Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_01g0017290 | OGI:01051180 | 15/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr01:16585675-16588626 | ||||||||
| Gene Symbol | MSL03, OsMSL03, MSL3 | ||||||||||
| DNA seq | ctgagatagttcttgatctccatggaccatcatcagccatcttaatttgttgccaccagcctgtagtggagagatggagcagaatataaattatgttatcagcagaacaatcacagtacaaatgcaatattaatgccaaaaatctaactacttagtgatggtcaaatttctgccaattacagtAaacttttcctAaaactagaaaaataggtgtgtctcattccagtaaactttcttgaaagattgtcacagcccctacactatagttacatggattcacgaatcatatttttgaactgagatgtaaaaaaagatcaatgatgaagctagcagttcatgtatacaacatatatagcatatggaggaacaaaatcggttcatgtacacaaaaattccgatgttcattacagctgaaagtactcacacgataaatataccatatgatggaaatatacctgtaagaggtgtgttgcagaggtgcaacacagtagacatcaaagcctaattgttcctgaaataaaacatatataaGggGTAAATTAAAAGGCTCTATATATGACAAAAAGGGGAAATTATATGCTAATTACCCTACCATGGTTATGCACGCTGCGTATTCCGGAACCGGTTCCAAATATGCTCAAGTAAATTAGTTTTAAGCTGGGTATGCATCGAACAAGCACGAATAGCAGCTTTCCTACTTAGCACATCACGAAAACATGGGTTACCACCACTGGTTACTTCTAGAGGCAGTACTATTGATGTCCTAGGAATTCTATTAAGGTCTAGGTCACATATTGCATCCTCGCCCTCGTCTTCAACAATCATATTATGGAGAATCACGCAAGCTAGCATAATATTTCCAACACTCTTTCTCTTCCATTTCTTTGCCGGACGACGTACATTGTTGAAACGAGCTTGCAATACCCCGAAAGCCCGCTCCACATCTTTTCTCGCCCCCTCTTGATGTTCAGCATATAACTTATGCTTCTCTGTTTGTGGAAGTCGTATAGTCTTCTGGAATACAGCCCATTCAGGATATATACCATCAGCTAGGTAATACCCATGGTTGTACTCTTCCCCGTTGACATAATAATGGACCCGAGGAGCCTCACCTCTTACTGTGTCAAGGAAAAGAGGGGACTGATTCAGCACGTTGATGTCGTTGTTAGAACCAGCGACACCAAAGAAGGCATGCCAAATCCATAGGTCGTGTGAAGCAACTGCTTCGAGGATAATTATTGGGACTTTGTAATCACCACGGGAGAATTGACCCCTCCAAGCCCTCGGACAACTTTAACACCTCCAGTGCATACAATCAATACTACCTAGCATACCCGGAAACCCACGAGAgactcgttaacttgtcaagctgatccaaatatgcatgacatttgggttgagtttttagttcattccaacactgagtaagcaagaatggcccatccttgaagtcattctcatatattttctgcgccttggccatgagatcaacattacactccccactagcatataatgaattagcttccttccaagagcaacAaaaattcccaacttttttcttgatcttactaaaacggtccttaacttgcttaacttgcctaaaccggcttgacggagtagtgctattgtAagcagcagcaacatcagcccaatatttatcAttctttttgaaattcgattctatcggatcatttgagttgtttAaccaagcactgacctacaatttccaaatattttactattcttaaattgcaagtattatgaatgccactaccaaataaataactcgcgtaagacacttaccagcctcaagtcttcttcagttgaccagcctaggcgcttctcggtcctagtggcattaccattgttgccattctcaacattaattggctgcaactgacgcccttcagtcacatggtgcatagggttcgtggtgtttttgataaaatcaaccaaaccaccgagcgggcgagattctagtcccctatatgaaaatcatgaacatggaaatcttgatcaagttatgtcccatatatAaaaaggaatgaataagccaatcttgatcaatgcaaagcctaacccaatattaccccagtataatggtatattgataagtgcaatcaaaatTAttttATtttatttttgaactcaaaattatttTAttttagtacatagtggtAaatgagtgctcgaatctaaaacaaattagcaATacatgtaacattggacttttgtttttactttgccaaattactgcataaatacatggttaccaccactgctaattaccctagcatgattaccctacatgtaacattggactcttgtttttacttagccaaattactgcataaatatatgatacaaatcattgcagaccaaattacatgggccaagttactacggtaacctgattatcagaacaaaatcaccttttttttccctaaacaaatcattgcactagcgctgttatggatcaaaacaataacgaccatggaactctgaatattagacagggaaacagaagcatatcAaaatcagaactgataaagccaaataataaatgtaccattgttccaaatcaatttggacgtccgtcttggcatcagtaggaggacgatatgcagatgagcccgccatggcttgtgacggtggaaaaggaaaccatgatgtctgtggggtggggaacaaaggacctccatatggatacggtgctgccggcaggatatgaacaccgggaggaccagatgagcttgcagatgagtttgcagtggcgcaagggggtggcgcaacctctctcttcgtccgacgagacatggtggaaGggaactagggttttggtgcggtagaactgtggaagaggacaggggcggcggccgtcgatctatccaccggggagatggattttaggggcgattttggggctttggcattgttctacctgccagc
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| CDS seq | atgtctcgtcggacgaagagagaggttgcgccacccccttgcgccactgcaaactcatctgcaagctcatctggtcctcccggtgttcatatcctgccggcagcaccgtatccatatggaggtcctttgttccccaccccacagacatcatggtttccttttccaccgtcacaagccatggcgggctcatctgcatatcgtcctcctactgatgccaagacggacgtccaaattgatttggaacaatggggactagaatctcgcccgctcggtggtttggttgattttatcaaaaacaccacgaaccctatgcaccatgtgactgaagggcgtcagttgcagccaattaatgttgagaatggcaacaatggtaatgccactaggaccgagaagcgcctaggctggtcaactgaagaagacttgaggctggaacaattaggctttgatgtctactgtgttgcacctctgcaacacacctcttacaggctggtggcaacaaattaa
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| Protein seq | MSRRTKREVAPPPCATANSSASSSGPPGVHILPAAPYPYGGPLFPTPQTSWFPFPPSQAMAGSSAYRPPTDAKTDVQIDLEQWGLESRPLGGLVDFIKNTTNPMHHVTEGRQLQPINVENGNNGNATRTEKRLGWSTEEDLRLEQLGFDVYCVAPLQHTSYRLVATN |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0017290 | OsLima_01g0017290.01 | Chr01 | 16585675 | 16588626 | - | NAM | ||
| CDS seq | atgtctcgtcggacgaagagagaggttgcgccacccccttgcgccactgcaaactcatctgcaagctcatctggtcctcccggtgttcatatcctgccggcagcaccgtatccatatggaggtcctttgttccccaccccacagacatcatggtttccttttccaccgtcacaagccatggcgggctcatctgcatatcgtcctcctactgatgccaagacggacgtccaaattgatttggaacaatggggactagaatctcgcccgctcggtggtttggttgattttatcaaaaacaccacgaaccctatgcaccatgtgactgaagggcgtcagttgcagccaattaatgttgagaatggcaacaatggtaatgccactaggaccgagaagcgcctaggctggtcaactgaagaagacttgaggctggaacaattaggctttgatgtctactgtgttgcacctctgcaacacacctcttacaggctggtggcaacaaattaa
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| Protein seq | MSRRTKREVAPPPCATANSSASSSGPPGVHILPAAPYPYGGPLFPTPQTSWFPFPPSQAMAGSSAYRPPTDAKTDVQIDLEQWGLESRPLGGLVDFIKNTTNPMHHVTEGRQLQPINVENGNNGNATRTEKRLGWSTEEDLRLEQLGFDVYCVAPLQHTSYRLVATN |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0018110 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0017780 | RBH | 0.0 | 0.0 | 0.581680 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0018020 | RBH | 0.0 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0017380 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0017280 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0271900 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0017430 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0269700 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0013010 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0017270 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0017510 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0017280 | RBH | 0.0 | 0.0 | 1.010512 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0017170 | RBH | 0.000000 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G017770 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0017360 | RBH | 0.0 | 0.0 | 1.678433 |
