Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_01g0025690 | OGI:01073910 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr01:27229965-27242351 | ||||||||
| Gene Symbol | BETACA1, OsCA, CA, OsbetaCA1, betaCA1, OsCA1 | ||||||||||
| DNA seq | actgcgtccttcgacatctgcgcgaaggttgggctcggaatttcgacaggatactcacagcgaaatcaatactctgcaatggcaaatggtacgcactcgtttcgattgttctgccttcttctgttttattttttttcccgtatgtagctgtagctgctgataaacgtgccatgtattccatctcgttcttgcaagcagtttcttagatgagttaaaatatgtattccatgtcaactgttcactttagttaggtagaactttcttacattatgattaattatctacttactccctctgtccgataataattatcgcattgattttttttataatgtttgatcattcgtcttattaaaaaaaattatatagaattattttttttattttgtttgtgacttgctttattatcaaaaaaaataatttaaatatgacatatctttttttatatttacactattttttcaaaaaagatgaatggtcaaacgttacacgaaaaaatcaaagcgaccactattttgggatggaagtagtacctgtagaaaaaaattaaatattagttcttaagtgagtgtggaccgaaaaaattccttatttatcatgaacacgttttccaaacttttaaaagatatgtttttttaaatatataaatgaacatgttctttcaaaaatcaaataaatcactttttcaagtttgtactgattaatactagactaatcatttgctaattgtttatattgttttactttccatcataactcatgccaaaatgcttttccaaacccaccattagccgctgtggcaagctcagttgctagcttgaggaggactatacaaagttgcacacacgccatggtactaacgagaactggaaaatatgttgactggaaaaattgtatcagttcatattagaaaaaaattactgtcagaatgaggaaaaactcagtccatgccactaaaggcatcagatgcgaattggcgctcctttctcctttcaaggagtaggcataaacataggctctgcagtagtttcatctgaaattttaagaccagctgaggtcttccaagaacccatgttcttggaaatcacatgttcaagctttaaaatgcattgataaaaggcggatatcatggtagcgaccattttaaaatgcattgataaaaggtggaaagaaaaaaaaaacatctccaagtgtaccttggattgtgagaacgataaatattctaacaaaaaatttgaatgctagaacgacaagtaaactgaaacaaagggagtattagtgaagattcaaagcagtagtaagtaactaatttgaatgttcataatgatgatattgtaacataaacaatgatagaatataaggtttaaggttaagtcttcataacacactataccatttatatttcatttccggagtccaaacattaccgaatcggaataaaatggtccttacaaaacggggacaacctatacggtcaaaaatctcaatatggttttcattcatgttttaggttgtgttcttttggcagttgagaacattttcctagcacgcaaaacgaagcaatggacaaacgtatgattaattaagtattagctaaaaaacttaaaaaaatatatcaatataattttcttaaacaactatcttatataattattttttaaaaaaacacattgtttaactgttcagaaaacatgcgcacgaataatgaatatagaacttgggaagagggagtatagaacacacctctgctaccgtacgtaaaagtggcgtagtggtagaggcactactacagaaagtgtttttcagtaaagggggttattagtttacatgcgggcggcttaaaccttataaatttctgtacgagggggtcatactagggtgaccaaaatctatctattaacttataaaagtaatagaaaaaggaggctccaagttcgctcttatgacttagaaattctcacattaattagagaaaaataaaaaaagagtccatattaaaatacattttataaataattaaaatttagaactaaaaaaataagaaatatggaagagaagactagagtccatgtagatatacaatttagaactaattaaaatttagaattaaaaataagagattaaaactagagtttagagtctatatacaaatatcatttgtaaatatctaaaattcgaaattaaaaataaataatattataagaagagtctagagttcatgtatataaaaaaaattaaaatggctaaaatttgaaacaaaaaagaaaatattaaaagatgggtttagagtccttaaagaaatatattttacaaatgaaataaaaaaagagtccatattaaaatacattttataaataattaaaatttagaacaaaaaaaagaaatatggaagagaagactagagtcgatgtagatatacaatttagaactaattaaaatttagaattaaaaataagagattaaaactagagtttagagtctatatacaaatataatttataaatatctaaaattcgaaattaaaaataaataatattgtaagaagagtctagagttcatatatataaaaaattaaaatagctaaaattcgaaacaaaaaaagaaaatattaaaagatgggtttagagtccttaaagaaatatattttacaaatgattaaaattcgaaatgaaaaataaggaatattgaaagaaaagactagagtctaggtatgcaatttagaactaattaaaattctgagataataaaatagaaataaaagtagagtttagaatccataaaaaatacaattttttaaatactaaaactcaaaatttaaaagtaattaatattggaaaaagagtttagagtccatacagtaatataatttatgaatagctgaaattcaaaatttaaaaagtaaaaatattgaaaaaggggtttagagtccatatgtcagtgttacggtccaccttaggatttaggaacataaactgacacatcacaggtggccatcttaagctaatgggccagccgcccagctcgtttctatctgcaacataaggcagaaaaccaaggccttgacatttcttttaggacacacgggctggaacggccccggcccaattaattaaatcctgctattgaaaaagggttctgtaattagagttcctactactatacatacttccgcaaggtaatctagcacccaaatcaaactacagccaacgtgtatcatcagtagattccaccccaagatcgtgtgcccgctccgatcggcagaacctaatcacgaccaatccgtcgccaacacagccacaaacccacaattacgcggcggtgcattctcgttgctttgacggcttcgctaaacgaaagatatttaccgtggctaagctaggctaagcaagccctgatcacacgttccacacctcgcagcgccaccacatccgagccgatcgaccggcccaacccccccgtgagacagactccagaggccgcgagcggtggcatcgtcatcgcaatatcaaatccacatccacatcgccatcgagcgatccacccacaacctgcaacggcgcgacccaaccgcaaagccgctcgcattgaaacccgcgtaggttgccttcgttttccgccccgcggcggcccatcatccgcgcgcgtgtggaccaggacgcgcgggcggggaaccgttggccacggcgccgcggcgcgttatcgcgagcctatccgcgcgcgtgtggcgcgctgggtgggtgaggcgccgagtggcccggatccacccgcccagccgggccgcacgccccccctcgccccagccacccggcgccgcgaacgacccatcaccagtcacgtacgcaccgctcggcgctcgctagctgccaccctctccctcccgctgtccgggggcgctggttgtcggcacgcgggggcgcgggcgtctatttgttgcgcgcgcgggcgcggcggcgagacgcgtgtgtagctactgctataaggagcgcgccgtgcaccgcctctcacaatgtcgaccgccgccgccgccgccgctgcccagagctggtgcttcgccactgtcaccccgcgctcccgcgccacagtcgtcgccagcctcgcctccccatcaccgtcctcctcctcctcctcctcctccaacagcagcaacctcccggcccccttccgcccccgcctcatccgcaacacccccgtcttcgccgcccccgtcgcccccgccgcggtacgtgcattatgcatggtcacgccacccctgcagctagctgcatgcatatatacacgccgcccggcacccttccatatctcaagcttttttgacacgttcggtctcatgctaatttagctataacaaggctgcatatacatacacgatacgtgcatgcacgcgcctcgtgctgcattaggcccgacacatgcatgggtcgtacgtagcttgcattcctgccgctctctctagctctacgtacacacaacatgtcatttggtttcatccatacctgcaaactgtgcaagaatggctacatgcatgcatgcactgcagtgttatatctaagactaatagtctaatactgtgtgtctaattgtccatacctcgaaacatagttgtttatgcgtcaatcccacgtaccatcatcacacacaccccgcaactcggcaaattgtccaactaagcactgttccgtgaccaccgactctcttagttttttaagcaatcattgaacagtgtacagcaaaagaaaatgtatgttcaatttttaatcaacactctgacaacatataggagtatatattgcatattgcccttcttatgcatttttcccaatttgttttctgtcaatcaacgtgcacgtcaacaaactctaaatagaatattcgggaggagaaaaggttcccaaacagttggccaattatattgttcattagagataagaaagcgctttggatataaaagatacccccaaaagtcttgagtggaatgaacaaagctccaagtacattaagaaatcaaacatctaggcggcttttccctcaaacgataaggtaaagttctagcagggacagatagtgttcgttttctactttgtttctttttcgcttgaggagaagcgtccatgatttagctttagtaatggactgtcgagtcactatcaacttcgttattttaacaattatatattttccattttattttgaaaaatgatacggagtattgtctttagtttctcaagccatataaagatcatagtatctagtatatacagaaatgctagaaaggtcaagtttgctgtttttctaggcaattttttatttctccaaacattaaaaagggaatttcactgtaaatggttgaactcaaaatatttttttatattaattttatttcgtacgtggtgatctgacttgttggggtaaccagtacaagccctgatttttgttgcagtcaaggtcaggctgagcttgacgttgaccctcaccaaaaattgagtggtacaaaaccattcaagaccattaactgatgttagatgcacagatgagatgtcaacaagaaaatccacctgttatcaaaaccggtttgaaatgtttccttaatatttagggaaattgagctttcattaatcaataccggcgagggtacatccaacatgaaaatatatttttttatttaaagagtcatattgggaattaatttctatcaattaagctctaccaaaatttgcctaacagtactgaaattcctggttcatgtatacaagacaagccccaacattaaaactagcttgcaatactgatttgtcaacctatacagtcatacagacgcatacccgaaagaaacacctactctgtaggaatatgcctgtggttgcagttaacggattagggaccaaaaccttcccatcttgtggcgaaaagctaattgtaccttgcatgatgtactactagtaggggacctctatgccatttgtgtttagtcaagtaatatgggcgcaaagataaggaagattccgcgaaagagtagttggccgattggctcttccagcttgcaaagcgacctctcgccttgccgaaaacttactgttccttttcagatcagcctaagtgcctaactctcccgttaactgggatggctgcatactgatgcatgcagagtagttagcagttgtttttgtctaagtactgcagatagatggataaacagaaaaactaactgctgagtagtgacaagatcagttccggattaacgcgccagattgcgcaaatccagcatagattgtgtagcttgctcccgtactactggtactgatatagtagttattcaggcatatgggatactatgaaatggttcttggtctcgtttggagctattgtttcttggatcacggagccagtagctgctccatgtactttggtcacctgatgcaccaggcaaaacggctcttaagatgtgaggatgcagtagaaaactgctcaacctggcaggcatcctgctgacgcttccgaggcccaaacagcgcaaacaacttgtagcacttggatcaccccagaatcccagataaatcttgctgctgggttcatgcatggtgaaatctgcatctgatttagataatcttgtatttgtcttgcaaacaaatccactttcaagatttgtctgatgcgtgacataagtatagtagtaagaggttgtcaatgtctgcaaagtaagagaggaggagagctgatgatcgaatcagaattttgtgaggtcgtgaagttgcttcagctttaacttcaactatcaacaatcagatactccacaaaagaagtgcctaacgaggcaaccctactgctaagtactagcacacacaaacactagatcaacctgaacctttttccttagcgcgcacatgatttaatcaaaacaactgccattcttccacaataagaaagccgtgcacgcacacatgctagttagctagtagtttcatttctgggatcaatagtatagccgtcacgagtcaaattcaaaaagaaaaataaaggacgatccacacgaccgtttatatgtgtatacacactagcaaggagttgttgatcatctggatgcatcgacttaaggaaaaaggcatatgaccatttcgtgtgactaatcatactcccttaaaattaatcgatctccatttttgtaatcataatcctgcatcatgcaaccccatttcttacttgctctgccaaaggaaggaaattaaacaaaacccgcaaaattatgtttggctgaacagcataccaaaacagggggagggctcttgccattccgatcggccatttattttggccacaaaaccagcccctccatccatccatcgctgctatatttttacctctttgctagctgctccaactcaccgcgttccacgtggcgcatgcatgtttgctagtgatccgggaggccgcgacgaccgccagcgaacggaagggaaaaaaaaaagtcaaaaactagagccgatcgtttgatccattcgatatagggaagatgagtggatgcctctgcctcccccgctataaaaaggccccaaacgggacgccatcgccaccaccaccagcagcagcggccgaagcggaagcagcagcagcagcagcggcgacgaagccgtccatagattcttcttcctccccgtcactcctcaccaacaaccatcccccaccctccaaggtccgtccccctgtctcctcctcctcccgcaccatccgtcaatacagttactgctctcatcatcatccatccatcctcttctcctctctctctccttttcttgattcatccgtcgatcgattcgcgcgggcgtggcttccttttttgttgggcaaagagaaaaaaaagggagatcctttgcatccgctttagatcgccttttgtgcatgcctcgcgtgggcgcagggaacccacaacgacggcgatatcctcctctctcgcatattttcatgatgcatatgggtgtataaaaattttcacgcgtttttgtgtgcgtgtgttcttggtttgggattgggatggcatgagagctgatcggtgtgattaattatttttgcttgcagatggacgccgccgtcgaccgcctcaaggatgggttcgccaagttcaagaccgagttctatgagtaagccccccttgcctatagatggttaatttgagaagaatttgggtagccgcgcgcgcggcgtgagatgaaactgacatgatcaccttgctgtttgtctttttgtctcctccgcagcaagaagccggagctcttcgagccgctcaaggccggccaggcacccaaggtacgctgctccgtccatttcctgctcaaaatttgttcttctttgtctactagtgagccaacccagccagctggagttttacggttactcctccatggccgctacaccgtccatccctcagctcgcaaacctcgtcagcaaaagaaaagccccaaccttttacccccgatctctgcggttgatttggggattcgtgaacacaccttggcccacagattcctaccggtctagatactactgctactcccaggtagaaagtacacgcatgcttgcaacctgcaagcaaggcaaccaggcaaagcatatagccttgtgtttgcccatccggtgtacactgtttacggtgcccacagcatatatggccatcaaggtcaaactggacaaaagttagcagcaactggcctgtccaagttgcctggccaaagttatataagaggatgaacagcttgtcgccggcctgttaggccggggctggctgatcagttatatacgaggatatgataagtacaaccaagattataaaaagagagagggagattagattagattagaatgctccatttggcaggcgtacgcagcgcaatcttaattagtagctcgggtattggtaggccaggcaaagaagctgctgtagtagtggaaatccttcctcataatgcacgcacccaccaccgaagaagacgaggctcgcacctagtaacatgcaggatttcttcaccgtcccccatgtgcttgcccatgttgtgtttccgccgagatgtcgccttcctcgtatagggtttagcatccatcatcactactgttttccttttgatttcttcgttgcgtccagcttaattttagaatagtaagagcaagtttaatagtacagccaactactaactccaattcatatatagctaatctagaaactcattcatacaatagttacatactacactactaatacctgatcccacctgtcatacacacactgtgtcttggagtccgtgctagagctggctacaaatttatagcccactgcttttctctctttttatttagcttcttaaaatatgtttacagctagcttatagcatgctattgtacatgctctaataagctaattaggtcgtcgatcgaggctagggtctcctggcagcgcctcggtctaaattggcgtacgtcgtcctaacatttgggtacaaaaatttggaccggccggcaacctcgctgtacgtgttgatgaatttcaaagttcatttggacacggccattctcatggggatactgcaatgatgcccaaattaatttgggcgatatcatcgtctttgctgaccccacacaagctagaacgtaccgtgaaccacaagttctcttttgtttatagcaacggagaagaaagaaacagtggataaagccttgcagcttgatatactccatactatagctgtagctaagcaaaagtatttcctgtacgacatggcccggaggacatcacataattgtgggcccagcaatcacgcatttgtttgcacgtccaactcaacagcctttaacgaaagtttaggcgcatatccaaccttttgcttacactacattttggcatctgcctcgctatacagtaacttggattggccagccacacgcattgatgagcaggtgcaaaagtccagcagtttgcattacaacatgcgtacatatatactttattaatatcaaatctcctctcccggaaaatgatggcccccatccaaaaacattaatctacgccgcaactgactgcctgctgctgctgctgccgtaagcccgtaatcgatcggccccggcaatttgctaaagggtggggcctgatcgccatgagcatgctttggatgcgtcagctcgcgtcttaatctaatgctcggttatttggccgtttttgtctccgtcggcgttgtcgccagtgggatcgttagttcattaggattagtactaatcagcgcaacagttatatgccccccatgggccatgaactcatactcgtccgtgtcgtgggttatccttgcgtatccgttctgttttctgggtggaaaaagtggtcagggaaaacagagcagacaggtcaaaaagctggcagctttgggggcaagagaacgggaaaaaaatgtcagattcctgtgggggttgtgggcactcggatacgcctatcagcatctgctgcctccttatcgataagagcagtagtggtagtactagtagaacagatgctaatcgcctaatcctaatatgcttattgatctcctgatatggctgtgtaatcgcaaaattactactccactactagttagtgtggagtaatgaactgagctgattgttgggacaaatgcagtacatggtgttctcgtgcgccgactctcgcgtgtgcccgtcggtgaccatgggcctggagcccggcgaggccttcaccgtccgcaacatcgccaacatggtcccagcttactgcaaggtaaccaacttcatcgtacgcgttttcgtcgccggccggtcgattggtaagctagctattccggtcggtcgccgcggtttgcattgattttgacccccctcgtgtgtgtgcgtcaactgcagatcaagcacgctggcgtcgggtcggccatcgagtacgccgtctgcgccctcaaggtcaactctctctctctctctctctctctctctctctctctcacagatagtgctctattatgtcaactatatagtacccgttgctctaattgtgccggcaacttcacacaccggatcagagaaaaatattttcgtacaggctgagaaaaatgggtcgtgtctgacgccagatggtgtgtgaattattttattgatcaagaagaatcttcccttccccacataatccatccagcttaggtttatgtagggtgtgtaacattcatggtgaaggtggtacttgcgttacatatgaatcttgtcaaatcaagcagggagcataattagcgcctttgtttagtatatttggacggtgttagtaggaaagcaccgtactttggtgaaatctattttatgctcatacagcacatgtatgcgtaaagtgtgcgtgcacgatttgattgtggggtattgacctggatcgaataatctgcaggtcgaactcatcgtggtgattggccacagccgctgcggtggaatcaaggccctcctctcactcaaggatggagcaccagactccttgtaagttgctgaacaaaagaaaacttagtgatagtactatagtattggcaacttgggcataactgtatgcagacaaacaaagggttgaagaaataaaaatgttagcgtgtcttgatcatcgtttgtttctgactcgggtttgcactttgattggttcagccacttcgtcgaggactgggtcaggaccggtttccccgccaagaagaaggttcagaccgagcacgcctcgctgcctttcgatgaccaatgcgccatcttggagaaggtaacgcacgtactagtagcatgacaaccactatgcataaatcaaaatgttaaatgaaattggaacatcagaattaattacattcataggaaggacaatcgaactgtctgaaacttgcgttgtctattcaattcagcactgactgaatttctgcgtccctgatcaaaacaattgatctgatgatctgcaggaggccgtgaaccaatccctggagaacctcaagacctacccgttcgtcaaggaggggatcgccaacggcaccctcaagctcgtcggcggccactacgacttcgtctccggcaacttggacttatgggagccctaaatccgaccgtccgtccgttcagttcgtcagtttacgccaacgcttttgcataagtactacctgaggatatcgtccccgatcatcgatgtgaacgcgtggagtactactacgtacgtaccggatggttcgatatatgtgaatgctgtattaagtaataacaagaaatatatctcctctactttttcctgacgcggagttgtactgcctatgatgcataatttgatcgcagtgtgatcaaaagacatcagctataatgtcttaataatattattatgaagagtttacctttttactacctttt
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| CDS seq | atgtcgaccgccgccgccgccgccgctgcccagagctggtgcttcgccactgtcaccccgcgctcccgcgccacagtcgtcgccagcctcgcctccccatcaccgtcctcctcctcctcctcctcctccaacagcagcaacctcccggcccccttccgcccccgcctcatccgcaacacccccgtcttcgccgcccccgtcgcccccgccgcgatggacgccgccgtcgaccgcctcaaggatgggttcgccaagttcaagaccgagttctatgacaagaagccggagctcttcgagccgctcaaggccggccaggcacccaagtacatggtgttctcgtgcgccgactctcgcgtgtgcccgtcggtgaccatgggcctggagcccggcgaggccttcaccgtccgcaacatcgccaacatggtcccagcttactgcaagatcaagcacgctggcgtcgggtcggccatcgagtacgccgtctgcgccctcaaggtcgaactcatcgtggtgattggccacagccgctgcggtggaatcaaggccctcctctcactcaaggatggagcaccagactccttccacttcgtcgaggactgggtcaggaccggtttccccgccaagaagaaggttcagaccgagcacgcctcgctgcctttcgatgaccaatgcgccatcttggagaaggaggccgtgaaccaatccctggagaacctcaagacctacccgttcgtcaaggaggggatcgccaacggcaccctcaagctcgtcggcggccactacgacttcgtctccggcaacttggacttatgggagccctaa
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| Protein seq | MSTAAAAAAAQSWCFATVTPRSRATVVASLASPSPSSSSSSSSNSSNLPAPFRPRLIRNTPVFAAPVAPAAMDAAVDRLKDGFAKFKTEFYDKKPELFEPLKAGQAPKYMVFSCADSRVCPSVTMGLEPGEAFTVRNIANMVPAYCKIKHAGVGSAIEYAVCALKVELIVVIGHSRCGGIKALLSLKDGAPDSFHFVEDWVRTGFPAKKKVQTEHASLPFDDQCAILEKEAVNQSLENLKTYPFVKEGIANGTLKLVGGHYDFVSGNLDLWEP |
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| Function | Carbonic anhydrase, chloroplastic [UniProtKB/Swiss-Prot:P40880] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0025690 | OsLima_01g0025690.05 | Chr01 | 27233864 | 27242347 | + | NAM | ||
| CDS seq | atggacgccgccgtcgaccgcctcaaggatgggttcgccaagttcaagaccgagttctatgacaagaagccggagctcttcgagccgctcaaggccggccaggcacccaagtacatggtgttctcgtgcgccgactctcgcgtgtgcccgtcggtgaccatgggcctggagcccggcgaggccttcaccgtccgcaacatcgccaacatggtcccagcttactgcaagatcaagcacgctggcgtcgggtcggccatcgagtacgccgtctgcgccctcaaggtcgaactcatcgtggtgattggccacagccgctgcggtggaatcaaggccctcctctcactcaaggatggagcaccagactccttccacttcgtcgaggactgggtcaggaccggtttccccgccaagaagaaggttcagaccgagcacgcctcgctgcctttcgatgaccaatgcgccatcttggagaaggaggccgtgaaccaatccctggagaacctcaagacctacccgttcgtcaaggaggggatcgccaacggcaccctcaagctcgtcggcggccactacgacttcgtctccggcaacttggacttatgggagccctaa
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| Protein seq | MDAAVDRLKDGFAKFKTEFYDKKPELFEPLKAGQAPKYMVFSCADSRVCPSVTMGLEPGEAFTVRNIANMVPAYCKIKHAGVGSAIEYAVCALKVELIVVIGHSRCGGIKALLSLKDGAPDSFHFVEDWVRTGFPAKKKVQTEHASLPFDDQCAILEKEAVNQSLENLKTYPFVKEGIANGTLKLVGGHYDFVSGNLDLWEP
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0025690 | OsLima_01g0025690.04 | Chr01 | 27233864 | 27242347 | + | NAM | ||
| CDS seq | atgtcgaccgccgccgccgccgccgctgcccagagctggtgcttcgccactgtcaccccgcgctcccgcgccacagtcgtcgccagcctcgcctccccatcaccgtcctcctcctcctcctcctcctccaacagcagcaacctcccggcccccttccgcccccgcctcatccgcaacacccccgtcttcgccgcccccgtcgcccccgccgcgtacatggtgttctcgtgcgccgactctcgcgtgtgcccgtcggtgaccatgggcctggagcccggcgaggccttcaccgtccgcaacatcgccaacatggtcccagcttactgcaagatcaagcacgctggcgtcgggtcggccatcgagtacgccgtctgcgccctcaaggtcgaactcatcgtggtgattggccacagccgctgcggtggaatcaaggccctcctctcactcaaggatggagcaccagactccttccacttcgtcgaggactgggtcaggaccggtttccccgccaagaagaaggttcagaccgagcacgcctcgctgcctttcgatgaccaatgcgccatcttggagaaggaggccgtgaaccaatccctggagaacctcaagacctacccgttcgtcaaggaggggatcgccaacggcaccctcaagctcgtcggcggccactacgacttcgtctccggcaacttggacttatgggagccctaa
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| Protein seq | MSTAAAAAAAQSWCFATVTPRSRATVVASLASPSPSSSSSSSSNSSNLPAPFRPRLIRNTPVFAAPVAPAAYMVFSCADSRVCPSVTMGLEPGEAFTVRNIANMVPAYCKIKHAGVGSAIEYAVCALKVELIVVIGHSRCGGIKALLSLKDGAPDSFHFVEDWVRTGFPAKKKVQTEHASLPFDDQCAILEKEAVNQSLENLKTYPFVKEGIANGTLKLVGGHYDFVSGNLDLWEP
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0025690 | OsLima_01g0025690.02 | Chr01 | 27233697 | 27242351 | + | NAM | ||
| CDS seq | atgtcgaccgccgccgccgccgccgctgcccagagctggtgcttcgccactgtcaccccgcgctcccgcgccacagtcgtcgccagcctcgcctccccatcaccgtcctcctcctcctcctcctcctccaacagcagcaacctcccggcccccttccgcccccgcctcatccgcaacacccccgtcttcgccgcccccgtcgcccccgccgcgatggacgccgccgtcgaccgcctcaaggatgggttcgccaagttcaagaccgagttctatgacaagaagccggagctcttcgagccgctcaaggccggccaggcacccaagtacatggtgttctcgtgcgccgactctcgcgtgtgcccgtcggtgaccatgggcctggagcccggcgaggccttcaccgtccgcaacatcgccaacatggtcccagcttactgcaagatcaagcacgctggcgtcgggtcggccatcgagtacgccgtctgcgccctcaaggtcgaactcatcgtggtgattggccacagccgctgcggtggaatcaaggccctcctctcactcaaggatggagcaccagactccttccacttcgtcgaggactgggtcaggaccggtttccccgccaagaagaaggttcagaccgagcacgcctcgctgcctttcgatgaccaatgcgccatcttggagaaggaggccgtgaaccaatccctggagaacctcaagacctacccgttcgtcaaggaggggatcgccaacggcaccctcaagctcgtcggcggccactacgacttcgtctccggcaacttggacttatgggagccctaa
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| Protein seq | MSTAAAAAAAQSWCFATVTPRSRATVVASLASPSPSSSSSSSSNSSNLPAPFRPRLIRNTPVFAAPVAPAAMDAAVDRLKDGFAKFKTEFYDKKPELFEPLKAGQAPKYMVFSCADSRVCPSVTMGLEPGEAFTVRNIANMVPAYCKIKHAGVGSAIEYAVCALKVELIVVIGHSRCGGIKALLSLKDGAPDSFHFVEDWVRTGFPAKKKVQTEHASLPFDDQCAILEKEAVNQSLENLKTYPFVKEGIANGTLKLVGGHYDFVSGNLDLWEP
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0025690 | OsLima_01g0025690.03 | Chr01 | 27233864 | 27242347 | + | NAM | ||
| CDS seq | atgtcgaccgccgccgccgccgccgctgcccagagctggtgcttcgccactgtcaccccgcgctcccgcgccacagtcgtcgccagcctcgcctccccatcaccgtcctcctcctcctcctcctcctccaacagcagcaacctcccggcccccttccgcccccgcctcatccgcaacacccccgtcttcgccgcccccgtcgcccccgccgcgatggacgccgccgtcgaccgcctcaaggatgggttcgccaagttcaagaccgagttctatgacaagaagccggagctcttcgagccgctcaaggccggccaggcacccaagtacatggtgttctcgtgcgccgactctcgcgtgtgcccgtcggtgaccatgggcctggagcccggcgaggccttcaccgtccgcaacatcgccaacatggtcccagcttactgcaagatcaagcacgctggcgtcgggtcggccatcgagtacgccgtctgcgccctcaaggtcgaactcatcgtggtgattggccacagccgctgcggtggaatcaaggccctcctctcactcaaggatggagcaccagactccttccacttcgtcgaggactgggtcaggaccggtttccccgccaagaagaaggttcagaccgagcacgcctcgctgcctttcgatgaccaatgcgccatcttggagaaggtaacgcacgtactagtagcatga
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| Protein seq | MSTAAAAAAAQSWCFATVTPRSRATVVASLASPSPSSSSSSSSNSSNLPAPFRPRLIRNTPVFAAPVAPAAMDAAVDRLKDGFAKFKTEFYDKKPELFEPLKAGQAPKYMVFSCADSRVCPSVTMGLEPGEAFTVRNIANMVPAYCKIKHAGVGSAIEYAVCALKVELIVVIGHSRCGGIKALLSLKDGAPDSFHFVEDWVRTGFPAKKKVQTEHASLPFDDQCAILEKVTHVLVA
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0025690 | OsLima_01g0025690.01 | Chr01 | 27229965 | 27242347 | + | NAM | ||
| CDS seq | atgagtggatgcctctgcctcccccgctataaaaaggccccaaacgggacgccatcgccaccaccaccagcagcagcggccgaagcggaagcagcagcagcagcagcggcgacgaagccgtccatagattcttcttcctccccgtcactcctcaccaacaaccatcccccaccctccaagatggacgccgccgtcgaccgcctcaaggatgggttcgccaagttcaagaccgagttctatgacaagaagccggagctcttcgagccgctcaaggccggccaggcacccaagtacatggtgttctcgtgcgccgactctcgcgtgtgcccgtcggtgaccatgggcctggagcccggcgaggccttcaccgtccgcaacatcgccaacatggtcccagcttactgcaagatcaagcacgctggcgtcgggtcggccatcgagtacgccgtctgcgccctcaaggtcgaactcatcgtggtgattggccacagccgctgcggtggaatcaaggccctcctctcactcaaggatggagcaccagactccttccacttcgtcgaggactgggtcaggaccggtttccccgccaagaagaaggttcagaccgagcacgcctcgctgcctttcgatgaccaatgcgccatcttggagaaggaggccgtgaaccaatccctggagaacctcaagacctacccgttcgtcaaggaggggatcgccaacggcaccctcaagctcgtcggcggccactacgacttcgtctccggcaacttggacttatgggagccctaa
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| Protein seq | MSGCLCLPRYKKAPNGTPSPPPPAAAAEAEAAAAAAATKPSIDSSSSPSLLTNNHPPPSKMDAAVDRLKDGFAKFKTEFYDKKPELFEPLKAGQAPKYMVFSCADSRVCPSVTMGLEPGEAFTVRNIANMVPAYCKIKHAGVGSAIEYAVCALKVELIVVIGHSRCGGIKALLSLKDGAPDSFHFVEDWVRTGFPAKKKVQTEHASLPFDDQCAILEKEAVNQSLENLKTYPFVKEGIANGTLKLVGGHYDFVSGNLDLWEP
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0025690 | OsLima_01g0025690.06 | Chr01 | 27233864 | 27242347 | + | NAM | ||
| CDS seq | atgagtggatgcctctgcctcccccgctataaaaaggccccaaacgggacgccatcgccaccaccaccagcagcagcggccgaagcggaagcagcagcagcagcagcggcgacgaagccgtccatagattcttcttcctccccgtcactcctcaccaacaaccatcccccaccctccaagatggacgccgccgtcgaccgcctcaaggatgggttcgccaagttcaagaccgagttctatgacaagaagccggagctcttcgagccgctcaaggccggccaggcacccaagtacatggtgttctcgtgcgccgactctcgcgtgtgcccgtcggtgaccatgggcctggagcccggcgaggccttcaccgtccgcaacatcgccaacatggtcccagcttactgcaagatcaagcacgctggcgtcgggtcggccatcgagtacgccgtctgcgccctcaaggtcgaactcatcgtggtgattggccacagccgctgcggtggaatcaaggccctcctctcactcaaggatggagcaccagactccttccacttcgtcgaggactgggtcaggaccggtttccccgccaagaagaaggttcagaccgagcacgcctcgctgcctttcgatgaccaatgcgccatcttggagaaggaggccgtgaaccaatccctggagaacctcaagacctacccgttcgtcaaggaggggatcgccaacggcaccctcaagctcgtcggcggccactacgacttcgtctccggcaacttggacttatgggagccctaa
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| Protein seq | MSGCLCLPRYKKAPNGTPSPPPPAAAAEAEAAAAAAATKPSIDSSSSPSLLTNNHPPPSKMDAAVDRLKDGFAKFKTEFYDKKPELFEPLKAGQAPKYMVFSCADSRVCPSVTMGLEPGEAFTVRNIANMVPAYCKIKHAGVGSAIEYAVCALKVELIVVIGHSRCGGIKALLSLKDGAPDSFHFVEDWVRTGFPAKKKVQTEHASLPFDDQCAILEKEAVNQSLENLKTYPFVKEGIANGTLKLVGGHYDFVSGNLDLWEP
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0025690 | OsLima_01g0025690.07 | Chr01 | 27233925 | 27242344 | + | IsoSeq | ||
| CDS seq | atgggttcgccaagttcaagaccgagttctatgacaagaagccggagctcttcgagccgctcaaggccggccaggcacccaaggtacgctgctccgtccatttcctgctcaaaatttgttcttctttgtctactagtgagccaacccagccagctggagttttacggttactcctccatggccgctacaccgtccatccctcagctcgcaaacctcgtcagcaaaagaaaagccccaaccttttacccccgatctctgcggttgatttggggattcgtgaacacaccttggcccacagattcctaccggtctagatactactgctactcccaggtagaaagtacacgcatgcttgcaacctgcaagcaaggcaaccaggcaaagcatatagccttgtgtttgcccatccggtgtacactgtttacggtgcccacagcatatatggccatcaaggtcaaactggacaaa
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| Protein seq | MGSPSSRPSSMTRSRSSSSRSRPARHPRYAAPSISCSKFVLLCLLVSQPSQLEFYGYSSMAATPSIPQLANLVSKRKAPTFYPRSLRLIWGFVNTPWPTDSYRSRYYCYSQVESTRMLATCKQGNQAKHIALCLPIRCTLFTVPTAYMAIKVKLDK |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| RI | Chr01 | 27241620 | 27242347 | + | OsLima_01g0025690.03 | OsLima_01g0025690.06,OsLima_01g0025690.05,OsLima_01g0025690.01,OsLima_01g0025690.04,OsLima_01g0025690.03 | All |
| RI | Chr01 | 27238211 | 27240726 | + | OsLima_01g0025690.07 | OsLima_01g0025690.06,OsLima_01g0025690.07,OsLima_01g0025690.02,OsLima_01g0025690.05,OsLima_01g0025690.01,OsLima_01g0025690.03 | All |
| SE | Chr01 | 27234183 | 27238032 | + | OsLima_01g0025690.05 | OsLima_01g0025690.05,OsLima_01g0025690.07,OsLima_01g0025690.03,OsLima_01g0025690.02 | All |
| SE | Chr01 | 27234183 | 27238032 | + | OsLima_01g0025690.06 | OsLima_01g0025690.07,OsLima_01g0025690.03,OsLima_01g0025690.06,OsLima_01g0025690.02 | All |
| A5 | Chr01 | 27237648 | 27238032 | + | OsLima_01g0025690.05 | OsLima_01g0025690.05,OsLima_01g0025690.01,OsLima_01g0025690.06 | All |
| AF | Chr01 | 27229965 | 27237374 | + | OsLima_01g0025690.01 | OsLima_01g0025690.05,OsLima_01g0025690.01,OsLima_01g0025690.06 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 32.656864 | 0.449892 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0639900 | RBH | 774.963318 | 803.596375 | 77.134079 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g45274 | RBH | 476.231140 | 509.304749 | 19.578503 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0639900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0026820 | RBH | 21.276737 | 81.371216 | 28.489862 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0026310 | RBH | 180.097427 | 11.834635 | 72.013260 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0026710 | RBH | 74.858978 | 62.004642 | 84.505707 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0025970 | RBH | 12.715845 | 1.576123 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0025770 | RBH | 982.874084 | 37.953529 | 105.970009 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0432400 | SBH | 0.4614145 | 0.587805 | 0.891094 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0025400 | RBH | 21.573263 | 4.021368 | 21.447603 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0421800 | RBH | 252.035492 | 12.8477195 | 0.063039 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0025700 | RBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0025610 | RBH | 179.218628 | 22.890434 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0025930 | RBH | 1660.532593 | 56.447697 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0025970 | RBH | 126.929604 | 1.360013 | 59.931164 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0025800 | RBH | 89.802528 | 25.695681 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G026130 | RBH | 18.343140 | 4.398612 | 58.133930 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0025910 | RBH | 153.802094 | 140.046265 | 253.696030 |
