Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_01g0035390 | OGI:01100820 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr01:35153445-35156928 | ||||||||
| Gene Symbol | OsSub7, SUB7, OsSub8, SUB8 | ||||||||||
| DNA seq | acacaacgaagaaaaatggaattccactattgtcagcaacgtttggcttcagtgctgctactttgcttttggatgctgttcatcagagcgcacggatcgcgcaaggttagcatgcctccttcacgatttgcttttccagagattggactaagaaatgttctaaacaccctctgctatagctctacataacgtatctaggtgacagaaagcatgcacacacagacgatgttgttgcttcccaccatgatacactctcaagcgttcttggaaggtgatctctgtcactgtcagttagtttgatgactttgatcacatgatattttgtatactttcacctttatggttttgtatcaaaggttctttgatgaaccatctgaactttgaaattcaagagcttaaccaaaccatttcttgctaaccaattaaccatgttgaactttcagtaaagaggaatccttatcttccatcatctataactacaagcatggattctcaggatttgctgcaatgctaacagaagagcaagcagaacaacttgcaggtcagatgatcctaccaataaactgatatacccatccagaaaagaggatgatacatcgattcacttggctagaataccgatcatatatacttctcacattctgattctaatcgagcagtatgattatcccgataaactcagcatgtgtggtttgcttaatgcatctgatatctccagagttaccagaagtaatcagtgtgcagcgaagcaggaggtacaagacaacgaccacacggagctgggatttcctggggctgaactaccaaaaccccagtgaattactccgaaggagcaactacggagaagacataatcatcggggttgttgacaccggttagtctagagcgcacgttcaaatgTttttggtggcgccatttctgccgcaatcccattataacgcagctggtctggtggtgcacttgccacagggatatggccggagtcgagaagcttccgcgacgaagggtacgggccggtgccggcacggtggaagggcgtgtgtcaggtcggagaaggatggggcagcaacaactgcagccgcaagatcatcggcgcgcggttctaccacgccggggtggacgaggacgacctcaagatcgactacctctcgccccgcgacgtgaacggccacggcacgcacacggcgtccaccgcggcgggctccgtcgtggaggcggtcagcttccacgggctggccgcgggcaccgcccgcggcggcgcgccccgggcgcgcatcgcggtgtacaagtccgtctggggcaggggcggcgccgggtcagggaactccgccaccgtgctcgccgccatcgacgacgccatgcacgacggcgtggacgtgctatccctgtccctcgaggttcaggagaactcgttcggcgcgctgcacgccgtccagaaggggatcaccgtcgtgtacgccgcagggaactctggacctgtgccgcaggtggttgggaacacggctccatgggtcatcacagtcgcagcaagcaagatcgatcggtctttcccgaccgtgatcactctgggggacaagactcagatagtggtaggaggcgcaaatgcgaaccatttatcacctcatggtgtgtgctcaactgctcaacggctgatcttgtgcgaaactctggctattttgcagggacagtccatgtacagcgaagggaagaactcatcaggaagcaccttcaaacttctagtagatggaggcctgtatgaaaaaaaatgcctttgccaatatttttttctgcttaatttataagctaatgagctgttcgttttcttgtgtggatagatgcaccgataatgatctgaacggcacggacataaagggaagagttgtgctgtgcacctccctcgggataccaccgcttatgcttttcccggtagcattgaaaaacgtcttggatgctgggggttcaggtctaatcttcgctcaatacacaactgacatcctggacgtcacaaaaaactgcaacggcactgcctgtgttcttgtggaccttgacactgcacaactgatcagctcatacatcagcggcacaaggtaaaacaaattgcaaacttctctaatgagttcaacacttcctaaactattatcgtatttaagcagctcaccagtggcaaagatcgaaccaccacgcactgtcacgggtgaagggatactggcaccaaaagtggcagcattctcctcgagaggtccatcagttgattaccctgatattattaaggtagctaactccaacttagcactcagctaggcgctagaggttcatccgatgaaagccggggaatttcttcatcttaccagcggtctggttgcttctgtaacagcctgatgtagctgcaccaggatccaacattttagcagccgtgaaagacggatacaaacttgagtcaggaacatcaatggcaacgccacatgttgcaggcattgttgcgctgctgaaagctctccatccagactggtctccagctgcaataaaatcggcagttgttactactggtacagaaattcaataccccaacctctaaatcattcctgtgattttctgcaatcttacccatgtttcattttgcatactgaagcgtctgtaactgatgaacgaggcatgccaatactggcagaaggagtgcctcggaagatcgctgatccgtttgactacggaagtggaaacattaacccaaacagggcagctgatcctggcctcatttatgacatcgacccaacagattacaacaagttctttgcgtgcaccatcaagacatctgccagctgcaatgcaacaatgctacctaggtatcacctgaacctaccatcaatcgctgttcctgatctcagggatccaacaactgtatctagaacagttagaaatgtaggtgaggttaatgcagtttaccacgctgaaatccagtgcccacctggagttaaaatggttgttgagccatctgttcttgtcttcgatgctgcaaacaaagttcacaccttcaaggttagtttttcacctctatggaaattgcaaggggactatacatttggcagccttacttggcacaatgacaacaagtcagtgagaattccaatagctgtccggatcaccatccaagatttctatgcagatgttgcataacctgggcaaaacatgcaggcaataacacagtgctcttagaggcaatagagcaaaatacaggatataccaatttccacagagatatggttgcttgtaaatacttatcaccagaataatgagttaatgaCcggccaatgttgactggtcaatgtatttcatttctatcacgtatctgattatcacttcgatggatggtcaatttcataccatgttggttacagaaatacaaaaatgttcaggtctatgtcatgccatgtcttaaaatatcatgtagtttttCctcccacctaacgcggtatgacactgattaaag
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| CDS seq | atggaattccactattgtcagcaacgtttggcttcagtgctgctactttgcttttggatgctgttcatcagagcgcacggatcgcgcaagctctacataacgtatctaggtgacagaaagcatgcacacacagacgatgttgttgcttcccaccatgatacactctcaagcgttcttggaagtaaagaggaatccttatcttccatcatctataactacaagcatggattctcaggatttgctgcaatgctaacagaagagcaagcagaacaacttgcagagttaccagaagtaatcagtgtgcagcgaagcaggaggtacaagacaacgaccacacggagctgggatttcctggggctgaactaccaaaaccccagtgaattactccgaaggagcaactacggagaagacataatcatcggggttgttgacaccgggatatggccggagtcgagaagcttccgcgacgaagggtacgggccggtgccggcacggtggaagggcgtgtgtcaggtcggagaaggatggggcagcaacaactgcagccgcaagatcatcggcgcgcggttctaccacgccggggtggacgaggacgacctcaagatcgactacctctcgccccgcgacgtgaacggccacggcacgcacacggcgtccaccgcggcgggctccgtcgtggaggcggtcagcttccacgggctggccgcgggcaccgcccgcggcggcgcgccccgggcgcgcatcgcggtgtacaagtccgtctggggcaggggcggcgccgggtcagggaactccgccaccgtgctcgccgccatcgacgacgccatgcacgacggcgtggacgtgctatccctgtccctcgaggttcaggagaactcgttcggcgcgctgcacgccgtccagaaggggatcaccgtcgtgtacgccgcagggaactctggacctgtgccgcaggtggttgggaacacggctccatgggtcatcacagtcgcagcaagcaagatcgatcggtctttcccgaccgtgatcactctgggggacaagactcagatagtgggacagtccatgtacagcgaagggaagaactcatcaggaagcaccttcaaacttctagtagatggaggcctatgcaccgataatgatctgaacggcacggacataaagggaagagttgtgctgtgcacctccctcgggataccaccgcttatgcttttcccggtagcattgaaaaacgtcttggatgctgggggttcaggtctaatcttcgctcaatacacaactgacatcctggacgtcacaaaaaactgcaacggcactgcctgtgttcttgtggaccttgacactgcacaactgatcagctcatacatcagcggcacaagctcaccagtggcaaagatcgaaccaccacgcactgtcacgggtgaagggatactggcaccaaaagtggcagcattctcctcgagaggtccatcagttgattaccctgatattattaagcctgatgtagctgcaccaggatccaacattttagcagccgtgaaagacggatacaaacttgagtcaggaacatcaatggcaacgccacatgttgcaggcattgttgcgctgctgaaagctctccatccagactggtctccagctgcaataaaatcggcagttgttactactgcgtctgtaactgatgaacgaggcatgccaatactggcagaaggagtgcctcggaagatcgctgatccgtttgactacggaagtggaaacattaacccaaacagggcagctgatcctggcctcatttatgacatcgacccaacagattacaacaagttctttgcgtgcaccatcaagacatctgccagctgcaatgcaacaatgctacctaggtatcacctgaacctaccatcaatcgctgttcctgatctcagggatccaacaactgtatctagaacagttagaaatgtaggtgaggttaatgcagtttaccacgctgaaatccagtgcccacctggagttaaaatggttgttgagccatctgttcttgtcttcgatgctgcaaacaaagttcacaccttcaaggttagtttttcacctctatggaaattgcaaggggactatacatttggcagccttacttggcacaatgacaacaagtcagtgagaattccaatagctgtccggatcaccatccaagatttctatgcagatgttgcataa
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| Protein seq | MEFHYCQQRLASVLLLCFWMLFIRAHGSRKLYITYLGDRKHAHTDDVVASHHDTLSSVLGSKEESLSSIIYNYKHGFSGFAAMLTEEQAEQLAELPEVISVQRSRRYKTTTTRSWDFLGLNYQNPSELLRRSNYGEDIIIGVVDTGIWPESRSFRDEGYGPVPARWKGVCQVGEGWGSNNCSRKIIGARFYHAGVDEDDLKIDYLSPRDVNGHGTHTASTAAGSVVEAVSFHGLAAGTARGGAPRARIAVYKSVWGRGGAGSGNSATVLAAIDDAMHDGVDVLSLSLEVQENSFGALHAVQKGITVVYAAGNSGPVPQVVGNTAPWVITVAASKIDRSFPTVITLGDKTQIVGQSMYSEGKNSSGSTFKLLVDGGLCTDNDLNGTDIKGRVVLCTSLGIPPLMLFPVALKNVLDAGGSGLIFAQYTTDILDVTKNCNGTACVLVDLDTAQLISSYISGTSSPVAKIEPPRTVTGEGILAPKVAAFSSRGPSVDYPDIIKPDVAAPGSNILAAVKDGYKLESGTSMATPHVAGIVALLKALHPDWSPAAIKSAVVTTASVTDERGMPILAEGVPRKIADPFDYGSGNINPNRAADPGLIYDIDPTDYNKFFACTIKTSASCNATMLPRYHLNLPSIAVPDLRDPTTVSRTVRNVGEVNAVYHAEIQCPPGVKMVVEPSVLVFDAANKVHTFKVSFSPLWKLQGDYTFGSLTWHNDNKSVRIPIAVRITIQDFYADVA |
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| Function | Subtilisin-like protease SBT3.10 [UniProtKB/Swiss-Prot:Q9ZSB1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0035390 | OsLima_01g0035390.01 | Chr01 | 35153445 | 35156928 | + | NAM | ||
| CDS seq | atggaattccactattgtcagcaacgtttggcttcagtgctgctactttgcttttggatgctgttcatcagagcgcacggatcgcgcaagctctacataacgtatctaggtgacagaaagcatgcacacacagacgatgttgttgcttcccaccatgatacactctcaagcgttcttggaagtaaagaggaatccttatcttccatcatctataactacaagcatggattctcaggatttgctgcaatgctaacagaagagcaagcagaacaacttgcagagttaccagaagtaatcagtgtgcagcgaagcaggaggtacaagacaacgaccacacggagctgggatttcctggggctgaactaccaaaaccccagtgaattactccgaaggagcaactacggagaagacataatcatcggggttgttgacaccgggatatggccggagtcgagaagcttccgcgacgaagggtacgggccggtgccggcacggtggaagggcgtgtgtcaggtcggagaaggatggggcagcaacaactgcagccgcaagatcatcggcgcgcggttctaccacgccggggtggacgaggacgacctcaagatcgactacctctcgccccgcgacgtgaacggccacggcacgcacacggcgtccaccgcggcgggctccgtcgtggaggcggtcagcttccacgggctggccgcgggcaccgcccgcggcggcgcgccccgggcgcgcatcgcggtgtacaagtccgtctggggcaggggcggcgccgggtcagggaactccgccaccgtgctcgccgccatcgacgacgccatgcacgacggcgtggacgtgctatccctgtccctcgaggttcaggagaactcgttcggcgcgctgcacgccgtccagaaggggatcaccgtcgtgtacgccgcagggaactctggacctgtgccgcaggtggttgggaacacggctccatgggtcatcacagtcgcagcaagcaagatcgatcggtctttcccgaccgtgatcactctgggggacaagactcagatagtgggacagtccatgtacagcgaagggaagaactcatcaggaagcaccttcaaacttctagtagatggaggcctatgcaccgataatgatctgaacggcacggacataaagggaagagttgtgctgtgcacctccctcgggataccaccgcttatgcttttcccggtagcattgaaaaacgtcttggatgctgggggttcaggtctaatcttcgctcaatacacaactgacatcctggacgtcacaaaaaactgcaacggcactgcctgtgttcttgtggaccttgacactgcacaactgatcagctcatacatcagcggcacaagctcaccagtggcaaagatcgaaccaccacgcactgtcacgggtgaagggatactggcaccaaaagtggcagcattctcctcgagaggtccatcagttgattaccctgatattattaagcctgatgtagctgcaccaggatccaacattttagcagccgtgaaagacggatacaaacttgagtcaggaacatcaatggcaacgccacatgttgcaggcattgttgcgctgctgaaagctctccatccagactggtctccagctgcaataaaatcggcagttgttactactgcgtctgtaactgatgaacgaggcatgccaatactggcagaaggagtgcctcggaagatcgctgatccgtttgactacggaagtggaaacattaacccaaacagggcagctgatcctggcctcatttatgacatcgacccaacagattacaacaagttctttgcgtgcaccatcaagacatctgccagctgcaatgcaacaatgctacctaggtatcacctgaacctaccatcaatcgctgttcctgatctcagggatccaacaactgtatctagaacagttagaaatgtaggtgaggttaatgcagtttaccacgctgaaatccagtgcccacctggagttaaaatggttgttgagccatctgttcttgtcttcgatgctgcaaacaaagttcacaccttcaaggttagtttttcacctctatggaaattgcaaggggactatacatttggcagccttacttggcacaatgacaacaagtcagtgagaattccaatagctgtccggatcaccatccaagatttctatgcagatgttgcataa
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| Protein seq | MEFHYCQQRLASVLLLCFWMLFIRAHGSRKLYITYLGDRKHAHTDDVVASHHDTLSSVLGSKEESLSSIIYNYKHGFSGFAAMLTEEQAEQLAELPEVISVQRSRRYKTTTTRSWDFLGLNYQNPSELLRRSNYGEDIIIGVVDTGIWPESRSFRDEGYGPVPARWKGVCQVGEGWGSNNCSRKIIGARFYHAGVDEDDLKIDYLSPRDVNGHGTHTASTAAGSVVEAVSFHGLAAGTARGGAPRARIAVYKSVWGRGGAGSGNSATVLAAIDDAMHDGVDVLSLSLEVQENSFGALHAVQKGITVVYAAGNSGPVPQVVGNTAPWVITVAASKIDRSFPTVITLGDKTQIVGQSMYSEGKNSSGSTFKLLVDGGLCTDNDLNGTDIKGRVVLCTSLGIPPLMLFPVALKNVLDAGGSGLIFAQYTTDILDVTKNCNGTACVLVDLDTAQLISSYISGTSSPVAKIEPPRTVTGEGILAPKVAAFSSRGPSVDYPDIIKPDVAAPGSNILAAVKDGYKLESGTSMATPHVAGIVALLKALHPDWSPAAIKSAVVTTASVTDERGMPILAEGVPRKIADPFDYGSGNINPNRAADPGLIYDIDPTDYNKFFACTIKTSASCNATMLPRYHLNLPSIAVPDLRDPTTVSRTVRNVGEVNAVYHAEIQCPPGVKMVVEPSVLVFDAANKVHTFKVSFSPLWKLQGDYTFGSLTWHNDNKSVRIPIAVRITIQDFYADVA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.063745 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0795000 | SBH | 1.655893 | 3.647560 | 0.793562 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g58240 | SBH | 1.029743 | 1.701922 | 0.192245 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0795000 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0036660 | RBH | 0.109374 | 45.962090 | 1.169888 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0036150 | RBH | 0.318028 | 7.883012 | 1.466575 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0036520 | SBH | 0.155017 | 2.228694 | 1.142209 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0035940 | SBH | 0.034081 | 0.051771 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0035520 | SBH | 0.434912 | 7.533009 | 1.407781 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0555700 | SBH | 0.3195385 | 2.5669265 | 0.7247985 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0035260 | SBH | 0.000000 | 0.414529 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0552900 | RBH | 2.314852 | 11.575025 | 1.835868 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0018320 | SBH | 0.029619 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0035460 | RBH | 0.0 | 0.461859 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0035720 | RBH | 0.0 | 0.650577 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0035790 | RBH | 0.0 | 0.302974 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0035560 | SBH | 0.009298 | 1.984010 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G036050 | SBH | 0.000000 | 0.214938 | 0.201126 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0035770 | RBH | 0.000000 | 4.307582 | 0.842252 |
