Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_01g0033660 | OGI:01097030 | 7/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr01:33743571-33745716 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ctaccactggctcaaagtgtggcggtcgtcgacgggataccggatagaatgtgtgacctggatcaggagtgcatcgactgcaggttaagcacttgggtgaaactgaccgtccaagaaccagcgaacgtttaggattctctgaaagcttcccttcatcaagatttggttacaattttggcgcaattgcatctgcgcccccactttcaaacccaattgctgttttatcttcactttttagggacatgtataccctctgcatccagcaacatcgtgcaggggaggacctggaacaagggacggggaggagggcgccgcaggcgccgacgtcgacgtcgagcaggatggggtcgtcgccggccacgggagcagtagcagcaaaagcgatggtggggacaggcggaggcgggggctgacgacgatgcctcggcgtggaagccagcggccacgggagcagcagcagcagccgccgccgtcgcccgcacgccgttgccgcgcgcacgccctcgccgccgcccgccctcgccgcggccgccgccgtcgcccgcacgccctcgccgcggctgccgcccccgagcgcacgcccttgccgccgcccgccctcgccgcagccgccgccgcgccgcgcgcaagctctcgccgcccgcccgccctcgccgcggcggccgccctcgccgtcgccgtcaccgcgccttccgccggagccgccgccgtcgccgcgccttccgccggagccgtcgccgtcgccgcgcctcccgccggagccgcgcacgccgctgccggaacggtcgccgtcgctgcacggtgcttgacctgagcagagctgtgcttgcctgcttggatccttatgagaaagactacacaacggtatataccacttatccctcatgccgcggccccacgtgctggcttctcccgagtatgtcgcatgctgctaggattatcatcacgcaggtttgctgtgtgtatcagtgtatagtcttgttcctgacagctagctagtacctagcatgcctaagtcatgcctttgatactagcctagctagtaaataaaaccagaggtactactagcttgttgtgcatgccaaatccctgtaatagttactagtagatctgtaccctagctatgtagggtacttattatggaggagcctagtagcctagctatgtgtctaagatgggttgcatctatttgttgtatcctataccatgcacggattagaccggacaaataattacctagattatacatggatacaatggattattctaattagatatgtcatgttgggctcttggttataccacatcttagaaactctagtatgtgatacatagatgctagattatcatatatgatatccaggtattgggtcgaatacctaggtaccaagtatgaaacctataaatacaagatctgatgctgagttatccggcatgatacctataagtaccggatccgataactaggtatcgtgtatgatacctatgagtaccagattggatacccgggtatcgggtatctgatctcatacctatgagtatttgttccaatacctatacgtaacgggtcggatacccaggtaccgagtatgatacttatgaataccaagtctgatacctaagtatcgggtctgatacctatgagtaccggattcgatacctaggtcaggtttgatacttatgagtatcggatccggtatcgcgcatgatacctatgagtattggatcggatacccgggtatcgggtatctgatcttatacctatgagtactggatccaatacctagataccgggttgatacatattagtagaggatctgataccaaatatagggtgtgatggtacgagacttcagatgtgataccactaattctaatatttatgggttatatacttctattcaacaatcaaataaaaagatggaccatgcatagctaggccaaaaagtacagccaaacttgctcacgtgctgctgacatgctttgtttaggctaatgctactagctctagtgcttaattctaactttactagttgaagcaggtgttagacccatatggacctaaagaggtgtagaagtagtgctgtattagagtatttcatagctattttgtactgtaggagaaaagagacctctcgtcagtcat
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| CDS seq | atgactgacgagagcgacggcgaccgttccggcagcggcgtgcgcggctccggcgggaggcgcggcgacggcgacggctccggcggaaggcgcggcgacggcggcggctccggcggaaggcgcggtgacggcgacggcgagggcggccgccgcggcgagggcgggcgggcggcgagagcttgcgcgcggcgcggcggcggctgcggcgagggcgggcggcggcaagggcgtgcgctcgggggcggcagccgcggcgagggcgtgcgggcgacggcggcggccgcggcgagggcgggcggcggcgagggcgtgcgcgcggcaacggcgtgcgggcgacggcggcggctgctgctgctgctcccgtggccgctggcttccacgccgaggcatcgtcgtcagcccccgcctccgcctgtccccaccatcgcttttgctgctactgctcccgtggccggcgacgaccccatcctgctcgacgtcgacgtcggcgcctgcggcgccctcctccccgtcacacattctatccggtatcccgtcgacgaccgccacactttgagccagtggtag
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| Protein seq | MTDESDGDRSGSGVRGSGGRRGDGDGSGGRRGDGGGSGGRRGDGDGEGGRRGEGGRAARACARRGGGCGEGGRRQGRALGGGSRGEGVRATAAAAARAGGGEGVRAATACGRRRRLLLLLPWPLASTPRHRRQPPPPPVPTIAFAATAPVAGDDPILLDVDVGACGALLPVTHSIRYPVDDRHTLSQW |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0033660 | OsLima_01g0033660.01 | Chr01 | 33743571 | 33745716 | - | NAM | ||
| CDS seq | atgactgacgagagcgacggcgaccgttccggcagcggcgtgcgcggctccggcgggaggcgcggcgacggcgacggctccggcggaaggcgcggcgacggcggcggctccggcggaaggcgcggtgacggcgacggcgagggcggccgccgcggcgagggcgggcgggcggcgagagcttgcgcgcggcgcggcggcggctgcggcgagggcgggcggcggcaagggcgtgcgctcgggggcggcagccgcggcgagggcgtgcgggcgacggcggcggccgcggcgagggcgggcggcggcgagggcgtgcgcgcggcaacggcgtgcgggcgacggcggcggctgctgctgctgctcccgtggccgctggcttccacgccgaggcatcgtcgtcagcccccgcctccgcctgtccccaccatcgcttttgctgctactgctcccgtggccggcgacgaccccatcctgctcgacgtcgacgtcggcgcctgcggcgccctcctccccgtcacacattctatccggtatcccgtcgacgaccgccacactttgagccagtggtag
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| Protein seq | MTDESDGDRSGSGVRGSGGRRGDGDGSGGRRGDGGGSGGRRGDGDGEGGRRGEGGRAARACARRGGGCGEGGRRQGRALGGGSRGEGVRATAAAAARAGGGEGVRAATACGRRRRLLLLLPWPLASTPRHRRQPPPPPVPTIAFAATAPVAGDDPILLDVDVGACGALLPVTHSIRYPVDDRHTLSQW |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g55880 | SBH | 2.426498 | 1.364876 | 0.185629 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0034690 | RBH | 0.000000 | 0.000000 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0033760 | RBH | 0.580016 | 0.000000 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0534800 | RBH | 3.5990775 | 1.9643345 | 2.850724 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0530300 | SBH | 6.702926 | 5.2628705 | 11.107777 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0033710 | RBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0033970 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0034010 | RBH | 0.000000 | 0.000000 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0033860 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
