Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_01g0021250 | OGI:01068780 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr01:22968990-22974047 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gtgggtcgcgctcgccgaaaacaaagcgccaccgccgcaccacaaggaggaaaaagaaaagaaaggaaaaaggaaaaaaaaatccccaatccaaaacacactccgcccctccgatccccccctctctcaaaccctagctccccccctccccaccaccaatcccccacgcgattcgccggatgcgcccgcccgccgcggcctaggcccctgcggttcaccggcggtggtggggtgagagagcgcgcgccggcgaccggcgaagaggggggggggggggcgatggagccgcgcgtgggcaacaagtaccgcctcgggcggaagctcgggagcggctcgttcggggagatctacctcggttcgtaccgccgctccccgccttgtgggggggtttccgtttttttggtttttttttttttggtggattgtgttctcttctggtgtcgctgaatctgttgggtgtggatttgcgcctgcaggtactaacgtgcagaccaacgaggaggtcgcgattaagctggtgagttgatgcgataatactcatgttttcgcatattctacaattttcctttccctttttttttttgggggggggggggggggtcgtcggggtagtcaattagtggattggggaggaagtgatggataattgttctgaatcaaaataacctatgaattcaccctagcacatttcatcctagcacatttggactggtaatttgtgtaatagaaaggccaataagcactggaacaaatgtcgcctgccatacggcttgggaatattttgatatgggttgggctgtgtaagctcttctgtctctttcacccagctcgtctgtctctttcactctcagtagtttagattagtaaccgtgaattgattttacagtgtattttaaagggatgtggcagctggacccttttcatctgtttacatccatcagcaaaaaatacgtatttgtttacttcgcttctaactgtaaccctgtcatttacaatcttttttttttttaaatgtatgtcacattatcagtgtgagaataatgtttgttattatgtctcactcagtcaatgtctcctgattgtccatttaaacaactgcaggctttgccctatatggttgataagcccctctttggactgatatgcatttctttttctttgcgtttgtccaggagaatgtgaaaacaaagcatccacaattgctgtacgagtcaaagctgtacaggatacttcagggtggaagtaatgcactttcttttatttactttttttttccttttgcattccattttttttccctgggagataacaacctgcattctgtttttgtcctgcagctgggattccaaatgtcaagtggtttggtgttgagggtgattacaatgttttggttatggacttattgggcccaagccttgaggatctctttagcttttgcaacagaaaattgtctctaaaaactgttctaatgcttgctgatcaaatggtacagtatgaaattaaggccaagtgttgttgctctttgtgttattattacatagtagtcctatctggttaaatgcatttgattgtttctaatttctccatatttttattagataaatcgagttgaatttgtacactcaaagtctttcttgcatcgagatattaagccagacaattttctcatgggccttggaaagagggcaaaccaggtaagtgatttaggtgctgtttttgtgcttatagttctaggtcttaattgtaacattaggtggctgtagttacattttctcccttatccgttgtaggtatacatgattgattttggactggcaaagaaataccgggacacttcaacacaccagcacattccatacaggtaatatattgtaatccatctatctatgaggttcatatttattaatcttttatgtttgcatcaaattatcatttttttcacttatgcattactttattaaaattgccttcgcattgcctactgtcacctcactggtcactataactatattgtgtttattcataaaatttggtcatcgatgaaagttttttcttaccaagtgccattcttcttctgagtgagacttctacccgtcttaagaaaccatatgacaattgtctactgaagtgcagagagaacaaaaatttgactgggacagctcgatatgctagtgtaaacacccatcttggaatcggtaagtctggtgcaacttgaattttgatcccatgcctatgttaaatgcacaattgtatgcatttcttcaattattttgtcttgctggtagatctagtttgacaaatgaactttggtatttttttttcaacagaacaaagcagaagggatgaccttgaatctcttggatatgtactcatgtacttcttaagaggaaggttagttatgttagctttatttgattatctgcttatatggtctgttgtgctctaaacaacacatttgctcttcttggtaccagtcttccatggcagggtctaaaagctgggaccaaaaaacagaagtacgagaaaattagcgaacggaagattgctacatcaattgaggtcattcttcccctctgaagatttaattatggctatggaccaacatattcttaccagcattttctttttcatctgcaggctctctgtcgcggatacccttgtgagtttcaatcctacttccattactgccgttcactacgttttgaagatttgccagactatcaatacctgaagagattgttcagagaccttttcattcgagagggttggtttctgcacaaaatgtttcaagaaatgctctttttgggatacctctgacaaattgctgcttctatctgtaggatttcagtttgattacgtttttgactggaccattcttaagtaccagcagtcacagataaccagtgttccaccacgtgctattgtcagtgcaagccaaagcactcctttcctgcagttgcatacccagatgggtatctgacgaatgtccatgctcttttgtttcaggctgcagcagcagggcaaagctctggaatgtctccaatagcaaataataataggctatcaggtatgcaattttacaaattgtaattgactagaaaaaatgcatgtgcgttgcaacgggtgaagtctattttaatcttattattgttatatggtttagttaagatgaaattcactgtgggagttcgcttggatatattttttttagaaaatcatgagctgcagttaggagttctatcgtctcatattagcatgcaagttttttttaaacagatttcctatatgattccttttgtattaccaaaagtgaacgatcttaaaaaccgactcaaatatggatatgtatttccaaaagcaagcgaacttaaaaaccgactcatacacggatgacgtaccaaaataccggcaaaaacacggatgacggaccgcggaaacatctacaatttttataaccgactcaaacacggattacgtcccgcggaaacatctacaatttttatgatagtagagaagagatatagattaaaaccaaaacataaaattaaaaccaactcaaacacggatgatggaccccggaaacatcttcaatttttataatagtagaggagatgtggtgatagctgcttgtttctttacaatttatcatcaaatcacaacacatatatcaggtgattagagcaaaaggtggtgcaacataaattacgattaaaaaatggtaacagtaaaaacagtaagttatgtaaaaaatgttcctttctgtttcctgcctatcagataattgcataacctactcttgcttgtaactgaaatcatggcacacttgatgaggcgaattttgaaaaagattattttgtttctatgacctagctcatatgttttgtgaaatctgcattcattaattctatatggtttatgtcctgaattgatttagccactgaagagggaagaagaagcgggtggtcagatgatcctacacgacgtcaggttccacctacaggaataaatgctggcagcttatcaaaacagaagtccccggttaggccagacatgtccacttcaaaagatgctttggtgagttttttttagttttgtttaggtttgacttgttattgtgataaatgctccatcaaagcctgaagatattttggttatctttttgcgatgtgatatgtgatcctcaattgacttgtagttctctagttcgacaatgttgggtcggtcaagcggatccttaaggcgacctgttgtttctagtagccgagaactgcaaagcagcgaagctgaaccatcacgtagccgcacaccagatgcaagtcctgggacattccaaagaagtgctcctccacgtaggagctcacagatgctcgactattctgaccccaggcattcgtcatctggcaggcatgcagctaacaagaactatgagtccactataagaggcatccaaggcctaaattttgatgccaacgataggatccactactaatattgttgggatcttatgcgtaatcgtttgatctcttgggtataaaaggggaagtgaggagatattttcgacttgctccccctatcctgagatggatgagaatgctggagtgttatggcagcctgctgacccgaagtactggaggctggctggctaaataaagggtcggcctggtactccagcggctatgaccttaaacaacgttttaagccccctgtacatgctcttgtttgctcctattgtgctcttagatgctgtgtgttagtctttttttagatgtcatatcctgtatcaaggttgtcaagatatttgccctctgggtcacgcgtcgtgtgtgcatttcgatgcaattgctgtctgagaaagtgtggaaattgtaagtaacttaaagtgattatttattgacgtgtttgtgtagtgttgcgttttagtttgtgctctgttattttggccgcagagcaatgcattgtctagtgtggagtgttgcattagtttatcacacgtcttattgtttactccgacgaaaacaactttatgctgtatgtgtcttactcgcatatctgttttga
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| CDS seq | atggagccgcgcgtgggcaacaagtaccgcctcgggcggaagctcgggagcggctcgttcggggagatctacctcggtactaacgtgcagaccaacgaggaggtcgcgattaagctggagaatgtgaaaacaaagcatccacaattgctgtacgagtcaaagctgtacaggatacttcagggtggaactgggattccaaatgtcaagtggtttggtgttgagggtgattacaatgttttggttatggacttattgggcccaagccttgaggatctctttagcttttgcaacagaaaattgtctctaaaaactgttctaatgcttgctgatcaaatgataaatcgagttgaatttgtacactcaaagtctttcttgcatcgagatattaagccagacaattttctcatgggccttggaaagagggcaaaccaggtatacatgattgattttggactggcaaagaaataccgggacacttcaacacaccagcacattccatacagagagaacaaaaatttgactgggacagctcgatatgctagtgtaaacacccatcttggaatcgaacaaagcagaagggatgaccttgaatctcttggatatgtactcatgtacttcttaagaggaagtcttccatggcagggtctaaaagctgggaccaaaaaacagaagtacgagaaaattagcgaacggaagattgctacatcaattgaggctctctgtcgcggatacccttccactgaagagggaagaagaagcgggtggtcagatgatcctacacgacgtcaggttccacctacaggaataaatgctggcagcttatcaaaacagaagtccccggttaggccagacatgtccacttcaaaagatgctttgttctctagttcgacaatgttgggtcggtcaagcggatccttaaggcgacctgttgtttctagtagccgagaactgcaaagcagcgaagctgaaccatcacgtagccgcacaccagatgcaagtcctgggacattccaaagaagtgctcctccacgtaggagctcacagatgctcgactattctgaccccaggcattcgtcatctggcaggcatgcagctaacaagaactatgagtccactataagaggcatccaaggcctaaattttgatgccaacgataggatccactactaa
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| Protein seq | MEPRVGNKYRLGRKLGSGSFGEIYLGTNVQTNEEVAIKLENVKTKHPQLLYESKLYRILQGGTGIPNVKWFGVEGDYNVLVMDLLGPSLEDLFSFCNRKLSLKTVLMLADQMINRVEFVHSKSFLHRDIKPDNFLMGLGKRANQVYMIDFGLAKKYRDTSTHQHIPYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYEKISERKIATSIEALCRGYPSTEEGRRSGWSDDPTRRQVPPTGINAGSLSKQKSPVRPDMSTSKDALFSSSTMLGRSSGSLRRPVVSSSRELQSSEAEPSRSRTPDASPGTFQRSAPPRRSSQMLDYSDPRHSSSGRHAANKNYESTIRGIQGLNFDANDRIHY |
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| Function | Casein kinase 1-like protein 1 [UniProtKB/Swiss-Prot:P42158] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0021250 | OsLima_01g0021250.01 | Chr01 | 22968990 | 22973972 | + | NAM | ||
| CDS seq | atggagccgcgcgtgggcaacaagtaccgcctcgggcggaagctcgggagcggctcgttcggggagatctacctcggtactaacgtgcagaccaacgaggaggtcgcgattaagctggagaatgtgaaaacaaagcatccacaattgctgtacgagtcaaagctgtacaggatacttcagggtggaactgggattccaaatgtcaagtggtttggtgttgagggtgattacaatgttttggttatggacttattgggcccaagccttgaggatctctttagcttttgcaacagaaaattgtctctaaaaactgttctaatgcttgctgatcaaatgataaatcgagttgaatttgtacactcaaagtctttcttgcatcgagatattaagccagacaattttctcatgggccttggaaagagggcaaaccaggtatacatgattgattttggactggcaaagaaataccgggacacttcaacacaccagcacattccatacagagagaacaaaaatttgactgggacagctcgatatgctagtgtaaacacccatcttggaatcgaacaaagcagaagggatgaccttgaatctcttggatatgtactcatgtacttcttaagaggaagtcttccatggcagggtctaaaagctgggaccaaaaaacagaagtacgagaaaattagcgaacggaagattgctacatcaattgaggctctctgtcgcggatacccttgtgagtttcaatcctacttccattactgccgttcactacgttttgaagatttgccagactatcaatacctgaagagattgttcagagaccttttcattcgagagggatttcagtttgattacgtttttgactggaccattcttaagtaccagcagtcacagataaccagtgttccaccacgtgctattgtcagtgcaagccaaagcactcctttcctgcagttgcatacccagatgggtatctgccactga
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| Protein seq | MEPRVGNKYRLGRKLGSGSFGEIYLGTNVQTNEEVAIKLENVKTKHPQLLYESKLYRILQGGTGIPNVKWFGVEGDYNVLVMDLLGPSLEDLFSFCNRKLSLKTVLMLADQMINRVEFVHSKSFLHRDIKPDNFLMGLGKRANQVYMIDFGLAKKYRDTSTHQHIPYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYEKISERKIATSIEALCRGYPCEFQSYFHYCRSLRFEDLPDYQYLKRLFRDLFIREGFQFDYVFDWTILKYQQSQITSVPPRAIVSASQSTPFLQLHTQMGICH
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0021250 | OsLima_01g0021250.03 | Chr01 | 22972555 | 22973972 | + | NAM | ||
| CDS seq | atgatggaccccggaaacatcttcaatttttataatagtagaggagatgtggtgatagctgcttgtttctttacaatttatcatcaaatcacaacacatatatcagccactgaagagggaagaagaagcgggtggtcagatgatcctacacgacgtcaggttccacctacaggaataaatgctggcagcttatcaaaacagaagtccccggttaggccagacatgtccacttcaaaagatgctttgttctctagttcgacaatgttgggtcggtcaagcggatccttaaggcgacctgttgtttctagtagccgagaactgcaaagcagcgaagctgaaccatcacgtagccgcacaccagatgcaagtcctgggacattccaaagaagtgctcctccacgtaggagctcacagatgctcgactattctgaccccaggcattcgtcatctggcaggcatgcagctaacaagaactatgagtccactataagaggcatccaaggcctaaattttgatgccaacgataggatccactactaa
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| Protein seq | MMDPGNIFNFYNSRGDVVIAACFFTIYHQITTHISATEEGRRSGWSDDPTRRQVPPTGINAGSLSKQKSPVRPDMSTSKDALFSSSTMLGRSSGSLRRPVVSSSRELQSSEAEPSRSRTPDASPGTFQRSAPPRRSSQMLDYSDPRHSSSGRHAANKNYESTIRGIQGLNFDANDRIHY |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0021250 | OsLima_01g0021250.02 | Chr01 | 22968992 | 22974047 | + | NAM | ||
| CDS seq | atggagccgcgcgtgggcaacaagtaccgcctcgggcggaagctcgggagcggctcgttcggggagatctacctcggtactaacgtgcagaccaacgaggaggtcgcgattaagctggagaatgtgaaaacaaagcatccacaattgctgtacgagtcaaagctgtacaggatacttcagggtggaactgggattccaaatgtcaagtggtttggtgttgagggtgattacaatgttttggttatggacttattgggcccaagccttgaggatctctttagcttttgcaacagaaaattgtctctaaaaactgttctaatgcttgctgatcaaatgataaatcgagttgaatttgtacactcaaagtctttcttgcatcgagatattaagccagacaattttctcatgggccttggaaagagggcaaaccaggtatacatgattgattttggactggcaaagaaataccgggacacttcaacacaccagcacattccatacagagagaacaaaaatttgactgggacagctcgatatgctagtgtaaacacccatcttggaatcgaacaaagcagaagggatgaccttgaatctcttggatatgtactcatgtacttcttaagaggaagtcttccatggcagggtctaaaagctgggaccaaaaaacagaagtacgagaaaattagcgaacggaagattgctacatcaattgaggctctctgtcgcggatacccttccactgaagagggaagaagaagcgggtggtcagatgatcctacacgacgtcaggttccacctacaggaataaatgctggcagcttatcaaaacagaagtccccggttaggccagacatgtccacttcaaaagatgctttgttctctagttcgacaatgttgggtcggtcaagcggatccttaaggcgacctgttgtttctagtagccgagaactgcaaagcagcgaagctgaaccatcacgtagccgcacaccagatgcaagtcctgggacattccaaagaagtgctcctccacgtaggagctcacagatgctcgactattctgaccccaggcattcgtcatctggcaggcatgcagctaacaagaactatgagtccactataagaggcatccaaggcctaaattttgatgccaacgataggatccactactaa
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| Protein seq | MEPRVGNKYRLGRKLGSGSFGEIYLGTNVQTNEEVAIKLENVKTKHPQLLYESKLYRILQGGTGIPNVKWFGVEGDYNVLVMDLLGPSLEDLFSFCNRKLSLKTVLMLADQMINRVEFVHSKSFLHRDIKPDNFLMGLGKRANQVYMIDFGLAKKYRDTSTHQHIPYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYEKISERKIATSIEALCRGYPSTEEGRRSGWSDDPTRRQVPPTGINAGSLSKQKSPVRPDMSTSKDALFSSSTMLGRSSGSLRRPVVSSSRELQSSEAEPSRSRTPDASPGTFQRSAPPRRSSQMLDYSDPRHSSSGRHAANKNYESTIRGIQGLNFDANDRIHY
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0021250 | OsLima_01g0021250.04 | Chr01 | 22969064 | 22973907 | + | IsoSeq | ||
| CDS seq | aaaaaatccccaatccaaaacacactccgcccctccgatccccccctctctcaaaccctagctccccccctccccaccaccaatcccccacgcgattcgccggatgcgcccgcccgccgcggcctaggcccctgcggttcaccggcggtggtg |
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| Protein seq | KKSPIQNTLRPSDPPLSQTLAPPLPTTNPPRDSPDAPARRGLGPCGSPAVV |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.929086 | 1.078676 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0570500 | RBH | 8.494839 | 9.448439 | 24.833668 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g38950 | RBH | 3.929644 | 4.865733 | 4.758982 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0570500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0022180 | RBH | 3.669964 | 84.292862 | 25.449373 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0021810 | RBH | 1.571943 | 8.047791 | 13.689837 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0022120 | RBH | 8.841349 | 64.203217 | 43.168770 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0021500 | RBH | 1.592564 | 1.734118 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0021310 | RBH | 22.233713 | 27.224060 | 77.639526 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0370800 | RBH | 43.260721 | 71.2079695 | 112.893284 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0021280 | RBH | 1.845069 | 3.052269 | 5.104445 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0357700 | RBH | 48.842203 | 90.67984 | 94.0092585 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0028830 | RBH | 0.922089 | 0.561971 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0021160 | RBH | 3.800426 | 53.474304 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0021410 | RBH | 28.203739 | 74.066933 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0021490 | RBH | 4.329478 | 4.964569 | 6.023587 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0021240 | RBH | 2.476568 | 24.043697 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G021550 | RBH | 2.669783 | 14.432685 | 16.013836 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0021270 | RBH | 10.461582 | 72.009918 | 31.109316 |
