggcctccgccacgcgtactccccggacgccttctccttcccgcccctcgtctcctccgcgccctcgccgccacacctcctcgcgctccacgccctcgcgctccgctgcggcctcgcgcacgacctcttctgcgccagcgcgatgctccgctcgtgcctcaggtttggactcgcggaccacgcgcgccgcctgttcggcgaattgccgcgccgggacgtggtggtgtggaacgcgatggtcaatgggtttgccaggctcgggtgcttcggccacgccgtggagtgcttccggatgatgagggaggacggtgaggtcgagatcagcagcttcaccgtcaccggcatcctgtcggtctgtaccgccacagcggatttggggcacggggctgcggttcatgggctagtggtgaagtccgcgtttgaacaggaggtgtctgtgtgcaatgcgttggtggatctttacggGaagtgccacaaggtggatgatgcagcaatggtgtttgaggggatggcggacatagtcaaggatctgttcagctggaactcaatgctgtcagcgctgcattactccgctgaccatgctgggacaatgaagctgttttcaaggatgagacgcgttgctgtgtggccagatgcagtgaccgttgcggctgttcttcctgcatgcgcgcagactgcagcattgcaggtgggaagggaagtgcatgggtacattgtaactagtggactggcttgccatggcgcgttggactcgtttgcttgtaatgcactggtggacatgtatgccaagagtggggctttggatgaggctcgtcgcatatttgatcggatgcaacagcgggatgtggcatcatggaatattatgattgatggatatgcatcgcacgggcatgggaaggaagcactggagttgttctgccagatgacagaggtggaacggcttcttccagatgagataacactgttgggggcattgtcggcttgcagccattccgggcttgttgaagaagggaagaattttctgaagagaatgaaAgaggaattttctttggagccacagttagagcactacgcatgtgtgactgacatgcttgggcgtgcagggaggctggaggaggctagaaagGtagtagaggatgcaggggatgtgggggttggtgcttggaggacataccttgcagcatgccggatgcatggtgataaggagagagcccaagaggcagctaggatgctgatgacgacagagcagtctgagagtggtgggtgggtgctgctagcgaatacatatggctgggagggaaactttgacgaactggaagaggtgaggggcgagatgaaacggcgaggagtacagaaagctgcaccaggctgcagctgggttgaggtgggtggagatgatagggggagtggagcagtgatgcatgcttttgtcagtggggataggggacaccctgaggctgacatgatctacgaaatgttacatgcgctgataagttggatgagggattgcagccacctgagtaatacgaccccattatattcagtagaacactcatga
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| Protein seq | MAALRVPLRAILATPRAAGPRLLLPLHAHLLVSGRLAASPAALTSLVSLYARAAAPALHRHVAPLLLDRPSPPPLPCFNAGLSLPHPLALAVFRGLRHAYSPDAFSFPPLVSSAPSPPHLLALHALALRCGLAHDLFCASAMLRSCLRFGLADHARRLFGELPRRDVVVWNAMVNGFARLGCFGHAVECFRMMREDGEVEISSFTVTGILSVCTATADLGHGAAVHGLVVKSAFEQEVSVCNALVDLYGKCHKVDDAAMVFEGMADIVKDLFSWNSMLSALHYSADHAGTMKLFSRMRRVAVWPDAVTVAAVLPACAQTAALQVGREVHGYIVTSGLACHGALDSFACNALVDMYAKSGALDEARRIFDRMQQRDVASWNIMIDGYASHGHGKEALELFCQMTEVERLLPDEITLLGALSACSHSGLVEEGKNFLKRMKEEFSLEPQLEHYACVTDMLGRAGRLEEARKVVEDAGDVGVGAWRTYLAACRMHGDKERAQEAARMLMTTEQSESGGWVLLANTYGWEGNFDELEEVRGEMKRRGVQKAAPGCSWVEVGGDDRGSGAVMHAFVSGDRGHPEADMIYEMLHALISWMRDCSHLSNTTPLYSVEHS |
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| Function | Pentatricopeptide repeat-containing protein At3g14730 [UniProtKB/Swiss-Prot:Q9LUC2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0037050 | OsLima_01g0037050.01 | Chr01 | 36415789 | 36417663 | - | NAM | ||
| CDS seq | atggcggcgctgcgcgtcccgctccGcgcgatcctcgccaccccgcgcgcggcggggccgcgcctcctcctcccgctccacgcccacctcctcgtctccggccgcctcgccgcctccccggccgcgctcacctccctcgtctcgctctacgcgcgcgccgccgccccggcgctccaccgccacgtcgccccgctcctcctggaccggccgtcgcccccgccgctgccctgcttcaacgcggggctctccctgccccacccgctcgcgctcgcggtgttccgtggcctccgccacgcgtactccccggacgccttctccttcccgcccctcgtctcctccgcgccctcgccgccacacctcctcgcgctccacgccctcgcgctccgctgcggcctcgcgcacgacctcttctgcgccagcgcgatgctccgctcgtgcctcaggtttggactcgcggaccacgcgcgccgcctgttcggcgaattgccgcgccgggacgtggtggtgtggaacgcgatggtcaatgggtttgccaggctcgggtgcttcggccacgccgtggagtgcttccggatgatgagggaggacggtgaggtcgagatcagcagcttcaccgtcaccggcatcctgtcggtctgtaccgccacagcggatttggggcacggggctgcggttcatgggctagtggtgaagtccgcgtttgaacaggaggtgtctgtgtgcaatgcgttggtggatctttacggGaagtgccacaaggtggatgatgcagcaatggtgtttgaggggatggcggacatagtcaaggatctgttcagctggaactcaatgctgtcagcgctgcattactccgctgaccatgctgggacaatgaagctgttttcaaggatgagacgcgttgctgtgtggccagatgcagtgaccgttgcggctgttcttcctgcatgcgcgcagactgcagcattgcaggtgggaagggaagtgcatgggtacattgtaactagtggactggcttgccatggcgcgttggactcgtttgcttgtaatgcactggtggacatgtatgccaagagtggggctttggatgaggctcgtcgcatatttgatcggatgcaacagcgggatgtggcatcatggaatattatgattgatggatatgcatcgcacgggcatgggaaggaagcactggagttgttctgccagatgacagaggtggaacggcttcttccagatgagataacactgttgggggcattgtcggcttgcagccattccgggcttgttgaagaagggaagaattttctgaagagaatgaaAgaggaattttctttggagccacagttagagcactacgcatgtgtgactgacatgcttgggcgtgcagggaggctggaggaggctagaaagGtagtagaggatgcaggggatgtgggggttggtgcttggaggacataccttgcagcatgccggatgcatggtgataaggagagagcccaagaggcagctaggatgctgatgacgacagagcagtctgagagtggtgggtgggtgctgctagcgaatacatatggctgggagggaaactttgacgaactggaagaggtgaggggcgagatgaaacggcgaggagtacagaaagctgcaccaggctgcagctgggttgaggtgggtggagatgatagggggagtggagcagtgatgcatgcttttgtcagtggggataggggacaccctgaggctgacatgatctacgaaatgttacatgcgctgataagttggatgagggattgcagccacctgagtaatacgaccccattatattcagtagaacactcatga
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| Protein seq | MAALRVPLRAILATPRAAGPRLLLPLHAHLLVSGRLAASPAALTSLVSLYARAAAPALHRHVAPLLLDRPSPPPLPCFNAGLSLPHPLALAVFRGLRHAYSPDAFSFPPLVSSAPSPPHLLALHALALRCGLAHDLFCASAMLRSCLRFGLADHARRLFGELPRRDVVVWNAMVNGFARLGCFGHAVECFRMMREDGEVEISSFTVTGILSVCTATADLGHGAAVHGLVVKSAFEQEVSVCNALVDLYGKCHKVDDAAMVFEGMADIVKDLFSWNSMLSALHYSADHAGTMKLFSRMRRVAVWPDAVTVAAVLPACAQTAALQVGREVHGYIVTSGLACHGALDSFACNALVDMYAKSGALDEARRIFDRMQQRDVASWNIMIDGYASHGHGKEALELFCQMTEVERLLPDEITLLGALSACSHSGLVEEGKNFLKRMKEEFSLEPQLEHYACVTDMLGRAGRLEEARKVVEDAGDVGVGAWRTYLAACRMHGDKERAQEAARMLMTTEQSESGGWVLLANTYGWEGNFDELEEVRGEMKRRGVQKAAPGCSWVEVGGDDRGSGAVMHAFVSGDRGHPEADMIYEMLHALISWMRDCSHLSNTTPLYSVEHS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.129609 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0818200 | RBH | 0.069557 | 0.000000 | 0.170005 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g60250 | RBH | 0.140958 | 0.047977 | 0.043763 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0818200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0038160 | RBH | 0.101320 | 0.000000 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0037630 | RBH | 0.0 | 0.0 | 0.548688 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0038040 | RBH | 0.224612 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0037430 | RBH | 0.000000 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0037110 | RBH | 0.000000 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0576200 | RBH | 0.6534785 | 0.9581695 | 0.666384 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0036810 | RBH | 0.000000 | 0.000000 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0572400 | RBH | 0.3977945 | 0.9062275 | 1.2063045 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0018540 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0037070 | RBH | 0.000000 | 3.217105 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0037300 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0037370 | RBH | 0.0 | 0.381964 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0037130 | RBH | 0.0 | 1.479111 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G037660 | RBH | 0.067559 | 0.471220 | 0.189250 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0037340 | RBH | 0.498538 | 0.0 | 0.837241 |
