Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_01g0034750 | OGI:01099150 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr01:34593199-34596217 | ||||||||
| Gene Symbol | PI64, Pi64, PISH, Pi sh, Pish, Pi-sh, Pish(t) | ||||||||||
| DNA seq | atgtccaatttacaccctaagaacagaaagctaatttgcaagcttgaagaattgaaggaaatcttggctgaagctaagagcttccgtagtctgtttggcatacaagcggttaatggttcagtgcatatggttactgctcccatcaggcctcatactaacaccacttcccttcctacatcgaaggtcattggtcgcaagaaggatcgtgatcttataatcgatactctctgcaagcatgcggatactgaagctagtgcagctaggtgctactcgactctggcaaTtgttggaattgggggtatgggaaaaactacgttagcacagtttgtctacaataatgagaaggtgatcaaatattttgatgccaggatgtgggtctgcatctcgcgcaaacttgatgtgcatcgacacacacaggagatcattgagtccgctggaatgggcgagtgcccacgtgttagtaatctcgatactctccagtgcaaattaagggacatgctgcaaagatcagagaggttcctgcttgtgttggatgatatttggtttgatgaatccaagaatgagatggagtgggactgggagcaactgctagctcctttagtttcttcacggaggggaagcaaaattctggtaacttctcgacggaatgcacttccagctgttctcgactgtaagaagcaTttttgtttgaagaacttaaaagatacagccttattggcgatcttcaaaggccatgccttcgctggtgctgAaaccaatgacccacagttgcgtaggaagttagaggagattgctgAgaagaTCtctaaaaggcttggacaatcaccTttggcagcgaaagctgtaggttctcagttgagcaggaaaaaGgatatcactacatggagagctgctttaaagagcgacagcttaagcgagacaagaaaggctctcttgtggagttatgagaagttagatccgcgtcttcagaggtgCTTTCTatattgcagcttatttccaaaagGCTactggtacgaaatttcctatatagttcacctttgggtggcagagggacTtgttgattcaagcaacagtgacatgaaaatggaagatattggcagggattacttcaatgagttggtatccgggtctttctttcaacaagtttctaagagCTggaatggaatatggtatattatgcacgatctcttccatgatttggcagagtctctatctagagaagatttctttagattagaGGatgacaaggtgaaagaaataCcatgcactgttcgtcatctgtctgttcgtgttaagagTATGAaaCTgcataagcaaaatatctgcAAGCTaaatcatttgcgtactgttatctgtattgacccactcatggacgACGGAaccgatgttttcgatcaggtacttcggaatcagaagaagttgcgagtactagatttgtcattttacaacagcagcaagTtgcctgaatctgtctgtgagctgaagcatcttcggtatttgaacatcatcaaaacgttcatttctgagttaccgagatcactgtgtactttgtacctcttagagtcTCTtaagttaaacaaCaaatgtaaGATCTTGCCCGatCTTGCCCgaaactctgcaacctaagttgcggcatcttgaagggtacattgatcaaatatcttcgacgccttgggaagcaccagtacctcaaattccgaatataggtaaaTtattttctctccaacatatcaatgaatttcacgtgcaaaagcagaagggctatgagttgcgacagctgagggcagccctaatgtgcgatcgatcgcccgccaatgggggtagcgataagattcgctaccccctcccccctccctccctccacctagtttccttttttggcaccgtattactttcctattttagtaaatttatacaactaaagtttatacacctcaagtttacacatctAaagtttagagacccaaagtttataagtcaaaAGtttatatatccgattcaaatttgaatttgaattcaaatttttttttatatatagtatttctatacatctaaagtttatacacctaaagtttattaaagtttatagaactaaagtttataagtcaaaagtttatatacccgtttcaaatttgaatttgaattatatctgattcaaatttgaatttgaattcaaatattttctatatatagtatttctatacatctaaagtttatacacctaaagtttatagacccaaagtttataagttaaaagtttacatacccgattcaaatttgaatttgaattcaaatattttctatatatagtatttttatacatctaaagtttatacacccaaagtttataagtcaaaaaatttacatacccgattcaaatttgaatttgaatttaaaTtttttatatatagtatttctatacataaatttttctaactttttgtttttttttaaaaaaatttgtgtggtgtactgtagtaggggaggagggaggagtgtatctggtagtatagggaggggcgggtgatcgctgggcgggtgggggagcgatcacccacccattagcatttcccgacagctgagggacatgaacgagcttggtggcaggttgcgtatcatgaatctcgagaatgtgacgggttaggatgaagcattggagtcgatgctacatcacaagagttatcttaaagatttacagcttgtctggagttgcaaaaatgaattgaatgtagaggatagtttgtatttagagtcagagattctcgaaggtctggtgccaccgccccaactggaagggctcgcaatcgaaggttacagatgtgccacatatccaagctggttgaaggttccccgttttgagaatttggtatcttttgagcttgagaattgcagcgcattagaggatgttccacttaataccgagccccttagtcactgtgctgagatttcccttaaaaatatctcaaacttgaaaacattgccatgttttccagcaggtagggaggagggaggatggtaa
More
|
||||||||||
| CDS seq | atgtccaatttacaccctaagaacagaaagctaatttgcaagcttgaagaattgaaggaaatcttggctgaagctaagagcttccgtagtctgtttggcatacaagcggttaatggttcagtgcatatggttactgctcccatcaggcctcatactaacaccacttcccttcctacatcgaaggtcattggtcgcaagaaggatcgtgatcttataatcgatactctctgcaagcatgcggatactgaagctagtgcagctaggtgctactcgactctggcaaTtgttggaattgggggtatgggaaaaactacgttagcacagtttgtctacaataatgagaaggtgatcaaatattttgatgccaggatgtgggtctgcatctcgcgcaaacttgatgtgcatcgacacacacaggagatcattgagtccgctggaatgggcgagtgcccacgtgttagtaatctcgatactctccagtgcaaattaagggacatgctgcaaagatcagagaggttcctgcttgtgttggatgatatttggtttgatgaatccaagaatgagatggagtgggactgggagcaactgctagctcctttagtttcttcacggaggggaagcaaaattctggtaacttctcgacggaatgcacttccagctgttctcgactgtaagaagcaTttttgtttgaagaacttaaaagatacagccttattggcgatcttcaaaggccatgccttcgctggtgctgAaaccaatgacccacagttgcgtaggaagttagaggagattgctgAgaagaTCtctaaaaggcttggacaatcaccTttggcagcgaaagctgtaggttctcagttgagcaggaaaaaGgatatcactacatggagagctgctttaaagagcgacagcttaagcgagacaagaaaggctctcttgtggagttatgagaagttagatccgcgtcttcagaggtgCTTTCTatattgcagcttatttccaaaagGCTactggtacgaaatttcctatatagttcacctttgggtggcagagggacTtgttgattcaagcaacagtgacatgaaaatggaagatattggcagggattacttcaatgagttggtatccgggtctttctttcaacaagtttctaagagCTggaatggaatatggtatattatgcacgatctcttccatgatttggcagagtctctatctagagaagatttctttagattagaGGatgacaaggtgaaagaaataCcatgcactgttcgtcatctgtctgttcgtgttaagagTATGAaaCTgcataagcaaaatatctgcAAGCTaaatcatttgcgtactgttatctgtattgacccactcatggacgACGGAaccgatgttttcgatcaggtacttcggaatcagaagaagttgcgagtactagatttgtcattttacaacagcagcaagTtgcctgaatctgtctgtgagctgaagcatcttcggtatttgaacatcatcaaaacgttcatttctgagttaccgagatcactgtgtactttgtacctcttagagtcTCTtaagttaaacaaCaaatggtacattgatcaaatatcttcgacgccttgggaagcaccagtacctcaaattccgaatatagaggatagtttgtatttagagtcagagattctcgaaggtctggtgccaccgccccaactggaagggctcgcaatcgaaggttacagatgtgccacatatccaagctggttgaaggttccccgttttgagaatttggtatcttttgagcttgagaattgcagcgcattagaggatgttccacttaataccgagccccttagtcactgtgctgagatttcccttaaaaatatctcaaacttgaaaacattgccatgttttccagcaggtagggaggagggaggatggtaa
More
|
||||||||||
| Protein seq | MSNLHPKNRKLICKLEELKEILAEAKSFRSLFGIQAVNGSVHMVTAPIRPHTNTTSLPTSKVIGRKKDRDLIIDTLCKHADTEASAARCYSTLAIVGIGGMGKTTLAQFVYNNEKVIKYFDARMWVCISRKLDVHRHTQEIIESAGMGECPRVSNLDTLQCKLRDMLQRSERFLLVLDDIWFDESKNEMEWDWEQLLAPLVSSRRGSKILVTSRRNALPAVLDCKKHFCLKNLKDTALLAIFKGHAFAGAETNDPQLRRKLEEIAEKISKRLGQSPLAAKAVGSQLSRKKDITTWRAALKSDSLSETRKALLWSYEKLDPRLQRCFLYCSLFPKGYWYEISYIVHLWVAEGLVDSSNSDMKMEDIGRDYFNELVSGSFFQQVSKSWNGIWYIMHDLFHDLAESLSREDFFRLEDDKVKEIPCTVRHLSVRVKSMKLHKQNICKLNHLRTVICIDPLMDDGTDVFDQVLRNQKKLRVLDLSFYNSSKLPESVCELKHLRYLNIIKTFISELPRSLCTLYLLESLKLNNKWYIDQISSTPWEAPVPQIPNIEDSLYLESEILEGLVPPPQLEGLAIEGYRCATYPSWLKVPRFENLVSFELENCSALEDVPLNTEPLSHCAEISLKNISNLKTLPCFPAGREEGGW |
||||||||||
| Function | Putative disease resistance protein At3g14460 [UniProtKB/Swiss-Prot:Q9LRR5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0034750 | OsLima_01g0034750.01 | Chr01 | 34593199 | 34596217 | + | NAM | ||
| CDS seq | atgtccaatttacaccctaagaacagaaagctaatttgcaagcttgaagaattgaaggaaatcttggctgaagctaagagcttccgtagtctgtttggcatacaagcggttaatggttcagtgcatatggttactgctcccatcaggcctcatactaacaccacttcccttcctacatcgaaggtcattggtcgcaagaaggatcgtgatcttataatcgatactctctgcaagcatgcggatactgaagctagtgcagctaggtgctactcgactctggcaaTtgttggaattgggggtatgggaaaaactacgttagcacagtttgtctacaataatgagaaggtgatcaaatattttgatgccaggatgtgggtctgcatctcgcgcaaacttgatgtgcatcgacacacacaggagatcattgagtccgctggaatgggcgagtgcccacgtgttagtaatctcgatactctccagtgcaaattaagggacatgctgcaaagatcagagaggttcctgcttgtgttggatgatatttggtttgatgaatccaagaatgagatggagtgggactgggagcaactgctagctcctttagtttcttcacggaggggaagcaaaattctggtaacttctcgacggaatgcacttccagctgttctcgactgtaagaagcaTttttgtttgaagaacttaaaagatacagccttattggcgatcttcaaaggccatgccttcgctggtgctgAaaccaatgacccacagttgcgtaggaagttagaggagattgctgAgaagaTCtctaaaaggcttggacaatcaccTttggcagcgaaagctgtaggttctcagttgagcaggaaaaaGgatatcactacatggagagctgctttaaagagcgacagcttaagcgagacaagaaaggctctcttgtggagttatgagaagttagatccgcgtcttcagaggtgCTTTCTatattgcagcttatttccaaaagGCTactggtacgaaatttcctatatagttcacctttgggtggcagagggacTtgttgattcaagcaacagtgacatgaaaatggaagatattggcagggattacttcaatgagttggtatccgggtctttctttcaacaagtttctaagagCTggaatggaatatggtatattatgcacgatctcttccatgatttggcagagtctctatctagagaagatttctttagattagaGGatgacaaggtgaaagaaataCcatgcactgttcgtcatctgtctgttcgtgttaagagTATGAaaCTgcataagcaaaatatctgcAAGCTaaatcatttgcgtactgttatctgtattgacccactcatggacgACGGAaccgatgttttcgatcaggtacttcggaatcagaagaagttgcgagtactagatttgtcattttacaacagcagcaagTtgcctgaatctgtctgtgagctgaagcatcttcggtatttgaacatcatcaaaacgttcatttctgagttaccgagatcactgtgtactttgtacctcttagagtcTCTtaagttaaacaaCaaatggtacattgatcaaatatcttcgacgccttgggaagcaccagtacctcaaattccgaatatagaggatagtttgtatttagagtcagagattctcgaaggtctggtgccaccgccccaactggaagggctcgcaatcgaaggttacagatgtgccacatatccaagctggttgaaggttccccgttttgagaatttggtatcttttgagcttgagaattgcagcgcattagaggatgttccacttaataccgagccccttagtcactgtgctgagatttcccttaaaaatatctcaaacttgaaaacattgccatgttttccagcaggtagggaggagggaggatggtaa
More
|
|||||||
| Protein seq | MSNLHPKNRKLICKLEELKEILAEAKSFRSLFGIQAVNGSVHMVTAPIRPHTNTTSLPTSKVIGRKKDRDLIIDTLCKHADTEASAARCYSTLAIVGIGGMGKTTLAQFVYNNEKVIKYFDARMWVCISRKLDVHRHTQEIIESAGMGECPRVSNLDTLQCKLRDMLQRSERFLLVLDDIWFDESKNEMEWDWEQLLAPLVSSRRGSKILVTSRRNALPAVLDCKKHFCLKNLKDTALLAIFKGHAFAGAETNDPQLRRKLEEIAEKISKRLGQSPLAAKAVGSQLSRKKDITTWRAALKSDSLSETRKALLWSYEKLDPRLQRCFLYCSLFPKGYWYEISYIVHLWVAEGLVDSSNSDMKMEDIGRDYFNELVSGSFFQQVSKSWNGIWYIMHDLFHDLAESLSREDFFRLEDDKVKEIPCTVRHLSVRVKSMKLHKQNICKLNHLRTVICIDPLMDDGTDVFDQVLRNQKKLRVLDLSFYNSSKLPESVCELKHLRYLNIIKTFISELPRSLCTLYLLESLKLNNKWYIDQISSTPWEAPVPQIPNIEDSLYLESEILEGLVPPPQLEGLAIEGYRCATYPSWLKVPRFENLVSFELENCSALEDVPLNTEPLSHCAEISLKNISNLKTLPCFPAGREEGGW
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0781100 | SBH | 0.181013 | 0.772795 | 0.469071 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g57270 | SBH | 0.117409 | 0.502819 | 0.104869 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0781100 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0035900 | RBH | 0.000000 | 0.000000 | 0.126883 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0035400 | RBH | 0.017783 | 6.563830 | 0.378130 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0035770 | RBH | 0.116697 | 102.620399 | 3.217223 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0035170 | RBH | 0.027790 | 0.836313 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0034890 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0546900 | RBH | 0.0772995 | 5.57051 | 0.223785 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0034620 | SBH | 0.092537 | 0.325126 | 0.044936 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0542700 | SBH | 0.9147375 | 15.4966525 | 1.6470945 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0034760 | RBH | 0.064270 | 0.125168 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0034820 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0035050 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0035150 | RBH | 0.0 | 0.058340 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0034950 | RBH | 0.057706 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G035410 | SBH | 0.0 | 0.216196 | 0.039175 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0035070 | RBH | 0.0 | 2.203485 | 0.0 |
