Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_01g0032580 | OGI:01013090 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr01:32884158-32885731 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | acatttgccaaaacaatgcctgcttggctctgcagaatgctcaaactgatgctgtcgtttgtatatggctgttcttagctctcaaaccaagatcttgaacccgatcaagagcaaagaaccgcaacaaaaattacatgagaaagaatatcaatcgatcatgagctagctagggaataattcacgatttcaccgggacaccgggtggcacggatcagccagccaactcaacacgaaagaagcaaaagaattcgacgagatcccctcgtttcccgcttgctcggctcgctcgccgcgcgcgcggcgccgcctcaccggcacaccttgcagaggcagacgagtaggatgacggcgaacgccaggcaggacagcccgatggccaccccgagcaccgccgcgctgggcccgccccgcgcgtcggcgccctcgtccgcgtccccgtcctttgcgccgtcgtcgtagtccgcgctccgctccgaccgcgccgtcgccggcggcgccatcaccgggaacccgtacttgtcgcacggcgccacgccgatggcgatctcggcggacagcaccgaccggttgtagcacagcttggggttcccggccgccctgaacactcgcagcctcgacacgaacttggcggtgaatggcaccatgccgtcgaagtcgttgccctcgaggttgagctccttcaggcccctcatctcggataggaactgaggtatgctgccattgagccggttcgagcccaggttgagcacctcgagctcgggcagcgtggagacagtgtccgggatgcggccggagatggagttgttggacaggtcaatggtggtgagcgaaatgagatcgccgatggaggtggggatgttcccgttgaggtcgttggagctgaggttgaggtgggtgatggcgctgaggagggtgagggtgtcggggatggcgccggtgatgcggttcccggagaggtcgaggtgggtgaggttggggcagtgcaagtggtgcgggaggaagccggagaggttggcattggagagggtgaggctggtgaggtggcccatgtgggagacgacgactgcgagctccgaaggggagccggtggcgaggggagtgtccgcgacggtgagctcggtcaggttctccaggtgcgagagccacacggcggagaggcggtggagcgaggcgacgcaggagaaggcccggagccctgccgcgagctgctccggcggaagcagccgcggcggcgccgcggggcagtcggagaaggagagcgcccggagggacggcgcgagcgcctcgagcgccccggccgagacggaggtggtcgccgagcagttggccatcacgagggacgtcacgcgccgaaacggcaccccggcgtcgcaggacgcggcgaccacgcccacggcgccggccgcgtcgtcgcaggggtcgagacggtgcgggcggaggccgagcgcccgcagcgccacgagctgctccgggtccagcggcgccgctccggcgaaggagatggcgacgagtagtagtagcagcagcagtaggtcgtgcgtggcgaggacggtggtggtggcggcggcggccat
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| CDS seq | atggccgccgccgccaccaccaccgtcctcgccacgcacgacctactgctgctgctactactactcgtcgccatctccttcgccggagcggcgccgctggacccggagcagctcgtggcgctgcgggcgctcggcctccgcccgcaccgtctcgacccctgcgacgacgcggccggcgccgtgggcgtggtcgccgcgtcctgcgacgccggggtgccgtttcggcgcgtgacgtccctcgtgatggccaactgctcggcgaccacctccgtctcggccggggcgctcgaggcgctcgcgccgtccctccgggcgctctccttctccgactgccccgcggcgccgccgcggctgcttccgccggagcagctcgcggcagggctccgggccttctcctgcgtcgcctcgctccaccgcctctccgccgtgtggctctcgcacctggagaacctgaccgagctcaccgtcgcggacactcccctcgccaccggctccccttcggagctcgcagtcgtcgtctcccacatgggccacctcaccagcctcaccctctccaatgccaacctctccggcttcctcccgcaccacttgcactgccccaacctcacccacctcgacctctccgggaaccgcatcaccggcgccatccccgacaccctcaccctcctcagcgccatcacccacctcaacctcagctccaacgacctcaacgggaacatccccacctccatcggcgatctcatttcgctcaccaccattgacctgtccaacaactccatctccggccgcatcccggacactgtctccacgctgcccgagctcgaggtgctcaacctgggctcgaaccggctcaatggcagcatacctcagttcctatccgagatgaggggcctgaaggagctcaacctcgagggcaacgacttcgacggcatggtgccattcaccgccaagttcgtgtcgaggctgcgagtgttcagggcggccgggaaccccaagctgtgctacaaccggtcggtgctgtccgccgagatcgccatcggcgtggcgccgtgcgacaagtacgggttcccggtgatggcgccgccggcgacggcgcggtcggagcggagcgcggactacgacgacggcgcaaaggacggggacgcggacgagggcgccgacgcgcggggcgggcccagcgcggcggtgctcggggtggccatcgggctgtcctgcctggcgttcgccgtcatcctactcgtctgcctctgcaaggtgtgccggtga
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| Protein seq | MAAAATTTVLATHDLLLLLLLLVAISFAGAAPLDPEQLVALRALGLRPHRLDPCDDAAGAVGVVAASCDAGVPFRRVTSLVMANCSATTSVSAGALEALAPSLRALSFSDCPAAPPRLLPPEQLAAGLRAFSCVASLHRLSAVWLSHLENLTELTVADTPLATGSPSELAVVVSHMGHLTSLTLSNANLSGFLPHHLHCPNLTHLDLSGNRITGAIPDTLTLLSAITHLNLSSNDLNGNIPTSIGDLISLTTIDLSNNSISGRIPDTVSTLPELEVLNLGSNRLNGSIPQFLSEMRGLKELNLEGNDFDGMVPFTAKFVSRLRVFRAAGNPKLCYNRSVLSAEIAIGVAPCDKYGFPVMAPPATARSERSADYDDGAKDGDADEGADARGGPSAAVLGVAIGLSCLAFAVILLVCLCKVCR |
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| Function | Receptor-like protein 51 [UniProtKB/Swiss-Prot:Q9SN38] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0032580 | OsLima_01g0032580.01 | Chr01 | 32884158 | 32885731 | - | NAM | ||
| CDS seq | atggccgccgccgccaccaccaccgtcctcgccacgcacgacctactgctgctgctactactactcgtcgccatctccttcgccggagcggcgccgctggacccggagcagctcgtggcgctgcgggcgctcggcctccgcccgcaccgtctcgacccctgcgacgacgcggccggcgccgtgggcgtggtcgccgcgtcctgcgacgccggggtgccgtttcggcgcgtgacgtccctcgtgatggccaactgctcggcgaccacctccgtctcggccggggcgctcgaggcgctcgcgccgtccctccgggcgctctccttctccgactgccccgcggcgccgccgcggctgcttccgccggagcagctcgcggcagggctccgggccttctcctgcgtcgcctcgctccaccgcctctccgccgtgtggctctcgcacctggagaacctgaccgagctcaccgtcgcggacactcccctcgccaccggctccccttcggagctcgcagtcgtcgtctcccacatgggccacctcaccagcctcaccctctccaatgccaacctctccggcttcctcccgcaccacttgcactgccccaacctcacccacctcgacctctccgggaaccgcatcaccggcgccatccccgacaccctcaccctcctcagcgccatcacccacctcaacctcagctccaacgacctcaacgggaacatccccacctccatcggcgatctcatttcgctcaccaccattgacctgtccaacaactccatctccggccgcatcccggacactgtctccacgctgcccgagctcgaggtgctcaacctgggctcgaaccggctcaatggcagcatacctcagttcctatccgagatgaggggcctgaaggagctcaacctcgagggcaacgacttcgacggcatggtgccattcaccgccaagttcgtgtcgaggctgcgagtgttcagggcggccgggaaccccaagctgtgctacaaccggtcggtgctgtccgccgagatcgccatcggcgtggcgccgtgcgacaagtacgggttcccggtgatggcgccgccggcgacggcgcggtcggagcggagcgcggactacgacgacggcgcaaaggacggggacgcggacgagggcgccgacgcgcggggcgggcccagcgcggcggtgctcggggtggccatcgggctgtcctgcctggcgttcgccgtcatcctactcgtctgcctctgcaaggtgtgccggtga
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| Protein seq | MAAAATTTVLATHDLLLLLLLLVAISFAGAAPLDPEQLVALRALGLRPHRLDPCDDAAGAVGVVAASCDAGVPFRRVTSLVMANCSATTSVSAGALEALAPSLRALSFSDCPAAPPRLLPPEQLAAGLRAFSCVASLHRLSAVWLSHLENLTELTVADTPLATGSPSELAVVVSHMGHLTSLTLSNANLSGFLPHHLHCPNLTHLDLSGNRITGAIPDTLTLLSAITHLNLSSNDLNGNIPTSIGDLISLTTIDLSNNSISGRIPDTVSTLPELEVLNLGSNRLNGSIPQFLSEMRGLKELNLEGNDFDGMVPFTAKFVSRLRVFRAAGNPKLCYNRSVLSAEIAIGVAPCDKYGFPVMAPPATARSERSADYDDGAKDGDADEGADARGGPSAAVLGVAIGLSCLAFAVILLVCLCKVCR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0750400 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g54630 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0750400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0033690 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0033210 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0033650 | RBH | 0.0 | 1.416432 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0032910 | RBH | 0.0 | 0.074296 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0032690 | RBH | 0.0 | 2.186576 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0521800 | RBH | 0.1359935 | 0.2420165 | 0.0987605 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0032400 | RBH | 0.0 | 0.097803 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0516600 | RBH | 0.111436 | 0.0456175 | 1.51995 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0023780 | SBH | 0.000000 | 0.365868 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0032640 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0032880 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0032980 | RBH | 0.0 | 0.225495 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0032770 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G033240 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0032850 | RBH | 0.0 | 0.000000 | 0.0 |
