Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_01g0030260 | OGI:01089520 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr01:31069564-31070985 | ||||||||
| Gene Symbol | WRKY26, OsWRKY26, OsWRKY59, DLN19, OsDLN19 | ||||||||||
| DNA seq | ttaattaaggtctgggtgactgatcccggcgacgaaaaagcggccggaggcggcgtcctgcgcggcgtagtagacggtgccggggcacacgtggttgtggatcccctcgtacgtcgtcaccacgtaccgcgggtcgttcttgtctctctccaccctcttcttcacgttgcacccctccgtcgagcaccggtaatagttcctgaaatcgattcaagtcaccatgaaattaaattagtactacacatattatgcatatgcctagactgaactgaattgattccgtaggctaagctgttgatgattggtaattatagtatggttattattgttagctaggcagtgcggtgccgtgtttagttgttttggcaaaaaaataaaaataaattaacgtatacaaacacacatttgaaatattaaatatagactaataacaaaacaaattacagattatgcctgtaaactgcgagacgaatctattaatataagcttaattaatccatcattaagcaccgtattgtcaaatcatgacgtaattaggctcaaaatattcatctagcaatttacatacaaactatgcaattgatttttttcgtccacatataatgcatcatgtatgtgtccaaacatttaatgtgatagaaaagttgaaagtttgaagggaactaaacatagccgtagtaacattttgtacctcggattagggctgttcttaacggactttttcccgtacttcctccacttatacccgtcgtcaagtatctcgtcgtccgacctagtccggaacgcgatcttgtccgtcatcgtccgatctcttccctcgccggccacggccgccgccgccgcagccacgctcctgaaatgtcgttgttttttttgttaatggaatgaaacatttcgacctttacctattagagttacagtcaattattacgagtatagttcaaaatgaaatgtcgttgttaagttccccaatccgatcgatcaaaaaatccgcactcccatcgagcaaaaattaattttacacgcgcccatacagcaaatggtacatgtacgcgtgtggcgtggctaagaagcgcacctcggatagccgccgccggcggcggcaacagcatccggcacgaccggttcagcggggcccatcgccggcgccggcgtcacgtacgacgcgctgggcacagccgctggtggtggtggcgccggaacgccctgatcgtcggacaggtagtcgaggaggtcgagatgctgctgcctaaacgcggcgccgaaggaggagccggaggcgccgccaccgtgcggcgccgcggaggggcggcgcgccatccagctgccgctgaagacggcgtcgtcgtactcggcgtgcgagccgtggcggcaaaaactgaagggtgtgcttgctcccgcagccgccgccgccatgtacat
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| CDS seq | atgtacatggcggcggcggctgcgggagcaagcacacccttcagtttttgccgccacggctcgcacgccgagtacgacgacgccgtcttcagcggcagctggatggcgcgccgcccctccgcggcgccgcacggtggcggcgcctccggctcctccttcggcgccgcgtttaggcagcagcatctcgacctcctcgactacctgtccgacgatcagggcgttccggcgccaccaccaccagcggctgtgcccagcgcgtcgtacgtgacgccggcgccggcgatgggccccgctgaaccggtcgtgccggatgctgttgccgccgccggcggcggctatccgaggaactattaccggtgctcgacggaggggtgcaacgtgaagaagagggtggagagagacaagaacgacccgcggtacgtggtgacgacgtacgaggggatccacaaccacgtgtgccccggcaccgtctactacgccgcgcaggacgccgcctccggccgctttttcgtcgccgggatcagtcacccagaccttaattaa
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| Protein seq | MYMAAAAAGASTPFSFCRHGSHAEYDDAVFSGSWMARRPSAAPHGGGASGSSFGAAFRQQHLDLLDYLSDDQGVPAPPPPAAVPSASYVTPAPAMGPAEPVVPDAVAAAGGGYPRNYYRCSTEGCNVKKRVERDKNDPRYVVTTYEGIHNHVCPGTVYYAAQDAASGRFFVAGISHPDLN |
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| Function | Probable WRKY transcription factor 51 [UniProtKB/Swiss-Prot:Q93WU9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0030260 | OsLima_01g0030260.01 | Chr01 | 31069564 | 31070985 | - | NAM | ||
| CDS seq | atgtacatggcggcggcggctgcgggagcaagcacacccttcagtttttgccgccacggctcgcacgccgagtacgacgacgccgtcttcagcggcagctggatggcgcgccgcccctccgcggcgccgcacggtggcggcgcctccggctcctccttcggcgccgcgtttaggcagcagcatctcgacctcctcgactacctgtccgacgatcagggcgttccggcgccaccaccaccagcggctgtgcccagcgcgtcgtacgtgacgccggcgccggcgatgggccccgctgaaccggtcgtgccggatgctgttgccgccgccggcggcggctatccgaggaactattaccggtgctcgacggaggggtgcaacgtgaagaagagggtggagagagacaagaacgacccgcggtacgtggtgacgacgtacgaggggatccacaaccacgtgtgccccggcaccgtctactacgccgcgcaggacgccgcctccggccgctttttcgtcgccgggatcagtcacccagaccttaattaa
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| Protein seq | MYMAAAAAGASTPFSFCRHGSHAEYDDAVFSGSWMARRPSAAPHGGGASGSSFGAAFRQQHLDLLDYLSDDQGVPAPPPPAAVPSASYVTPAPAMGPAEPVVPDAVAAAGGGYPRNYYRCSTEGCNVKKRVERDKNDPRYVVTTYEGIHNHVCPGTVYYAAQDAASGRFFVAGISHPDLN |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0714800 | RBH | 0.000000 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g51690 | RBH | 0.000000 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0714800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0031390 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0030970 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0031410 | RBH | 0.0 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0030630 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0030300 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0491400 | RBH | 0.0296005 | 1.222429 | 0.675088 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0030030 | RBH | 0.000000 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0483300 | RBH | 0.177545 | 5.889323 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0024720 | RBH | 0.051992 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0030210 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0030500 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0030680 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0030430 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G030900 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0030570 | RBH | 0.0 | 0.0 | 0.0 |
