Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_01g0020110 | OGI:02078080 | 10/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr01:21503944-21506301 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcacgcactgcacaagagcttgtgcctgtcaccaatcgttgctgcttgctgcagttgcctgattaagtgaggtgctaacgtcgccggccctgacagaggaagagctctgattgagtgaagtgctaacgccgccggcgctgacagaggaagagctctatgtgcgtctatagcactgtgtccttcgatcaatttcgtatatcgctgcgtctgatatataacctcgccaacggtatcagttgcgatctcgcgcgcgactaggatgagcagccatctccttccgtccgcgtgcgtcgcgtcgaccatgcccattcccctccgcatccgcacgccgcgatctcctcctcgcctctcacgcgcgacgcgatctccccctccgctctcgcctgtgattttaacgagcaggtagaaaattagttgggaagggcccactaatgatgatgtggaaaaattttaaatttttgggaaccaaattttagtcatctattggagaagagggtgtattttaggctaaatatgtttttggctgtccccaatacaggatttttgggagtttaattttagtcatctattggagatgctctaagcgggctcatggattggcccgcttgcatccctactctcaggttccatgaatcctagccaaaagttcatcagagaacagtgctttgtcattttgagcacacagctgtgaagacttaggcccatgctatttgaagtttctgatggctgagaagtattgaccaaactggagtgtggacacaaatttcctgccccaaatgtccagtgattcagtccatgttagatgtaataacagagaaactgaggcaacttctgacattctgagtatccgtgaaccgtgattggcataaacatatagcttcagctgccctttatgccacttgtgaagcttctgcttcgaggtgcagacgtgcagcttctgttcattgttagcatgcattatggcatcatgattgattcattctgagaaaattagaaaaaagaaagatgtcagctgtaaatcaccttgattgaatggaagcaatcagatcctcaaataaacatccaaaaccagaaacaaaaatgcctatactgattattataaatcttataagaaacctgatggagtaccagtacctagtatcaaatggatgtcggctagtgataaagcatacttgttaataatttgcagcaacaaccaaaatttcctcacattcatttaatttgatatatcaaacaaatattgctataaatcaaacattgaacttatagcaatgcaatatgcagcctgtggaaaacaacaaaaaaacaaaacagacaataattggcaatactaacttctaccaaaaaataaagagaaacttgatccaaaatatccatccattaaatagcttcagtgcattatgcaagggataattacacctagtccattcgaagccaaatatcgttgcatctagagtaaaaacattaacattttgaaaaaaaactgattggtttaccaatataattctgcaacaaaagggcgaatagatacacatagcaacaatcatgcaccgtgtggaaaattttgaaatctttttttgttgtgttgcaacataaagagtgatcagtgaaacaagacttatcagtgatcacatctaggttctgaacatttctgttctcacggaattagtccgaacagttctgaacctgtccatttatccgaagcttgaatggttctgaaatctatcgtgatgtttgcttgtccaaagtgttacctgggaattggcaaatttgcacaggttggccagaaagaagctctctgtctgctgcagctcaccatcatcttccccgaggtcagcatgttttcgctgtaaaccgcagcgaggaaggcggagaccacctggtgctggagtgagttccactcagctatgtgcagcaaactcactgaaataaattgttgcaagccatagcggattactactgcattgcctccttcgatcatcagacaatcagtttctagctaccttagccataaaaaaaaaatcagagtgttgtgaatttaccttatgtgcatggcgtcatcagcagtccacttggctcaccctagacaaaagaacctcgaattcaagcaaaagccataattttcacttcataataaactcagtaatttcaagcctgaagattaattgtcatcaacagtgagatcaatgttggtgtcacccagtcactgtcaatagcaactcggtacgggcgtgcttgttatccaagctgaagtacctggggttgcccaggtcagcaaagtacctggggttgaagaaaatctttaaatcttacccatgatacactcctaaaaagtttctgaaaactgcttggccccat
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| CDS seq | atggggccaagcagttttcagaaactttttaggagtgtatcatgggtaagatttaaagattttcttcaaccccagcgaaaacatgctgacctcggggaagatgatggtgagctgcagcagacagagagcttctttctggccaacctgtgcaaatttgccaattcccagaattatattggcgagagcggagggggagatcgcgtcgcgcgtgagaggcgaggaggagatcgcggcgtgcggatgcggaggggaatgggcatggtcgacgcgacgcacgcggacggaaggagatggctgctcatcctagtcgcgcgcgagatcgcaactgataccgttggcgaggttatatatcagacgcagcgatatacgaaattgatcgaaggacacagtgctatagacgcacatagagctcttcctctgtcagcgccggcggcgttagcacttcactcaatcagagctcttcctctgtcagggccggcgacgttagcacctcacttaatcaggcaactgcagcaagcagcaacgattggtgacaggcacaagctcttgtgcagtgcgtga
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| Protein seq | MGPSSFQKLFRSVSWVRFKDFLQPQRKHADLGEDDGELQQTESFFLANLCKFANSQNYIGESGGGDRVARERRGGDRGVRMRRGMGMVDATHADGRRWLLILVAREIATDTVGEVIYQTQRYTKLIEGHSAIDAHRALPLSAPAALALHSIRALPLSGPATLAPHLIRQLQQAATIGDRHKLLCSA |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0020110 | OsLima_01g0020110.01 | Chr01 | 21503944 | 21506301 | - | NAM | ||
| CDS seq | atggggccaagcagttttcagaaactttttaggagtgtatcatgggtaagatttaaagattttcttcaaccccagcgaaaacatgctgacctcggggaagatgatggtgagctgcagcagacagagagcttctttctggccaacctgtgcaaatttgccaattcccagaattatattggcgagagcggagggggagatcgcgtcgcgcgtgagaggcgaggaggagatcgcggcgtgcggatgcggaggggaatgggcatggtcgacgcgacgcacgcggacggaaggagatggctgctcatcctagtcgcgcgcgagatcgcaactgataccgttggcgaggttatatatcagacgcagcgatatacgaaattgatcgaaggacacagtgctatagacgcacatagagctcttcctctgtcagcgccggcggcgttagcacttcactcaatcagagctcttcctctgtcagggccggcgacgttagcacctcacttaatcaggcaactgcagcaagcagcaacgattggtgacaggcacaagctcttgtgcagtgcgtga
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| Protein seq | MGPSSFQKLFRSVSWVRFKDFLQPQRKHADLGEDDGELQQTESFFLANLCKFANSQNYIGESGGGDRVARERRGGDRGVRMRRGMGMVDATHADGRRWLLILVAREIATDTVGEVIYQTQRYTKLIEGHSAIDAHRALPLSAPAALALHSIRALPLSGPATLAPHLIRQLQQAATIGDRHKLLCSA |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g36710 | RBH | 0.038536 | 0.000000 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0020930 | RBH | 0.0 | 0.0 | 0.527719 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0020540 | RBH | 0.0 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0020870 | RBH | 0.000000 | 0.0 | 0.558460 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0020260 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0020150 | RBH | 1.256328 | 0.000000 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0448800 | RBH | 0 | 0.1107045 | 0.03944 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0476700 | RBH | 0.027821 | 0.061573 | 0.010562 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
