Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_01g0033440 | OGI:01096650 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr01:33621689-33623282 | ||||||||
| Gene Symbol | OsEnS-15, EnS-15 | ||||||||||
| DNA seq | gtaaggtcccaagctgatacaaccgaggtttacgatatctctaataagttatttcaatgtaccggagtattagttgtccgtcgagttattgaacctagaggtcttctactacctcattactccaatggagcaactctagtgtatatcatccaaggttcgtgcatctatttaagtatatattggataattgttgcttttatatccttttattaatgtggaatcctggatttataggtagaggtgtaacaggaccaactttcccaggatgtcctgaggcttaccaacaatagtttcaacaattcgggcaaaaccaatcattcaagggacaaagccaaaattataaattcatagatgaacatcaacagatccatcgtttcagacagggagatgttgttgcattgcctgctggtgtagctcattggtgctacaatgatggtgatgtaccaattgttgccatatacgtcactgatatatacaacagtgctaaccagcttgatcctagaaaaaaggtaattaatcatagcttatttattgccaacaacccaagcattctttgaattcgtttgatttattgcagttctctctttgacatgttgatttattttgtttatggattgataggatttctttttagctggcaacaataagattggtcaacaattgtatagatccaaggcaagggagagttcgaagaacatctttgatggatttagtgttgaactgcttagtgaggctcttggcattagcagtggagtagcaaggcaactccaatgtcaaaatgaccaacgcggagaaattgttcttgtcgagcatgggcttgcatttctaaaaccatatgcatcagtgcaagagcaacaacaagaacaggtgcaaccaagtgagtatagacaaacacaatatcaacaaaaacaatttcaaggtggtcactctaatggtttggatgagaccttttgtaccatgagggtaagatagaatatcgacaacccgaacctcgctaatacatacaacactagagcaggaaggatcacatatctaaatgtgcagaagtttccaattcttaatcttctacaaatgagtaccgtgaaagtaaatttgtaccaggtaaaatcacaagatatattatcttaacaaagaaaagctttaaaaaaatatgctgacaactttttataatatttttgttgtagaacgcgctcctttcacctttttggaacatcaatgctcatagcattgtctatattactcaaggtcgtgccgggttcaagttgtcaacaacaatggaaagacagtgtttgatggagaggttcgtcctgggcagctgctaattataccacaacaccatgtagttgtgaaaaaagcacaaagagaaggatgcttatatattgcattcaaaaccaaccctaattccattgttagccaaatcgtgggaaagaattccatcttccgtgcacttcctaacaatgttttggcaaatgcatatcgtatctcaagagaagaagctaggagactcaagcacaacaggagagtggagtcaggcgtgttcactcctagtcatgcctacaggagcttccaagatatcatgactgcatcattatag
More
|
||||||||||
| CDS seq | gtaaggtcccaagctgatacaaccgaggtttacgatatctctaataagttatttcaatgtaccggagtattagttgtccgtcgagttattgaacctagaggtcttctactacctcattactccaatggagcaactctagtgtatatcatccaagatgaacatcaacagatccatcgtttcagacagggagatgttgttgcattgcctgctggtgtagctcattggtgctacaatgatggtgatgtaccaattgttgccatatacgtcactgatatatacaacagtgctaaccagcttgatcctagaaaaaaggatttctttttagctggcaacaataagattggtcaacaattgtatagatccaaggcaagggagagttcgaagaacatctttgatggatttagtgttgaactgcttagtgaggctcttggcattagcagtggagtagcaaggcaactccaatgtcaaaatgaccaacgcggagaaattgttcttgtcgagcatgggcttgcatttctaaaaccatatgcatcagtgcaagagcaacaacaagaacaggtgcaaccaagtgagtatagacaaacacaatatcaacaaaaacaatttcaaggtggtcactctaatggtttggatgagaccttttgtaccatgaggaatatcgacaacccgaacctcgctaatacatacaacactagagcaggaaggatcacatatctaaatgtgcagaagtttccaattcttaatcttctacaaatgagtaccgtgaaagtaaatttgtaccagaacgcgctcctttcacctttttggaacatcaatgctcatagcattgtctatattactcaaggtcgtgccgggttcaagttgtcaacaacaatggaaagacagtgtttgatggagagccaaatcgtgggaaagaattccatcttccgtgcacttcctaacaatgttttggcaaatgcatatcgtatctcaagagaagaagctaggagactcaagcacaacaggagagtggagtcaggcgtgttcactcctagtcatgcctacaggagcttccaagatatcatgactgcatcattatag
More
|
||||||||||
| Protein seq | VRSQADTTEVYDISNKLFQCTGVLVVRRVIEPRGLLLPHYSNGATLVYIIQDEHQQIHRFRQGDVVALPAGVAHWCYNDGDVPIVAIYVTDIYNSANQLDPRKKDFFLAGNNKIGQQLYRSKARESSKNIFDGFSVELLSEALGISSGVARQLQCQNDQRGEIVLVEHGLAFLKPYASVQEQQQEQVQPSEYRQTQYQQKQFQGGHSNGLDETFCTMRNIDNPNLANTYNTRAGRITYLNVQKFPILNLLQMSTVKVNLYQNALLSPFWNINAHSIVYITQGRAGFKLSTTMERQCLMESQIVGKNSIFRALPNNVLANAYRISREEARRLKHNRRVESGVFTPSHAYRSFQDIMTASL |
||||||||||
| Function | Glutelin type-A 3 [UniProtKB/Swiss-Prot:Q09151] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0033440 | OsLima_01g0033440.02 | Chr01 | 33621689 | 33623282 | + | NAM | ||
| CDS seq | gtaaggtcccaagctgatacaaccgaggtttacgatatctctaataagttatttcaatgtaccggagtattagttgtccgtcgagttattgaacctagaggtcttctactacctcattactccaatggagcaactctagtgtatatcatccaagatgaacatcaacagatccatcgtttcagacagggagatgttgttgcattgcctgctggtgtagctcattggtgctacaatgatggtgatgtaccaattgttgccatatacgtcactgatatatacaacagtgctaaccagcttgatcctagaaaaaaggatttctttttagctggcaacaataagattggtcaacaattgtatagatccaaggcaagggagagttcgaagaacatctttgatggatttagtgttgaactgcttagtgaggctcttggcattagcagtggagtagcaaggcaactccaatgtcaaaatgaccaacgcggagaaattgttcttgtcgagcatgggcttgcatttctaaaaccatatgcatcagtgcaagagcaacaacaagaacaggtgcaaccaagtgagtatagacaaacacaatatcaacaaaaacaatttcaaggtggtcactctaatggtttggatgagaccttttgtaccatgaggaacgcgctcctttcacctttttggaacatcaatgctcatagcattgtctatattactcaaggtcgtgccgggttcaagttgtcaacaacaatggaaagacagtgtttgatggagagccaaatcgtgggaaagaattccatcttccgtgcacttcctaacaatgttttggcaaatgcatatcgtatctcaagagaagaagctaggagactcaagcacaacaggagagtggagtcaggcgtgttcactcctagtcatgcctacaggagcttccaagatatcatgactgcatcattatag
More
|
|||||||
| Protein seq | VRSQADTTEVYDISNKLFQCTGVLVVRRVIEPRGLLLPHYSNGATLVYIIQDEHQQIHRFRQGDVVALPAGVAHWCYNDGDVPIVAIYVTDIYNSANQLDPRKKDFFLAGNNKIGQQLYRSKARESSKNIFDGFSVELLSEALGISSGVARQLQCQNDQRGEIVLVEHGLAFLKPYASVQEQQQEQVQPSEYRQTQYQQKQFQGGHSNGLDETFCTMRNALLSPFWNINAHSIVYITQGRAGFKLSTTMERQCLMESQIVGKNSIFRALPNNVLANAYRISREEARRLKHNRRVESGVFTPSHAYRSFQDIMTASL
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0033440 | OsLima_01g0033440.01 | Chr01 | 33621689 | 33623282 | + | NAM | ||
| CDS seq | gtaaggtcccaagctgatacaaccgaggtttacgatatctctaataagttatttcaatgtaccggagtattagttgtccgtcgagttattgaacctagaggtcttctactacctcattactccaatggagcaactctagtgtatatcatccaagatgaacatcaacagatccatcgtttcagacagggagatgttgttgcattgcctgctggtgtagctcattggtgctacaatgatggtgatgtaccaattgttgccatatacgtcactgatatatacaacagtgctaaccagcttgatcctagaaaaaaggatttctttttagctggcaacaataagattggtcaacaattgtatagatccaaggcaagggagagttcgaagaacatctttgatggatttagtgttgaactgcttagtgaggctcttggcattagcagtggagtagcaaggcaactccaatgtcaaaatgaccaacgcggagaaattgttcttgtcgagcatgggcttgcatttctaaaaccatatgcatcagtgcaagagcaacaacaagaacaggtgcaaccaagtgagtatagacaaacacaatatcaacaaaaacaatttcaaggtggtcactctaatggtttggatgagaccttttgtaccatgaggaatatcgacaacccgaacctcgctaatacatacaacactagagcaggaaggatcacatatctaaatgtgcagaagtttccaattcttaatcttctacaaatgagtaccgtgaaagtaaatttgtaccagaacgcgctcctttcacctttttggaacatcaatgctcatagcattgtctatattactcaaggtcgtgccgggttcaagttgtcaacaacaatggaaagacagtgtttgatggagagccaaatcgtgggaaagaattccatcttccgtgcacttcctaacaatgttttggcaaatgcatatcgtatctcaagagaagaagctaggagactcaagcacaacaggagagtggagtcaggcgtgttcactcctagtcatgcctacaggagcttccaagatatcatgactgcatcattatag
More
|
|||||||
| Protein seq | VRSQADTTEVYDISNKLFQCTGVLVVRRVIEPRGLLLPHYSNGATLVYIIQDEHQQIHRFRQGDVVALPAGVAHWCYNDGDVPIVAIYVTDIYNSANQLDPRKKDFFLAGNNKIGQQLYRSKARESSKNIFDGFSVELLSEALGISSGVARQLQCQNDQRGEIVLVEHGLAFLKPYASVQEQQQEQVQPSEYRQTQYQQKQFQGGHSNGLDETFCTMRNIDNPNLANTYNTRAGRITYLNVQKFPILNLLQMSTVKVNLYQNALLSPFWNINAHSIVYITQGRAGFKLSTTMERQCLMESQIVGKNSIFRALPNNVLANAYRISREEARRLKHNRRVESGVFTPSHAYRSFQDIMTASL
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| SE | Chr01 | 33622651 | 33622873 | + | OsLima_01g0033440.01 | OsLima_01g0033440.02,OsLima_01g0033440.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0762500 | SBH | 0.544323 | 0.155102 | 84.247124 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g55630 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0762500 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0034540 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0034060 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0034490 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0033790 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0033540 | RBH | 0.0 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0533000 | RBH | 0 | 0 | 0.04467 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0033280 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0528100 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0033500 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0033750 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0033780 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0033620 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G034080 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0033740 | RBH | 0.0 | 0.0 | 0.0 |
