Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_01g0026030 | OGI:01080100 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr01:27544342-27546890 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgcgttacctctacttccacggcaacgcaagccaggctcggcctatccgccaccacctcctcgcctacctcgacgcctgcgcctcgcgggcccacctggcggagctccacggccggctcgtccgggcccacctcacctccgacagcttcgtcgccggccggctcatcgccctcctcgcgtcccccgcggcgaggcatgacatgcggtacgcgcgcaaggtgttcgacggaatggcccaaccgaacgcgttcgtgtggaactgcatgattagagggtacagcagctgcgaagccccccgggatgcattggcggtgttcagggaaatgcgtcggaggggagtctctcctgataattacactatggcagcggtcgtgtcggcgagtgctgcctttgctggcttgaagtggcggtcaaatggggacgcaattcatgcgctggttcggaggattgggtttacatcggatgtgttcgtcatgtcaggtcttgttaattattatggtgcctttagaagtgttaaggaagcaagcaaggttttcgaggaaatgtatgagagggacgtggtgtcttggacgtcaatgatatcagcttgtgcacagtgtggtcactgggacaaagtgctaaagatgctttctgagatgcaagcagaaggaattattcctaacaaggtcacgattataagcctgctttctgcttgtggccaaacacaggctgttgatgaaggccggtgggtgtacaatcaggttggtaaatttggtatcgaggcagatgtggatatcaggaatgctctcataagcatgtacacgaaatgtggatgcttgtctgatgctttagaagcatttcaagccatgcctgcaagatatactaaatcatggaatacgttgatcgatggctttgtgcaaaatcatgagcacaaagaagcgctaagaatatttgaagagatgctgttgcatggcgtaactccagatggtataacgcttgtaagtgtcttatcagcatgtgctcaacttggtgagttgcggaaaggcatgcatgttcacagttatatcaaagataatgggatctgttgtgacaatatccttacaaattctttgatcaacatgtatgccaaatgtggtgatatggctgcagctgaaagggtttttcaaactatgacaaaaaaggatgttgtttcctggacagttatggtttgtggttatgtgaagggacatcaatttacaatggccttcaacctatttgaagaaatgaagattgcagaagtcgtggcacatgaaatggcactggttagtctactttctgcttgttcacagctgggagcacttgataaaggaagagagatacactcttatatagaagagatgaatgtagccaaagatttgtgcctagaaagtgccctggtggatatgtatgcaaaatgtggctgcattgacactgcttctgaaatatttagaaaaatgcagcataagcaaaccctctcatggaatgccatgattggaggtcttgcaagcaatggttatggaaaagaagcagtggagctctttgatcaaatgctggagttacaggatccaaaaccggacggcattactcttaaggcagttcttggtgcctgtgcacatgtaggaatggttgatgaaggtctccgttacttctatttgatgtcaagccttggtgttgtccctgatactgagcactatggttgcatagtagacctcctggggagagctggtatgttagacgaggcatttcactttatcaagaagatgccaatagaacccaatcctgtaatttggggatcacttcttgctgcttgtagagttcatcacagaatggatctaggaaaggtaattggacagcatatcgttaacgtagctcctaatgatgtgggagtgcatgtgctcgtttcaaacttacatgctgaagaaagtcaatgggatgatgtcgaacatgttagaggactaatgggaagcagaggtatagagaagacacctggacacagttctgtccaggtataaaccttcagagttcagactatgtaaacttcacttgaatacatgatctaccattgagtaaaatatagaaagtttgcaggagcaaatgtaagtatgtaactattctgtttcagttttcttcaaaaaaaaataaataaagaagtaaactattcagtttcagttttacaagatgtcaggcatggcatgaccaaacttcactatctacaggacatgatttctgtctcaatatcaaatgtctaaagcaggatctaaaagttctcaggttaacttctgctgttgagcatagtctatagcatggcctacagaatgtttggttgcattactgaactgtgctttacaaaccctgtgtgatactatctgttctggcgtcaaaggtcataccaacattttagttgcccactgaaggcttatgaaattgtgctaactggtactcatcagtctttatacttcatatgtttgcgaactcatctattgtcttttcctagctaccatttctaactgaatggctaactggtagattacttgcagggccacggctgtag
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| CDS seq | atgcgttacctctacttccacggcaacgcaagccaggctcggcctatccgccaccacctcctcgcctacctcgacgcctgcgcctcgcgggcccacctggcggagctccacggccggctcgtccgggcccacctcacctccgacagcttcgtcgccggccggctcatcgccctcctcgcgtcccccgcggcgaggcatgacatgcggtacgcgcgcaaggtgttcgacggaatggcccaaccgaacgcgttcgtgtggaactgcatgattagagggtacagcagctgcgaagccccccgggatgcattggcggtgttcagggaaatgcgtcggaggggagtctctcctgataattacactatggcagcggtcgtgtcggcgagtgctgcctttgctggcttgaagtggcggtcaaatggggacgcaattcatgcgctggttcggaggattgggtttacatcggatgtgttcgtcatgtcaggtcttgttaattattatggtgcctttagaagtgttaaggaagcaagcaaggttttcgaggaaatgtatgagagggacgtggtgtcttggacgtcaatgatatcagcttgtgcacagtgtggtcactgggacaaagtgctaaagatgctttctgagatgcaagcagaaggaattattcctaacaaggtcacgattataagcctgctttctgcttgtggccaaacacaggctgttgatgaaggccggtgggtgtacaatcagggacatcaatttacaatggccttcaacctatttgaagaaatgaagattgcagaagtcgtggcacatgaaatggcactgcataagcaaaccctctcatggaatgccatgattggaggtcttgcaagcaatggttatggaaaagaagcagtggagctctttgatcaaatgctggagttacaggatccaaaaccggacggcattactcttaaggcagttcttggtgcctgtgcacatgtaggaatggttgatgaaggtctccgttacttctatttgatgtcaagccttggtgttgtccctgatactgagcactatggttgcatagtagacctcctggggagagctgggccacggctgtag
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| Protein seq | MRYLYFHGNASQARPIRHHLLAYLDACASRAHLAELHGRLVRAHLTSDSFVAGRLIALLASPAARHDMRYARKVFDGMAQPNAFVWNCMIRGYSSCEAPRDALAVFREMRRRGVSPDNYTMAAVVSASAAFAGLKWRSNGDAIHALVRRIGFTSDVFVMSGLVNYYGAFRSVKEASKVFEEMYERDVVSWTSMISACAQCGHWDKVLKMLSEMQAEGIIPNKVTIISLLSACGQTQAVDEGRWVYNQGHQFTMAFNLFEEMKIAEVVAHEMALHKQTLSWNAMIGGLASNGYGKEAVELFDQMLELQDPKPDGITLKAVLGACAHVGMVDEGLRYFYLMSSLGVVPDTEHYGCIVDLLGRAGPRL |
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| Function | Pentatricopeptide repeat-containing protein At2g36730 [UniProtKB/Swiss-Prot:Q9ZQA1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0026030 | OsLima_01g0026030.01 | Chr01 | 27544342 | 27546890 | + | NAM | ||
| CDS seq | atgcgttacctctacttccacggcaacgcaagccaggctcggcctatccgccaccacctcctcgcctacctcgacgcctgcgcctcgcgggcccacctggcggagctccacggccggctcgtccgggcccacctcacctccgacagcttcgtcgccggccggctcatcgccctcctcgcgtcccccgcggcgaggcatgacatgcggtacgcgcgcaaggtgttcgacggaatggcccaaccgaacgcgttcgtgtggaactgcatgattagagggtacagcagctgcgaagccccccgggatgcattggcggtgttcagggaaatgcgtcggaggggagtctctcctgataattacactatggcagcggtcgtgtcggcgagtgctgcctttgctggcttgaagtggcggtcaaatggggacgcaattcatgcgctggttcggaggattgggtttacatcggatgtgttcgtcatgtcaggtcttgttaattattatggtgcctttagaagtgttaaggaagcaagcaaggttttcgaggaaatgtatgagagggacgtggtgtcttggacgtcaatgatatcagcttgtgcacagtgtggtcactgggacaaagtgctaaagatgctttctgagatgcaagcagaaggaattattcctaacaaggtcacgattataagcctgctttctgcttgtggccaaacacaggctgttgatgaaggccggtgggtgtacaatcagggacatcaatttacaatggccttcaacctatttgaagaaatgaagattgcagaagtcgtggcacatgaaatggcactgcataagcaaaccctctcatggaatgccatgattggaggtcttgcaagcaatggttatggaaaagaagcagtggagctctttgatcaaatgctggagttacaggatccaaaaccggacggcattactcttaaggcagttcttggtgcctgtgcacatgtaggaatggttgatgaaggtctccgttacttctatttgatgtcaagccttggtgttgtccctgatactgagcactatggttgcatagtagacctcctggggagagctgggccacggctgtag
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| Protein seq | MRYLYFHGNASQARPIRHHLLAYLDACASRAHLAELHGRLVRAHLTSDSFVAGRLIALLASPAARHDMRYARKVFDGMAQPNAFVWNCMIRGYSSCEAPRDALAVFREMRRRGVSPDNYTMAAVVSASAAFAGLKWRSNGDAIHALVRRIGFTSDVFVMSGLVNYYGAFRSVKEASKVFEEMYERDVVSWTSMISACAQCGHWDKVLKMLSEMQAEGIIPNKVTIISLLSACGQTQAVDEGRWVYNQGHQFTMAFNLFEEMKIAEVVAHEMALHKQTLSWNAMIGGLASNGYGKEAVELFDQMLELQDPKPDGITLKAVLGACAHVGMVDEGLRYFYLMSSLGVVPDTEHYGCIVDLLGRAGPRL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.108512 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0646000 | RBH | 1.946995 | 2.188919 | 0.407965 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g45840 | RBH | 0.754424 | 0.954167 | 0.117197 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0646000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0027150 | RBH | 0.659920 | 0.0 | 0.270567 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0026660 | RBH | 0.0 | 0.0 | 0.870736 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0027090 | RBH | 1.072663 | 0.0 | 1.175495 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0026350 | RBH | 0.238035 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0026100 | RBH | 7.280012 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0437600 | RBH | 1.843159 | 1.8902765 | 0.7286625 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0025760 | RBH | 0.508289 | 0.084852 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0426600 | RBH | 2.1128665 | 1.433801 | 2.8769785 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0027490 | RBH | 0.266621 | 0.019355 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0025950 | RBH | 0.154846 | 1.229162 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0026280 | RBH | 0.000000 | 5.750690 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0026320 | RBH | 1.743612 | 0.149156 | 0.030039 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0026150 | RBH | 0.432936 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G026510 | RBH | 0.271769 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0026280 | RBH | 1.004096 | 0.000000 | 0.0 |
