Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_01g0018600 | OGI:01058550 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr01:19564835-19567706 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | actgtgacgcactagtcttcttcccactcgcggtcgcggcgagtacgtacgcgaccgaatggtgctcctcctgctgctcctgctcgcgctcccggcggcggcgggcgggctggcggcggacgggcaggcgctgctggccttcaaggcggccgtgctgcgggaccccgagggcgcgctcgccgactgggacgcctccaccgccgccgacccctgcgcctggaacggcgtctcctgcggcgccgggtccggggccgggggagccgaccgccgcgtcgtggcgctgtccctcccgaggaagggcctcgtgggctccctcccggcgtcgccgctcccggcctcgctccgccacctcaacctccgcagcaaccgcctcttcggcgagctccccgcgccgctcctctccgccgcggcggggctgcagagcgtcgtgctgtacgggaacgagctgtacgggtcgatcccgccggagctcggtgacctcccctacctccaaatcctcgacctctcctccaactccctcaacggcacgctcccgcccgcgatcctgagatgccgccgcctccgctccctcgcgctcggctggaacaacctcaccggcgcgctgccgcaggggtttgccaggggcctgtcggcgctggagcacctcgatttgtcccacaaccacttctccggcgccgtcccggaggacatcggcaacctgtccaggctcgaggggacggtcgacctctcgcacaaccagttctccggccagattccggcgagccttggaagattgccggagaaggtctacattgatctcacgtacaacaatctgtccggcccgattccgcagaatggggcgctggagaaccgggggccgacggcgttcgtcggcaacccgggcctctgcgggccgccgctcaagaacccgtgctcgccggacgccatgccgtcgtccaatccgtttgtgcccaaggatgggggctccggcgcccccggtgctgggaagaacaaggggttggggaaggttgccattgtagccattgtgctcagtgatgtggtggggattctgatcattgcactggtgttcttctactgctattggagggctgtttcctccaaggagaaggggaatggtggggctgctggttcaaaggggtccaggtgtggcaaggattgtgggtgttttagccgggacgaatccgccacgccgtcggagcacaccgagcagtatgacctcgtgccgttggaccagcaagtgaggttcgatctcgatgagctgctcaaggcatcagcatttgtgcttgggaagagcggcatcgggatcgtgtataaggtggttcttgaggacgggcttacgatggccgtcaggcggctaggagaagggggactgcagaggtttaaggagttccagactgaggttgaggccattggcaaggtccgccatcccagcattgttaccttgagggcttattactggtcttatgatgagaagttgttgatatatgattacatccctaatggcagcctctctgcagcaatccatggtatgcattacttatttgctgagtttcacatgactggtcaattggcataagaaaagtgccacagtagaatcacatctttgcatatattatgattttggtttgttaatttattacactaggactcaaggacactaattaggtatgcttttggccaataactcatccctctgctctagaaattagtactgggaattcaatttggatgaacttcgttattttgctaggcgttttttatgctaccagcttatgcaaattcagttcattcattctgaaatagacttttgctagttggctgattcttattttctaggattagtgccatgagcactctctctgttctaaaaaagtgagcattaatttcaagcaagtgatgccatcactaaatactaatacggttcggtaattttttttatcggtttcaggtaaacctgggacaatgacattcacaccattgccatgggatggacgtctaaaaatcatgcaaggggttgcaaaggggctatctttcttgcatgaatttagccctaaaaagtatgtccatggggacttaaggccaaataatgtcctccttggatcaaacatggagccatacatatcagattttggactcggacggcttgcaaatattgctggaggatcacctttcacacaatcagatcatgctggtatagagaaagctcagagccagcagtccgatgcctcggtgagccctcttgtgggcaaaagatcatgctatcaagcaccagaagcactgaaaacactgaaaccatctcagaaatgggatgtattctcctatggtgtgatcttgctggaaatgatcactggcagatcgccggttgttctcttggagactatgcagatggaccttgtgcaatgggtgcagttctgtattgaagaaaagaaaccatctgccgatgtgcttgatccttctctcgccagagactctgaacgggaagatgagatgatcgcagcactgaaagttgctctcgcttgcgttcaggccaatccagagcgaaggccctctatgaggcatgtcgcagaaaccctggatcacctcaatggttcaggctagaaaagtagtatcatggaaggtggtcattttttagagcatttgatggttgtacagctcaaggaaggcaaggaagcttaggtgactcaagcttcatcagttcgctatgtaaaattgtcattttcgcaggaccctcagattctgctccgctcttaacatgttagatagcccttttctgttagcttgctatcatgagttatgactattgtgcttgcctataagtcatgggaatgggtgaatttaactgtgtatgcttgcagcttgctctctgatagtc
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| CDS seq | atggtgctcctcctgctgctcctgctcgcgctcccggcggcggcgggcgggctggcggcggacgggcaggcgctgctggccttcaaggcggccgtgctgcgggaccccgagggcgcgctcgccgactgggacgcctccaccgccgccgacccctgcgcctggaacggcgtctcctgcggcgccgggtccggggccgggggagccgaccgccgcgtcgtggcgctgtccctcccgaggaagggcctcgtgggctccctcccggcgtcgccgctcccggcctcgctccgccacctcaacctccgcagcaaccgcctcttcggcgagctccccgcgccgctcctctccgccgcggcggggctgcagagcgtcgtgctgtacgggaacgagctgtacgggtcgatcccgccggagctcggtgacctcccctacctccaaatcctcgacctctcctccaactccctcaacggcacgctcccgcccgcgatcctgagatgccgccgcctccgctccctcgcgctcggctggaacaacctcaccggcgcgctgccgcaggggtttgccaggggcctgtcggcgctggagcacctcgatttgtcccacaaccacttctccggcgccgtcccggaggacatcggcaacctgtccaggctcgaggggacggtcgacctctcgcacaaccagttctccggccagattccggcgagccttggaagattgccggagaaggtctacattgatctcacgtacaacaatctgtccggcccgattccgcagaatggggcgctggagaaccgggggccgacggcgttcgtcggcaacccgggcctctgcgggccgccgctcaagaacccgtgctcgccggacgccatgccgtcgtccaatccgtttgtgcccaaggatgggggctccggcgcccccggtgctgggaagaacaaggggttggggaaggttgccattgtagccattgtgctcagtgatgtggtggggattctgatcattgcactggtgttcttctactgctattggagggctgtttcctccaaggagaaggggaatggtggggctgctggttcaaaggggtccaggtgtggcaaggattgtgggtgttttagccgggacgaatccgccacgccgtcggagcacaccgagcagtatgacctcgtgccgttggaccagcaagtgaggttcgatctcgatgagctgctcaaggcatcagcatttgtgcttgggaagagcggcatcgggatcgtgtataaggtggttcttgaggacgggcttacgatggccgtcaggcggctaggagaagggggactgcagaggtttaaggagttccagactgaggttgaggccattggcaaggtccgccatcccagcattgttaccttgagggcttattactggtcttatgatgagaagttgttgatatatgattacatccctaatggcagcctctctgcagcaatccatggtaaacctgggacaatgacattcacaccattgccatgggatggacgtctaaaaatcatgcaaggggttgcaaaggggctatctttcttgcatgaatttagccctaaaaagtatgtccatggggacttaaggccaaataatgtcctccttggatcaaacatggagccatacatatcagattttggactcggacggcttgcaaatattgctggaggatcacctttcacacaatcagatcatgctggtatagagaaagctcagagccagcagtccgatgcctcggtgagccctcttgtgggcaaaagatcatgctatcaagcaccagaagcactgaaaacactgaaaccatctcagaaatgggatgtattctcctatggtgtgatcttgctggaaatgatcactggcagatcgccggttgttctcttggagactatgcagatggaccttgtgcaatgggtgcagttctgtattgaagaaaagaaaccatctgccgatgtgcttgatccttctctcgccagagactctgaacgggaagatgagatgatcgcagcactgaaagttgctctcgcttgcgttcaggccaatccagagcgaaggccctctatgaggcatgtcgcagaaaccctggatcacctcaatggttcaggctag
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| Protein seq | MVLLLLLLLALPAAAGGLAADGQALLAFKAAVLRDPEGALADWDASTAADPCAWNGVSCGAGSGAGGADRRVVALSLPRKGLVGSLPASPLPASLRHLNLRSNRLFGELPAPLLSAAAGLQSVVLYGNELYGSIPPELGDLPYLQILDLSSNSLNGTLPPAILRCRRLRSLALGWNNLTGALPQGFARGLSALEHLDLSHNHFSGAVPEDIGNLSRLEGTVDLSHNQFSGQIPASLGRLPEKVYIDLTYNNLSGPIPQNGALENRGPTAFVGNPGLCGPPLKNPCSPDAMPSSNPFVPKDGGSGAPGAGKNKGLGKVAIVAIVLSDVVGILIIALVFFYCYWRAVSSKEKGNGGAAGSKGSRCGKDCGCFSRDESATPSEHTEQYDLVPLDQQVRFDLDELLKASAFVLGKSGIGIVYKVVLEDGLTMAVRRLGEGGLQRFKEFQTEVEAIGKVRHPSIVTLRAYYWSYDEKLLIYDYIPNGSLSAAIHGKPGTMTFTPLPWDGRLKIMQGVAKGLSFLHEFSPKKYVHGDLRPNNVLLGSNMEPYISDFGLGRLANIAGGSPFTQSDHAGIEKAQSQQSDASVSPLVGKRSCYQAPEALKTLKPSQKWDVFSYGVILLEMITGRSPVVLLETMQMDLVQWVQFCIEEKKPSADVLDPSLARDSEREDEMIAALKVALACVQANPERRPSMRHVAETLDHLNGSG |
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| Function | Receptor protein kinase-like protein ZAR1 [UniProtKB/Swiss-Prot:Q9ZU46] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0018600 | OsLima_01g0018600.01 | Chr01 | 19564835 | 19567706 | + | NAM | ||
| CDS seq | atggtgctcctcctgctgctcctgctcgcgctcccggcggcggcgggcgggctggcggcggacgggcaggcgctgctggccttcaaggcggccgtgctgcgggaccccgagggcgcgctcgccgactgggacgcctccaccgccgccgacccctgcgcctggaacggcgtctcctgcggcgccgggtccggggccgggggagccgaccgccgcgtcgtggcgctgtccctcccgaggaagggcctcgtgggctccctcccggcgtcgccgctcccggcctcgctccgccacctcaacctccgcagcaaccgcctcttcggcgagctccccgcgccgctcctctccgccgcggcggggctgcagagcgtcgtgctgtacgggaacgagctgtacgggtcgatcccgccggagctcggtgacctcccctacctccaaatcctcgacctctcctccaactccctcaacggcacgctcccgcccgcgatcctgagatgccgccgcctccgctccctcgcgctcggctggaacaacctcaccggcgcgctgccgcaggggtttgccaggggcctgtcggcgctggagcacctcgatttgtcccacaaccacttctccggcgccgtcccggaggacatcggcaacctgtccaggctcgaggggacggtcgacctctcgcacaaccagttctccggccagattccggcgagccttggaagattgccggagaaggtctacattgatctcacgtacaacaatctgtccggcccgattccgcagaatggggcgctggagaaccgggggccgacggcgttcgtcggcaacccgggcctctgcgggccgccgctcaagaacccgtgctcgccggacgccatgccgtcgtccaatccgtttgtgcccaaggatgggggctccggcgcccccggtgctgggaagaacaaggggttggggaaggttgccattgtagccattgtgctcagtgatgtggtggggattctgatcattgcactggtgttcttctactgctattggagggctgtttcctccaaggagaaggggaatggtggggctgctggttcaaaggggtccaggtgtggcaaggattgtgggtgttttagccgggacgaatccgccacgccgtcggagcacaccgagcagtatgacctcgtgccgttggaccagcaagtgaggttcgatctcgatgagctgctcaaggcatcagcatttgtgcttgggaagagcggcatcgggatcgtgtataaggtggttcttgaggacgggcttacgatggccgtcaggcggctaggagaagggggactgcagaggtttaaggagttccagactgaggttgaggccattggcaaggtccgccatcccagcattgttaccttgagggcttattactggtcttatgatgagaagttgttgatatatgattacatccctaatggcagcctctctgcagcaatccatggtaaacctgggacaatgacattcacaccattgccatgggatggacgtctaaaaatcatgcaaggggttgcaaaggggctatctttcttgcatgaatttagccctaaaaagtatgtccatggggacttaaggccaaataatgtcctccttggatcaaacatggagccatacatatcagattttggactcggacggcttgcaaatattgctggaggatcacctttcacacaatcagatcatgctggtatagagaaagctcagagccagcagtccgatgcctcggtgagccctcttgtgggcaaaagatcatgctatcaagcaccagaagcactgaaaacactgaaaccatctcagaaatgggatgtattctcctatggtgtgatcttgctggaaatgatcactggcagatcgccggttgttctcttggagactatgcagatggaccttgtgcaatgggtgcagttctgtattgaagaaaagaaaccatctgccgatgtgcttgatccttctctcgccagagactctgaacgggaagatgagatgatcgcagcactgaaagttgctctcgcttgcgttcaggccaatccagagcgaaggccctctatgaggcatgtcgcagaaaccctggatcacctcaatggttcaggctag
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| Protein seq | MVLLLLLLLALPAAAGGLAADGQALLAFKAAVLRDPEGALADWDASTAADPCAWNGVSCGAGSGAGGADRRVVALSLPRKGLVGSLPASPLPASLRHLNLRSNRLFGELPAPLLSAAAGLQSVVLYGNELYGSIPPELGDLPYLQILDLSSNSLNGTLPPAILRCRRLRSLALGWNNLTGALPQGFARGLSALEHLDLSHNHFSGAVPEDIGNLSRLEGTVDLSHNQFSGQIPASLGRLPEKVYIDLTYNNLSGPIPQNGALENRGPTAFVGNPGLCGPPLKNPCSPDAMPSSNPFVPKDGGSGAPGAGKNKGLGKVAIVAIVLSDVVGILIIALVFFYCYWRAVSSKEKGNGGAAGSKGSRCGKDCGCFSRDESATPSEHTEQYDLVPLDQQVRFDLDELLKASAFVLGKSGIGIVYKVVLEDGLTMAVRRLGEGGLQRFKEFQTEVEAIGKVRHPSIVTLRAYYWSYDEKLLIYDYIPNGSLSAAIHGKPGTMTFTPLPWDGRLKIMQGVAKGLSFLHEFSPKKYVHGDLRPNNVLLGSNMEPYISDFGLGRLANIAGGSPFTQSDHAGIEKAQSQQSDASVSPLVGKRSCYQAPEALKTLKPSQKWDVFSYGVILLEMITGRSPVVLLETMQMDLVQWVQFCIEEKKPSADVLDPSLARDSEREDEMIAALKVALACVQANPERRPSMRHVAETLDHLNGSG
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.099191 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0514700 | RBH | 0.093327 | 0.000000 | 2.201721 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g33090 | RBH | 0.157152 | 0.064200 | 0.565253 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0514700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0019370 | RBH | 0.0 | 3.044586 | 4.337610 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0019000 | RBH | 0.0 | 0.441465 | 1.472755 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0019270 | RBH | 0.0 | 1.705789 | 6.076422 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0018680 | RBH | 0.0 | 0.284240 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0018590 | RBH | 0.427279 | 9.851993 | 5.914354 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0312000 | RBH | 1.470142 | 5.988732 | 4.4551865 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0018650 | RBH | 0.038983 | 0.262835 | 0.335667 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0308600 | RBH | 1.6351755 | 3.9403275 | 10.621084 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0018550 | RBH | 0.0 | 6.412573 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0018790 | RBH | 0.0 | 2.682342 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0018560 | RBH | 0.244297 | 0.097439 | 0.845668 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0018460 | RBH | 0.0 | 4.037656 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G018980 | RBH | 0.0 | 2.176200 | 2.036433 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0018660 | RBH | 0.341069 | 3.226985 | 1.094421 |
