Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_01g0032270 | OGI:01094330 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr01:32673843-32676966 | ||||||||
| Gene Symbol | OsCCD8a, OsCCD8c, CCD8a, CCD8c, D10, d10(d15, d16), d16, d15, dwf9, d10, OsCCD8b, OsCCD8, CCD8, OsD10 | ||||||||||
| DNA seq | ttacttgctgttcctgttcctgggcacccagcagcagtgcaagccgtagggcagcccgtacgggaacttggcccgcgcgacctcctcgaacgtcttgccgtccagcaccagcgcatagcccgacccgtccttggcactcaccatcgatatcgccacgcctgccatcaataacagagttggtcaagttattacaaacgaaacgaggcaaagccaagacgtacgtatacgcagccaacgaggagagatggtgacactaaccgtcgtcttcctcggtggcgccggggcgtggcacgaagaagggctcggacggcacggagccctcctcatgccagttcttggccgtcctctccaccaggtcgaccttggtgagcgtgttggggaagttgcacggccggcgggcgccgcaggcgtaggcgtaccggtactccctgccgacgtgcgccgggttgatgctgcacatgtccatgccccgcccgtgctcctccgggtccagcgccgtctccagctcgccgaactggctcccgtccagggggatcctgaaccgccccaccctacacatggtgttccccgtcatccatcgtgcatacgtgcatgcgtagcgtagcaaattgacggcgggacgtcgtcgtgtggctcgtgtgtgtacgtacctggcgtcggggaggacgtcctggccgctggaggagcggaggttgtggaggcggagcttgtcgaggatggcggtgttggcgttgtgctcgcagcagtcggcgatgatcgccgtcacgcgcccctcctcgtccgtctcctcgtacgcgttgatgaagtggaacgtcacgaacggcggcacctccacgctcgccaccttcggttggccatcgtcccgacaaatatcatcattagatcacccaaccaattaaataggcaaaacgggaacgcactacgggcggcagcgattgatgatggcttacaatcttgccgctggccttgcacatgacgtgcatgtagctgccggactcgaggtgccactcgaacttgtacagtggcgtgggctcggcgcggaggaggttcttggcgcagtagcggagcggcatctccggcacgacgacgtagtgctcggtgacggggaacgagtgcacccaccctggcgccggcccgccgcggcagtccaccctgccgacgaactgcctctcgttgctaccggcgtccatcctcgccaccacgtagccgggccggatcaggtcggggatcagcgtccagaactcggtgtcggtcacgatcgggtgcgccgagtggatcagcccgcccagcttgtccgtgtactggaacttgccgaccgtgtcgagcgtgtccgggtcgacctggatggagcccttgatggtctccgtgaggcagagcacgcggccgtcgccgagcatgacgacgccggtgttggagttgtcggtgagcgacgagcccgagaagagggtcgccagctggccgacgtaggacaggaagttgtccggcttgggcacctccgagaactcgcggtagcacaccttgccgtgcgcgcgcgccgccttgtacgcctccgactcgatctgccggtgcgcgcccacggcgcggccgccgcggaacgagacgcgcaccagcgtcgcgtagccgtcgaacaggtgccggaagccgtagtcgccgaggttccatagtcccgggccgttcctcaggtacgtgccatcctgcagcaagtatgcatcgatccgatcaatcatttgcagcacgtcgacaaatccgtccacctctaattaacgaccgacaaattaatctatccacgagcttacctcagaagattgcatttttaattagctgaaacgattgtattatccatagcttagtgagtgtaactacaaagttataacaatattatactacatgtacacctgtattaattcctcaaatcaagtcactatcaaaattggcaagaacagtgataagatcacttggagttaggggagaccaaggtttttgacttttgttttcagagagttgcggggtgcaacaaaactgcaaccacaagacagtgatgccattgttgtcgccgatcgaagcgaggggtgagcagagaatctgggtatatatgttgtgttccccgcaagcatcgtgagtgccaagatgccatctccttttcgctaggccagcatagggtaagttagtgtcgccctcctctttgtcgatcaaattactgaagatttgggtgagtgcttcagcaactgctggcacagtggaaattaaaaataacagtcggcaagtaatataccctggcgtgttagatactgctggtaaaaatatgctaggtacgtggccaaagctggtacctttttaggacccttctggggctatatgcatatatgtgctctaggtcagcggttagcctgcactaatcaaggagatgctacaagatgaaaatggttaggttaattaaaaaggatttgttgcacagtgatgtggtccagaaagtgcctttcgtatttctcaatgtgtgggaagatgttgtgcatgcttttttactaagatgttcaaaaggatctttagtttatagatgatctcaagaaagcaccgtattatatgtggatatggagtactgggaaacctttgaatcaaaataacagaaaagattcgcattcttgaatgaaaaatgcacggctaaccttagcttgaccaccggcagatcttataaagtgctgaggttatggtgtgttcatgaatacttaattagggtggagagaaggcaaaagccaaatcaagtcatatttagggagatttgcaatcagtaggaggcttaacccaccagccagagaggcagctctccgtccacctcgagcgcaccctcccacctctcctgccgtacactcttccacgccacgagctcgccgccgcctccgccgccgccacgtccgccacggcgccgcggggcgtcgacggggcgggccggcggcgcgacgaccggcgcgggcggcgctgcctccgtcacggcgctagccgcgagaggctgcgccacggcccgcttgccctggtgcccctggctggccaggcggcccggccggctcgcggcgcctgacagcgccgcggatacgcacagcgacgatgcctgcagcatagcgggagacat
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| CDS seq | atgtctcccgctatgctgcaggcatcgtcgctgtgcgtatccgcggcgctgtcaggcgccgcgagccggccgggccgcctggccagccaggggcaccagggcaagcgggccgtggcgcagcctctcgcggctagcgccgtgacggaggcagcgccgcccgcgccggtcgtcgcgccgccggcccgccccgtcgacgccccgcggcgccgtggcggacgtggcggcggcggaggcggcggcgagctcgtggcgtggaagagtgtacggcaggagaggtgggagggtgcgctcgaggtggacggagagctgcctctctggctggatggcacgtacctgaggaacggcccgggactatggaacctcggcgactacggcttccggcacctgttcgacggctacgcgacgctggtgcgcgtctcgttccgcggcggccgcgccgtgggcgcgcaccggcagatcgagtcggaggcgtacaaggcggcgcgcgcgcacggcaaggtgtgctaccgcgagttctcggaggtgcccaagccggacaacttcctgtcctacgtcggccagctggcgaccctcttctcgggctcgtcgctcaccgacaactccaacaccggcgtcgtcatgctcggcgacggccgcgtgctctgcctcacggagaccatcaagggctccatccaggtcgacccggacacgctcgacacggtcggcaagttccagtacacggacaagctgggcgggctgatccactcggcgcacccgatcgtgaccgacaccgagttctggacgctgatccccgacctgatccggcccggctacgtggtggcgaggatggacgccggtagcaacgagaggcagttcgtcggcagggtggactgccgcggcgggccggcgccagggtgggtgcactcgttccccgtcaccgagcactacgtcgtcgtgccggagatgccgctccgctactgcgccaagaacctcctccgcgccgagcccacgccactgtacaagttcgagtggcacctcgagtccggcagctacatgcacgtcatgtgcaaggccagcggcaagattgtggcgagcgtggaggtgccgccgttcgtgacgttccacttcatcaacgcgtacgaggagacggacgaggaggggcgcgtgacggcgatcatcgccgactgctgcgagcacaacgccaacaccgccatcctcgacaagctccgcctccacaacctccgctcctccagcggccaggacgtcctccccgacgccaggtacgtacacacacgagccacacgacgacgtcccgccgtcaatttgctacgctacgcatgcacgtatgcacgatggatgacggggaacaccatgtgtagggtggggcggttcaggatccccctggacgggagccagttcggcgagctggagacggcgctggacccggaggagcacgggcggggcatggacatgtgcagcatcaacccggcgcacgtcggcagggagtaccggtacgcctacgcctgcggcgcccgccggccgtgcaacttccccaacacgctcaccaaggtcgacctggtggagaggacggccaagaactggcatgaggagggctccgtgccgtccgagcccttcttcgtgccacgccccggcgccaccgaggaagacgacggcgtggcgatatcgatggtgagtgccaaggacgggtcgggctatgcgctggtgctggacggcaagacgttcgaggaggtcgcgcgggccaagttcccgtacgggctgccctacggcttgcactgctgctgggtgcccaggaacaggaacagcaagtaa
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| Protein seq | MSPAMLQASSLCVSAALSGAASRPGRLASQGHQGKRAVAQPLAASAVTEAAPPAPVVAPPARPVDAPRRRGGRGGGGGGGELVAWKSVRQERWEGALEVDGELPLWLDGTYLRNGPGLWNLGDYGFRHLFDGYATLVRVSFRGGRAVGAHRQIESEAYKAARAHGKVCYREFSEVPKPDNFLSYVGQLATLFSGSSLTDNSNTGVVMLGDGRVLCLTETIKGSIQVDPDTLDTVGKFQYTDKLGGLIHSAHPIVTDTEFWTLIPDLIRPGYVVARMDAGSNERQFVGRVDCRGGPAPGWVHSFPVTEHYVVVPEMPLRYCAKNLLRAEPTPLYKFEWHLESGSYMHVMCKASGKIVASVEVPPFVTFHFINAYEETDEEGRVTAIIADCCEHNANTAILDKLRLHNLRSSSGQDVLPDARYVHTRATRRRPAVNLLRYACTYARWMTGNTMCRVGRFRIPLDGSQFGELETALDPEEHGRGMDMCSINPAHVGREYRYAYACGARRPCNFPNTLTKVDLVERTAKNWHEEGSVPSEPFFVPRPGATEEDDGVAISMVSAKDGSGYALVLDGKTFEEVARAKFPYGLPYGLHCCWVPRNRNSK |
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| Function | Carotenoid cleavage dioxygenase 8 homolog B, chloroplastic [UniProtKB/Swiss-Prot:Q8LIY8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0032270 | OsLima_01g0032270.01 | Chr01 | 32673843 | 32676966 | - | NAM | ||
| CDS seq | atgtctcccgctatgctgcaggcatcgtcgctgtgcgtatccgcggcgctgtcaggcgccgcgagccggccgggccgcctggccagccaggggcaccagggcaagcgggccgtggcgcagcctctcgcggctagcgccgtgacggaggcagcgccgcccgcgccggtcgtcgcgccgccggcccgccccgtcgacgccccgcggcgccgtggcggacgtggcggcggcggaggcggcggcgagctcgtggcgtggaagagtgtacggcaggagaggtgggagggtgcgctcgaggtggacggagagctgcctctctggctggatggcacgtacctgaggaacggcccgggactatggaacctcggcgactacggcttccggcacctgttcgacggctacgcgacgctggtgcgcgtctcgttccgcggcggccgcgccgtgggcgcgcaccggcagatcgagtcggaggcgtacaaggcggcgcgcgcgcacggcaaggtgtgctaccgcgagttctcggaggtgcccaagccggacaacttcctgtcctacgtcggccagctggcgaccctcttctcgggctcgtcgctcaccgacaactccaacaccggcgtcgtcatgctcggcgacggccgcgtgctctgcctcacggagaccatcaagggctccatccaggtcgacccggacacgctcgacacggtcggcaagttccagtacacggacaagctgggcgggctgatccactcggcgcacccgatcgtgaccgacaccgagttctggacgctgatccccgacctgatccggcccggctacgtggtggcgaggatggacgccggtagcaacgagaggcagttcgtcggcagggtggactgccgcggcgggccggcgccagggtgggtgcactcgttccccgtcaccgagcactacgtcgtcgtgccggagatgccgctccgctactgcgccaagaacctcctccgcgccgagcccacgccactgtacaagttcgagtggcacctcgagtccggcagctacatgcacgtcatgtgcaaggccagcggcaagattgtggcgagcgtggaggtgccgccgttcgtgacgttccacttcatcaacgcgtacgaggagacggacgaggaggggcgcgtgacggcgatcatcgccgactgctgcgagcacaacgccaacaccgccatcctcgacaagctccgcctccacaacctccgctcctccagcggccaggacgtcctccccgacgccaggtacgtacacacacgagccacacgacgacgtcccgccgtcaatttgctacgctacgcatgcacgtatgcacgatggatgacggggaacaccatgtgtagggtggggcggttcaggatccccctggacgggagccagttcggcgagctggagacggcgctggacccggaggagcacgggcggggcatggacatgtgcagcatcaacccggcgcacgtcggcagggagtaccggtacgcctacgcctgcggcgcccgccggccgtgcaacttccccaacacgctcaccaaggtcgacctggtggagaggacggccaagaactggcatgaggagggctccgtgccgtccgagcccttcttcgtgccacgccccggcgccaccgaggaagacgacggcgtggcgatatcgatggtgagtgccaaggacgggtcgggctatgcgctggtgctggacggcaagacgttcgaggaggtcgcgcgggccaagttcccgtacgggctgccctacggcttgcactgctgctgggtgcccaggaacaggaacagcaagtaa
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| Protein seq | MSPAMLQASSLCVSAALSGAASRPGRLASQGHQGKRAVAQPLAASAVTEAAPPAPVVAPPARPVDAPRRRGGRGGGGGGGELVAWKSVRQERWEGALEVDGELPLWLDGTYLRNGPGLWNLGDYGFRHLFDGYATLVRVSFRGGRAVGAHRQIESEAYKAARAHGKVCYREFSEVPKPDNFLSYVGQLATLFSGSSLTDNSNTGVVMLGDGRVLCLTETIKGSIQVDPDTLDTVGKFQYTDKLGGLIHSAHPIVTDTEFWTLIPDLIRPGYVVARMDAGSNERQFVGRVDCRGGPAPGWVHSFPVTEHYVVVPEMPLRYCAKNLLRAEPTPLYKFEWHLESGSYMHVMCKASGKIVASVEVPPFVTFHFINAYEETDEEGRVTAIIADCCEHNANTAILDKLRLHNLRSSSGQDVLPDARYVHTRATRRRPAVNLLRYACTYARWMTGNTMCRVGRFRIPLDGSQFGELETALDPEEHGRGMDMCSINPAHVGREYRYAYACGARRPCNFPNTLTKVDLVERTAKNWHEEGSVPSEPFFVPRPGATEEDDGVAISMVSAKDGSGYALVLDGKTFEEVARAKFPYGLPYGLHCCWVPRNRNSK
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0746400 | RBH | 0.000000 | 0.292837 | 0.861993 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g54270 | RBH | 0.000000 | 0.139982 | 0.156860 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0746400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0033400 | RBH | 0.105017 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0032910 | RBH | 0.0 | 0.0 | 0.138014 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0033350 | RBH | 0.0 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0032610 | RBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0032380 | RBH | 0.0 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0518400 | RBH | 0.0766935 | 0.076523 | 0.806753 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0032090 | RBH | 0.0 | 0.0 | 0.439243 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0512900 | RBH | 0.107959 | 0 | 1.024726 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0032340 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0032570 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0032660 | RBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0032460 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G032920 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0032550 | RBH | 0.0 | 0.0 | 0.0 |
