Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_01g0017000 | OGI:01049080 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr01:16060688-16064353 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ctaggagttgacggcgttgcacctcttcctgatctggccggcggcgccggtgagcacgccgatctgacccatgcgcttgatggagttcttgaagtggtcgaggaagacgccggggtcccgcagcttgtcgacgagcgcggcggcgcggccgtcggtgagcagcgtggcgtcggaggtgaacatcccctgccgcgccttgaggttcacgaagtagtggctgtcgaacgacacgctgctgcccgggtccatcggcaccaccgtcgagttgtcgtttgggtcctgctggttacgcctgcactgCccctgcacttgcgcgcgcgcgcacacacacacacacaattattgctgtagtacatatttttctatgctttttttttccctttttgcagctactgatcttaattctgaattttgcaagacatgatgcgattaaattactgcagagattagccattactccactaattaacaggttaattaattacctggaggaatctggcgtaggatgggttgagggacgggtcgacgtcgctggggttgttctttccggtgaagttgaagagcctagagctgaaaaggttgcagtgcccgattccgatggtgtgcccgcctatatattaatcgatcagagtgttcaactcaacaaaattagccatagtacgttgttttggtcttgatccacacgatccaaaaaagttcatatagaccgaacgaatcattttacatatttatgtactataagttgctccaccttacatgctcttgtaccatcagttccaaaattaaatttgacttgtttcattaagattagttttcaaatattaactttgcgaaaaacaaggacttacattaacatagagaatatgtataaaattgtgtaattctattcaaaggatttatgtttatgggtcttatccaatagatagtggcacgacccatgcgaaccacagagcaagtagcttttaagatgaacagctgtatgataataacactgatgagaaaccgatgctttctagtaacataccgctcaagataacatgtgatgagtttcacgcgctctaaatatgggtcgcacgctgttaggaggattgtttgctatctaagcggtaccgtctattctacttaattaagtactgcagtcatccatcctactttagtacttgtggtgagtagttcgtcttacaacaatccaaaaatggattgtggtaataatgttgaatatgaataaaaaaacattcatgtttggtataaattttttttatccgatgtttgatttgaatttttttaattcctaaagctgctatcttgactgggattactttcccaaggattgttttttttttatctaccgaattgaagctaaatctatccaatctggtggttgcatcttcgtactgttttggctcacatgcgcattaaccggacgtgcatgtggcctgtggtgaagtttaattaattctttgccccatcaccgacaattatgtcattttcagctgggctattgcaatcaagcggttgttttcacactacgggaacaattgtctttaatcaacatgcttcaattcaaatccatgcaacctttcgtatggacggttttctttttctttttacaaattttactttacttgagaaagtaactaaatgtatcaagattttaaactaaaaactttaataccttgagatattagtagataccaaattttacgattcgaaatgtgttatcttttttacctttacaaggatgataaaattatttccctttttgcattaagaaatgtcaaagtagaatttttcttgagaaatgtcgtgaactaggtcactagacaacttggaaaacatattacaggttaatacaaggcatatacaaatctacaaaatatataggccctagctagttaaacaattttgatactgctgaagtgataaatcaagaaatcaaccccaatgattagttgtccctgtgctttgtggtctaattttggatggcgtaaccggccagtactgttcttttattcgtcttccgtgtgtgtcgttgtgttttggtcgagttcatcagttttgttcagaaaacggatgctttcatggatgtacttaggctgagttcggcactccatcttctcaacccgcatctctcgtttttcacgcgcacgctttttaaacaactaaacagtgtgtttttttaaaaaaaatttctatgcgaaagttgctttaaaaagtcaaattgatctatttttttaaaaaatagctaatacttaattaatcttgttaaaagaccgctccgttttgcgtgtaaaagagatgggttcccatcctgcactgccgaacgcagtcttaatgaactgcccattatctaagaaaataattagtctctgtacgtatacttcttcagtgatcgatgcaagcaatgcaagaaattgtgtacgtacctgagaggacgacgaggtcctggagaccgaggcccttggcggagaagttggcgaggaggatggggaaggtggaggtgggcgccgggatgtcggcgagcgcctcctggtcgctggacaccgtgccgtcgcgcctcccggtctccacctcccacaggctcctcctgtactggtacgacaccgagtcccgcgccgccagcgccacgatgtccgcgcacgacaccaccccggcgcactcccgctccaccgccgccttcacctcctcgatcacctcgaaccccgccagcgacaggttcggcgccgcgttcttctccgccgtgttgctcgccgagtccagaagcaccgacgcgtcacaccccttcatgtacattatatatccatttgcacacatcaagaatacaattgtgcatggtgtatcgtttggatatactctctctctctatttcagtttataactcgttctgactttcgagttcggctaagtttatagaaaaaataaaaatatttttaacacaaaacaaatatatcataaaaatatattcaattatcgatctaaaactaatttagacaaatatattatgaaatatattcaattataaatttaatgaaactaatttggtgttgtaaatattactatggttgtgctcgggagaaggggttgggaacctctcctcccaagcgaagcacgtattattacatgattcattaagtcctaactattttttaaaaaatagattaatatgatttttttaaacaacttctgtatatgtttttttttcagaaaacatacagtttagcagtttgaaaagcgtgcgcgtggaaaacgagagatgtgagttgggaaaagggggaagaacacatcctatatatatatgtctacaaacttaattaaatttgaagtagtttaactttaatcagtcaaaatatcctataatctacagaggggaatatatatatgattggccagtatatggatatattcaatttgtgtgcgtaccctgacgaagcagtcgtggaagaacatgcggaggaacttggcggcgagctccgggttgccggcgacgcggttccacaccacccgctgcgcgatctcctccgccttggggcagctcttcttgtagaaccccttcttcagcccggccgcctgcgccgccgcaatgccgctgctgccggcgaataccaacaccacggcggcggcggcgatcaagcataccaagcccttattattggcgcctccctgcat
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| CDS seq | atgcagggaggcgccaataataagggcttggtatgcttgatcgccgccgccgccgtggtgttggtattcgccggcagcagcggcattgcggcggcgcaggcggccgggctgaagaaggggttctacaagaagagctgccccaaggcggaggagatcgcgcagcgggtggtgtggaaccgcgtcgccggcaacccggagctcgccgccaagttcctccgcatcaacacggcggagaagaacgcggcgccgaacctgtcgctggcggggttcgaggtgatcgaggaggtgaaggcggcggtggagcgggagtgcgccggggtggtgtcgtgcgcggacatcgtggcgctggcggcgcgggactcggtgtcgtaccagtacaggaggagcctgtgggaggtggagaccgggaggcgcgacggcacggtgtccagcgaccaggaggcgctcgccgacatcccggcgcccacctccaccttccccatcctcctcgccaacttctccgccaagggcctcggtctccaggacctcgtcgtcctctcagtgcagggGcagtgcaggcgtaaccagcaggacccaaacgacaactcgacggtggtgccgatggacccgggcagcagcgtgtcgttcgacagccactacttcgtgaacctcaaggcgcggcaggggatgttcacctccgacgccacgctgctcaccgacggccgcgccgccgcgctcgtcgacaagctgcgggaccccggcgtcttcctcgaccacttcaagaactccatcaagcgcatgggtcagatcggcgtgctcaccggcgccgccggccagatcaggaagaggtgcaacgccgtcaactcctag
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| Protein seq | MQGGANNKGLVCLIAAAAVVLVFAGSSGIAAAQAAGLKKGFYKKSCPKAEEIAQRVVWNRVAGNPELAAKFLRINTAEKNAAPNLSLAGFEVIEEVKAAVERECAGVVSCADIVALAARDSVSYQYRRSLWEVETGRRDGTVSSDQEALADIPAPTSTFPILLANFSAKGLGLQDLVVLSVQGQCRRNQQDPNDNSTVVPMDPGSSVSFDSHYFVNLKARQGMFTSDATLLTDGRAAALVDKLRDPGVFLDHFKNSIKRMGQIGVLTGAAGQIRKRCNAVNS |
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| Function | Peroxidase 56 [UniProtKB/Swiss-Prot:Q9LXG3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0017000 | OsLima_01g0017000.01 | Chr01 | 16060688 | 16064353 | - | NAM | ||
| CDS seq | atgcagggaggcgccaataataagggcttggtatgcttgatcgccgccgccgccgtggtgttggtattcgccggcagcagcggcattgcggcggcgcaggcggccgggctgaagaaggggttctacaagaagagctgccccaaggcggaggagatcgcgcagcgggtggtgtggaaccgcgtcgccggcaacccggagctcgccgccaagttcctccgcatcaacacggcggagaagaacgcggcgccgaacctgtcgctggcggggttcgaggtgatcgaggaggtgaaggcggcggtggagcgggagtgcgccggggtggtgtcgtgcgcggacatcgtggcgctggcggcgcgggactcggtgtcgtaccagtacaggaggagcctgtgggaggtggagaccgggaggcgcgacggcacggtgtccagcgaccaggaggcgctcgccgacatcccggcgcccacctccaccttccccatcctcctcgccaacttctccgccaagggcctcggtctccaggacctcgtcgtcctctcagtgcagggGcagtgcaggcgtaaccagcaggacccaaacgacaactcgacggtggtgccgatggacccgggcagcagcgtgtcgttcgacagccactacttcgtgaacctcaaggcgcggcaggggatgttcacctccgacgccacgctgctcaccgacggccgcgccgccgcgctcgtcgacaagctgcgggaccccggcgtcttcctcgaccacttcaagaactccatcaagcgcatgggtcagatcggcgtgctcaccggcgccgccggccagatcaggaagaggtgcaacgccgtcaactcctag
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| Protein seq | MQGGANNKGLVCLIAAAAVVLVFAGSSGIAAAQAAGLKKGFYKKSCPKAEEIAQRVVWNRVAGNPELAAKFLRINTAEKNAAPNLSLAGFEVIEEVKAAVERECAGVVSCADIVALAARDSVSYQYRRSLWEVETGRRDGTVSSDQEALADIPAPTSTFPILLANFSAKGLGLQDLVVLSVQGQCRRNQQDPNDNSTVVPMDPGSSVSFDSHYFVNLKARQGMFTSDATLLTDGRAAALVDKLRDPGVFLDHFKNSIKRMGQIGVLTGAAGQIRKRCNAVNS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0378100 | RBH | 0.124352 | 0.0 | 0.452205 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g28030 | RBH | 0.000000 | 0.000000 | 0.153018 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0378100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0017700 | RBH | 0.0 | 0.000000 | 48.137424 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0017380 | RBH | 0.098743 | 1.653198 | 1.026203 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0017600 | RBH | 0.0 | 7.704223 | 27.618616 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0016960 | RBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0016970 | RBH | 0.0 | 0.0 | 17.601116 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0264200 | RBH | 5.520634 | 0 | 0.320993 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0017150 | RBH | 0.0 | 0.0 | 0.656093 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0261100 | RBH | 5.2247445 | 0 | 0.219653 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0016970 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0017210 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0016970 | RBH | 0.570052 | 0.0 | 0.178457 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0016840 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G017360 | RBH | 0.0 | 0.779516 | 5.787507 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0017080 | RBH | 0.0 | 0.0 | 1.117718 |
