Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_01g0034650 | OGI:01098930 | 15/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr01:34512778-34515092 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ataccagctggccagctcgagccttctcgttggtggtcaacccaaatgtagtaagcttttgtatctcttttccaaggctcgcctggcctgggggaggagaacccgagcttctccgccatggggatctccgccgccgcccccttccttctcctcgtcgccctgctgctgctgctgccgtcccccgccgcggccttctccttcacctacaacttcacctcggcggacacggcgccgtcgggcatcgcgttccagggcgacgccttcttcaacaagttcatccgcctgacccgcgacgagcgcatcggtcccatcaccagcagcgccgggagggccttcttctcgcgccccgtcccgctctgcgaccccgtctcccgccgccgcgcctccttctccaccgccttctccttctccatcgccgcccccgacccctccgccgcctccggcgatggcctcgccttcttcctctcccccttcccctccgtcctccccaacagctccgccggcggcctcctcggcctcttcaactcctcctcacgcgggggcgcagcggcggcgcacccgcgcccgctcgtcgccgtcgaattcgacacctacaagaacgagtgggaccccagcgacgaccacgtcggcgttgacctcggcgggattgtctccgccgccaccgtcgactggcccaccagcatgaaggacggccggagggcgcacgcgcgcgtcgcgtacgacggccaggccaagaacctcaccgtcgcgctctcctacggcgacgcggcggcggcggcggccctgacggaccccgtgctctggtacgccgtcgatctgatggagtacctccccgacgccgtcgccgtcggcttctccgccgccacgggcgaggccgccgagctgcaccaggtgctgtactgggagttcacctccagcatcgacaccaaggaggagacggtaatcctgtgggttgtgttggggctctgcggtttgcttctcgtgctcgtcgccgctggcgtgctctggttcgtgtcgcaatggaggaaagccggagagctcgccgatggcgacatcgacgacgagatggggtacgacgagctcgccgacgaggagttcttcgtggagagcgggccgaggcggttccggtacagcgaccttgcggcggcgaccaagaatttctccgacgagaggaagctcgggcagggcggcttcggcgccgtgtacaggggcttcttgaaggagctcggtttggcggtggcgatcaagagggtgtccaagggctcgacgcaggggcgcaaggagtacgcggcggaggtgcgcatcatcagccagctgcgccaccgccacctcgtccgcctcgtcggctggtgccacgagcaccgcggcgacttcctgttggtgtacgagctcatgcccaacggcagcgtcgaccgccacctctacggcggcggcggcggcagcaagaaggccggcggcgcggcgccgcccctctcctggccgacgcggtacaacgtcgcgctgggcctcgcgtcggcgctgctctacctccacgaggagtgcccgcagtgcgtggtgcaccgcgacatcaagccgagcaacgtcatgctcgacgccaccttcagcgccaagctcggcgacttcggcctcgccaagctcgtcgagcacggcagccagccgcacaccaccgtgctggccggcacgctgggctacctggcgccggagtgcgtcatcacgggcagggccagccgggagtcggacgtgtacagcttcggcgtcgtggcgctggagatcgcgtgcggccgccgccccgcggagctcgacgaggaggacccgagcaaggcgaggctggtgccgtgggtgtgggagctctacggcaagagagccatcctcgaagccgcggaccagaggctcaatggcaagttcgacctcgagcagatggagcggctcatggtggtaggattgtggtgcgcgcaccccgaccacgcgcaccggccgagcatcaggcaggcgctgaacgtgctcaagttcgaggcgccgctgccgtcgctgccgcccaagatgccggtgccgtcgtacgtcccgccgccggacttggtcgctccggtgtccgtcgaaggcacgtcgagcaccgatggcccaggcgtcagtgagtgtggatcgtctgggtccaatgccggaggaggataggggatcaatgataggcttctcgatccatgagcaagatttttttggggctcaattcatcaactgtagctatgccaaaggttttctctttttttttccctttttgtgtctgatttttcaggcttagcttcacggcatacagaagtggc
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| CDS seq | atggggatctccgccgccgcccccttccttctcctcgtcgccctgctgctgctgctgccgtcccccgccgcggccttctccttcacctacaacttcacctcggcggacacggcgccgtcgggcatcgcgttccagggcgacgccttcttcaacaagttcatccgcctgacccgcgacgagcgcatcggtcccatcaccagcagcgccgggagggccttcttctcgcgccccgtcccgctctgcgaccccgtctcccgccgccgcgcctccttctccaccgccttctccttctccatcgccgcccccgacccctccgccgcctccggcgatggcctcgccttcttcctctcccccttcccctccgtcctccccaacagctccgccggcggcctcctcggcctcttcaactcctcctcacgcgggggcgcagcggcggcgcacccgcgcccgctcgtcgccgtcgaattcgacacctacaagaacgagtgggaccccagcgacgaccacgtcggcgttgacctcggcgggattgtctccgccgccaccgtcgactggcccaccagcatgaaggacggccggagggcgcacgcgcgcgtcgcgtacgacggccaggccaagaacctcaccgtcgcgctctcctacggcgacgcggcggcggcggcggccctgacggaccccgtgctctggtacgccgtcgatctgatggagtacctccccgacgccgtcgccgtcggcttctccgccgccacgggcgaggccgccgagctgcaccaggtgctgtactgggagttcacctccagcatcgacaccaaggaggagacggtaatcctgtgggttgtgttggggctctgcggtttgcttctcgtgctcgtcgccgctggcgtgctctggttcgtgtcgcaatggaggaaagccggagagctcgccgatggcgacatcgacgacgagatggggtacgacgagctcgccgacgaggagttcttcgtggagagcgggccgaggcggttccggtacagcgaccttgcggcggcgaccaagaatttctccgacgagaggaagctcgggcagggcggcttcggcgccgtgtacaggggcttcttgaaggagctcggtttggcggtggcgatcaagagggtgtccaagggctcgacgcaggggcgcaaggagtacgcggcggaggtgcgcatcatcagccagctgcgccaccgccacctcgtccgcctcgtcggctggtgccacgagcaccgcggcgacttcctgttggtgtacgagctcatgcccaacggcagcgtcgaccgccacctctacggcggcggcggcggcagcaagaaggccggcggcgcggcgccgcccctctcctggccgacgcggtacaacgtcgcgctgggcctcgcgtcggcgctgctctacctccacgaggagtgcccgcagtgcgtggtgcaccgcgacatcaagccgagcaacgtcatgctcgacgccaccttcagcgccaagctcggcgacttcggcctcgccaagctcgtcgagcacggcagccagccgcacaccaccgtgctggccggcacgctgggctacctggcgccggagtgcgtcatcacgggcagggccagccgggagtcggacgtgtacagcttcggcgtcgtggcgctggagatcgcgtgcggccgccgccccgcggagctcgacgaggaggacccgagcaaggcgaggctggtgccgtgggtgtgggagctctacggcaagagagccatcctcgaagccgcggaccagaggctcaatggcaagttcgacctcgagcagatggagcggctcatggtggtaggattgtggtgcgcgcaccccgaccacgcgcaccggccgagcatcaggcaggcgctgaacgtgctcaagttcgaggcgccgctgccgtcgctgccgcccaagatgccggtgccgtcgtacgtcccgccgccggacttggtcgctccggtgtccgtcgaaggcacgtcgagcaccgatggcccaggcgtcagtgagtgtggatcgtctgggtccaatgccggaggaggatag
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| Protein seq | MGISAAAPFLLLVALLLLLPSPAAAFSFTYNFTSADTAPSGIAFQGDAFFNKFIRLTRDERIGPITSSAGRAFFSRPVPLCDPVSRRRASFSTAFSFSIAAPDPSAASGDGLAFFLSPFPSVLPNSSAGGLLGLFNSSSRGGAAAAHPRPLVAVEFDTYKNEWDPSDDHVGVDLGGIVSAATVDWPTSMKDGRRAHARVAYDGQAKNLTVALSYGDAAAAAALTDPVLWYAVDLMEYLPDAVAVGFSAATGEAAELHQVLYWEFTSSIDTKEETVILWVVLGLCGLLLVLVAAGVLWFVSQWRKAGELADGDIDDEMGYDELADEEFFVESGPRRFRYSDLAAATKNFSDERKLGQGGFGAVYRGFLKELGLAVAIKRVSKGSTQGRKEYAAEVRIISQLRHRHLVRLVGWCHEHRGDFLLVYELMPNGSVDRHLYGGGGGSKKAGGAAPPLSWPTRYNVALGLASALLYLHEECPQCVVHRDIKPSNVMLDATFSAKLGDFGLAKLVEHGSQPHTTVLAGTLGYLAPECVITGRASRESDVYSFGVVALEIACGRRPAELDEEDPSKARLVPWVWELYGKRAILEAADQRLNGKFDLEQMERLMVVGLWCAHPDHAHRPSIRQALNVLKFEAPLPSLPPKMPVPSYVPPPDLVAPVSVEGTSSTDGPGVSECGSSGSNAGGG |
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| Function | L-type lectin-domain containing receptor kinase IX.1 [UniProtKB/Swiss-Prot:Q9LXA5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0034650 | OsLima_01g0034650.01 | Chr01 | 34512778 | 34515092 | + | NAM | ||
| CDS seq | atggggatctccgccgccgcccccttccttctcctcgtcgccctgctgctgctgctgccgtcccccgccgcggccttctccttcacctacaacttcacctcggcggacacggcgccgtcgggcatcgcgttccagggcgacgccttcttcaacaagttcatccgcctgacccgcgacgagcgcatcggtcccatcaccagcagcgccgggagggccttcttctcgcgccccgtcccgctctgcgaccccgtctcccgccgccgcgcctccttctccaccgccttctccttctccatcgccgcccccgacccctccgccgcctccggcgatggcctcgccttcttcctctcccccttcccctccgtcctccccaacagctccgccggcggcctcctcggcctcttcaactcctcctcacgcgggggcgcagcggcggcgcacccgcgcccgctcgtcgccgtcgaattcgacacctacaagaacgagtgggaccccagcgacgaccacgtcggcgttgacctcggcgggattgtctccgccgccaccgtcgactggcccaccagcatgaaggacggccggagggcgcacgcgcgcgtcgcgtacgacggccaggccaagaacctcaccgtcgcgctctcctacggcgacgcggcggcggcggcggccctgacggaccccgtgctctggtacgccgtcgatctgatggagtacctccccgacgccgtcgccgtcggcttctccgccgccacgggcgaggccgccgagctgcaccaggtgctgtactgggagttcacctccagcatcgacaccaaggaggagacggtaatcctgtgggttgtgttggggctctgcggtttgcttctcgtgctcgtcgccgctggcgtgctctggttcgtgtcgcaatggaggaaagccggagagctcgccgatggcgacatcgacgacgagatggggtacgacgagctcgccgacgaggagttcttcgtggagagcgggccgaggcggttccggtacagcgaccttgcggcggcgaccaagaatttctccgacgagaggaagctcgggcagggcggcttcggcgccgtgtacaggggcttcttgaaggagctcggtttggcggtggcgatcaagagggtgtccaagggctcgacgcaggggcgcaaggagtacgcggcggaggtgcgcatcatcagccagctgcgccaccgccacctcgtccgcctcgtcggctggtgccacgagcaccgcggcgacttcctgttggtgtacgagctcatgcccaacggcagcgtcgaccgccacctctacggcggcggcggcggcagcaagaaggccggcggcgcggcgccgcccctctcctggccgacgcggtacaacgtcgcgctgggcctcgcgtcggcgctgctctacctccacgaggagtgcccgcagtgcgtggtgcaccgcgacatcaagccgagcaacgtcatgctcgacgccaccttcagcgccaagctcggcgacttcggcctcgccaagctcgtcgagcacggcagccagccgcacaccaccgtgctggccggcacgctgggctacctggcgccggagtgcgtcatcacgggcagggccagccgggagtcggacgtgtacagcttcggcgtcgtggcgctggagatcgcgtgcggccgccgccccgcggagctcgacgaggaggacccgagcaaggcgaggctggtgccgtgggtgtgggagctctacggcaagagagccatcctcgaagccgcggaccagaggctcaatggcaagttcgacctcgagcagatggagcggctcatggtggtaggattgtggtgcgcgcaccccgaccacgcgcaccggccgagcatcaggcaggcgctgaacgtgctcaagttcgaggcgccgctgccgtcgctgccgcccaagatgccggtgccgtcgtacgtcccgccgccggacttggtcgctccggtgtccgtcgaaggcacgtcgagcaccgatggcccaggcgtcagtgagtgtggatcgtctgggtccaatgccggaggaggatag
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| Protein seq | MGISAAAPFLLLVALLLLLPSPAAAFSFTYNFTSADTAPSGIAFQGDAFFNKFIRLTRDERIGPITSSAGRAFFSRPVPLCDPVSRRRASFSTAFSFSIAAPDPSAASGDGLAFFLSPFPSVLPNSSAGGLLGLFNSSSRGGAAAAHPRPLVAVEFDTYKNEWDPSDDHVGVDLGGIVSAATVDWPTSMKDGRRAHARVAYDGQAKNLTVALSYGDAAAAAALTDPVLWYAVDLMEYLPDAVAVGFSAATGEAAELHQVLYWEFTSSIDTKEETVILWVVLGLCGLLLVLVAAGVLWFVSQWRKAGELADGDIDDEMGYDELADEEFFVESGPRRFRYSDLAAATKNFSDERKLGQGGFGAVYRGFLKELGLAVAIKRVSKGSTQGRKEYAAEVRIISQLRHRHLVRLVGWCHEHRGDFLLVYELMPNGSVDRHLYGGGGGSKKAGGAAPPLSWPTRYNVALGLASALLYLHEECPQCVVHRDIKPSNVMLDATFSAKLGDFGLAKLVEHGSQPHTTVLAGTLGYLAPECVITGRASRESDVYSFGVVALEIACGRRPAELDEEDPSKARLVPWVWELYGKRAILEAADQRLNGKFDLEQMERLMVVGLWCAHPDHAHRPSIRQALNVLKFEAPLPSLPPKMPVPSYVPPPDLVAPVSVEGTSSTDGPGVSECGSSGSNAGGG
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.048821 | 0.104628 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0779300 | RBH | 0.700633 | 0.409208 | 0.634083 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g57100 | RBH | 0.457147 | 0.265550 | 0.157486 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0779300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0035800 | RBH | 0.0 | 2.175902 | 0.525878 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0035300 | RBH | 0.0 | 0.880758 | 0.130647 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0035670 | RBH | 0.618417 | 0.897166 | 0.532875 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0035070 | RBH | 0.072613 | 0.024057 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0034790 | RBH | 1.765395 | 5.765265 | 0.493980 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0706400 | SBH | 0.7110305 | 2.200169 | 2.1693475 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0034520 | RBH | 0.054510 | 0.206864 | 0.117945 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0541400 | RBH | 1.3812715 | 5.873421 | 2.577591 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0034720 | RBH | 0.281199 | 10.927666 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0034950 | RBH | 1.144409 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0035050 | RBH | 0.198844 | 0.141342 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0034850 | RBH | 0.250524 | 0.836349 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G035310 | RBH | 0.086430 | 0.0 | 0.489034 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0034970 | RBH | 0.0 | 0.000000 | 0.0 |
