Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_01g0016960 | OGI:01048910 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr01:16006828-16008664 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gttacatgatgacaaaacccagtaatttaaaagttacagataacacttgaaacatcaccaaatgagagtatgagtctgtatatatactgatgacatgatgacatccagttgatccttcttttttttctgtatgtcttatccatttccaaatgatactgtagcaatctatcgctcatggtctcggagcggcacacgcaaggcagggacaagcaggaggtcggagcgccgccgcgtggtgagccccaacgcctccgtcatgtccagctcgccgggaagcatcccgccgggcagctcccagtcgaagtggtacaggagggcggcgagcgcgagctccatgttggccagcccgaacgccatcccggggcacatccgccgcccggcgccgaacggtatgtactcgaagtccgtccccttgaagtcggcggcgccgccgccctcgaacctctccggcgcgaactcctccggcgagtcccagtgcgccgggtccctgccgatcgcccacgcgttgacgagcaccatcacgccctccggcacgtcgaagcccatcacccggcacggctcccggcactccctcggcagcagcatcgtcaccggcgggtgcagccggagcgactccttgatgaggaggtgcaggtaggggagatcgggcaggctctcctcggtgacgccgtcctgcccggccacggcgagggctcgtcggacctcgtcctgtgccttgcgcatcaccctcgggttcctcatcagctccgacatggtccactgcagcgccgtcgccgccgtctcgctgctcgccacgaacatgtcctgcacaaaaaaagcagaggaaattgaactttttaatcttgattttttttttgttttgcactggggaggtagtagctgatcgagatgagctcggctttacgatgatcacggtcttgatgttgtcgctggtgagagcgggattcgtcttgtcttggctctggatccgcaggaggacatcgagcaggtcctcctcggcgccgccggcggctctgctctggtgatgctcctggaagatggtgtcgatgaaatccatcatctcctggcgctcccgcttcatccggcggggcatccggctgacgagcatcgccgcgcgcgacgacgggaagaggtccggcaagcactgcgccggcagcagcttcatcctctgcggcggcgcggttcttgaacctgctcccgatgacggcgcgcaccgcggagtccgccacgtacgccgaaatccgctcgctcaggttcaccgctgccgtcgcccccggggtcgtcaacgccgccgccgccgccgccgccgccgccgccacggcgcggagcagccggccgacctcctcctcgcgcacggcgcggaaggaccggacgcgtcgcgcgctgaggagctcgagggtgcagatcctgcggagcgtcctccacccgtcgccgtagggcgcgaacacgacgccgacgctgtccgccataaggaccttccccgtcggggtgatgggccgcgtcgcgaaggcgaggtcgtgggtcttggtcacctcgcgcgcggcctccgcggtggaggcgacgacgacgcggagctcgcagaggcggagcagcatgagcgggccgtggcggcgggcgaggtcgcgcatcgcgcggtgcgggagcgcgcccgcgacgtggtggaggtggccgatgacagggagcgcccacggcgacggagggagccggctgcctccgccgcagccatgccggcgcgacgaacgggtcaggcagaggaaggggacggcgacgagcagagcaaggagaagtagatagagaggaagctcggccatggtgatttcccgtcgcaattcgtccg
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| CDS seq | atggccgagcttcctctctatctacttctccttgctctgctcgtcgccgtccccttcctctgcctgacccgttcgtcgcgccggcatggctgcggcggaggcagccggctccctccgtcgccgtgggcgctccctgtcatcggccacctccaccacgtcgcgggcgcgctcccgcaccgcgcgatgcgcgacctcgcccgccgccacggcccgctcatgctgctccgcctctgcgagctccgcgtcgtcgtcgcctccaccgcggaggccgcgcgcgaggtgaccaagacccacgacctcgccttcgcgacgcggcccatcaccccgacggggaaggtccttatggcggacagcgtcggcgtcgtgttcgcgccctacggcgacgggtggaggacgctccgcaggatctgcaccctcgagctcctcagcgcgcgacgcgtccggtccttccgcgccgtgcgcgaggaggaggtcggccggctgctccgcgccgtggcggcggcggcggcggcggcggcggcggcgttgacgaccccgggggcgacggcagcggtgaacctgagcgagcggatttcggcgtacgtggcggactccgcgtgcttgccggacctcttcccgtcgtcgcgcgcggcgatgctcgtcagccggatgccccgccggatgaagcgggagcgccaggagatgatggatttcatcgacaccatcttccaggagcatcaccagagcagagccgccggcggcgccgaggaggacctgctcgatgtcctcctgcggatccagagccaagacaagacgaatcccgctctcaccagcgacaacatcaagaccgtgatcatcgtaaagccgagctcatctcgatcagctactacctccccagacatgttcgtggcgagcagcgagacggcggcgacggcgctgcagtggaccatgtcggagctgatgaggaacccgagggtgatgcgcaaggcacaggacgaggtccgacgagccctcgccgtggccgggcaggacggcgtcaccgaggagagcctgcccgatctcccctacctgcacctcctcatcaaggagtcgctccggctgcacccgccggtgacgatgctgctgccgagggagtgccgggagccgtgccgggtgatgggcttcgacgtgccggagggcgtgatggtgctcgtcaacgcgtgggcgatcggcagggacccggcgcactgggactcgccggaggagttcgcgccggagaggttcgagggcggcggcgccgccgacttcaaggggacggacttcgagtacataccgttcggcgccgggcggcggatgtgccccgggatggcgttcgggctggccaacatggagctcgcgctcgccgccctcctgtaccacttcgactgggagctgcccggcgggatgcttcccggcgagctggacatgacggaggcgttggggctcaccacgcggcggcgctccgacctcctgcttgtccctgccttgcgtgtgccgctccgagaccatgagcgatag
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| Protein seq | MAELPLYLLLLALLVAVPFLCLTRSSRRHGCGGGSRLPPSPWALPVIGHLHHVAGALPHRAMRDLARRHGPLMLLRLCELRVVVASTAEAAREVTKTHDLAFATRPITPTGKVLMADSVGVVFAPYGDGWRTLRRICTLELLSARRVRSFRAVREEEVGRLLRAVAAAAAAAAAALTTPGATAAVNLSERISAYVADSACLPDLFPSSRAAMLVSRMPRRMKRERQEMMDFIDTIFQEHHQSRAAGGAEEDLLDVLLRIQSQDKTNPALTSDNIKTVIIVKPSSSRSATTSPDMFVASSETAATALQWTMSELMRNPRVMRKAQDEVRRALAVAGQDGVTEESLPDLPYLHLLIKESLRLHPPVTMLLPRECREPCRVMGFDVPEGVMVLVNAWAIGRDPAHWDSPEEFAPERFEGGGAADFKGTDFEYIPFGAGRRMCPGMAFGLANMELALAALLYHFDWELPGGMLPGELDMTEALGLTTRRRSDLLLVPALRVPLRDHER |
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| Function | Premnaspirodiene oxygenase [UniProtKB/Swiss-Prot:A6YIH8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0016960 | OsLima_01g0016960.01 | Chr01 | 16006828 | 16008664 | - | NAM | ||
| CDS seq | atggccgagcttcctctctatctacttctccttgctctgctcgtcgccgtccccttcctctgcctgacccgttcgtcgcgccggcatggctgcggcggaggcagccggctccctccgtcgccgtgggcgctccctgtcatcggccacctccaccacgtcgcgggcgcgctcccgcaccgcgcgatgcgcgacctcgcccgccgccacggcccgctcatgctgctccgcctctgcgagctccgcgtcgtcgtcgcctccaccgcggaggccgcgcgcgaggtgaccaagacccacgacctcgccttcgcgacgcggcccatcaccccgacggggaaggtccttatggcggacagcgtcggcgtcgtgttcgcgccctacggcgacgggtggaggacgctccgcaggatctgcaccctcgagctcctcagcgcgcgacgcgtccggtccttccgcgccgtgcgcgaggaggaggtcggccggctgctccgcgccgtggcggcggcggcggcggcggcggcggcggcgttgacgaccccgggggcgacggcagcggtgaacctgagcgagcggatttcggcgtacgtggcggactccgcgtgcttgccggacctcttcccgtcgtcgcgcgcggcgatgctcgtcagccggatgccccgccggatgaagcgggagcgccaggagatgatggatttcatcgacaccatcttccaggagcatcaccagagcagagccgccggcggcgccgaggaggacctgctcgatgtcctcctgcggatccagagccaagacaagacgaatcccgctctcaccagcgacaacatcaagaccgtgatcatcgtaaagccgagctcatctcgatcagctactacctccccagacatgttcgtggcgagcagcgagacggcggcgacggcgctgcagtggaccatgtcggagctgatgaggaacccgagggtgatgcgcaaggcacaggacgaggtccgacgagccctcgccgtggccgggcaggacggcgtcaccgaggagagcctgcccgatctcccctacctgcacctcctcatcaaggagtcgctccggctgcacccgccggtgacgatgctgctgccgagggagtgccgggagccgtgccgggtgatgggcttcgacgtgccggagggcgtgatggtgctcgtcaacgcgtgggcgatcggcagggacccggcgcactgggactcgccggaggagttcgcgccggagaggttcgagggcggcggcgccgccgacttcaaggggacggacttcgagtacataccgttcggcgccgggcggcggatgtgccccgggatggcgttcgggctggccaacatggagctcgcgctcgccgccctcctgtaccacttcgactgggagctgcccggcgggatgcttcccggcgagctggacatgacggaggcgttggggctcaccacgcggcggcgctccgacctcctgcttgtccctgccttgcgtgtgccgctccgagaccatgagcgatag
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| Protein seq | MAELPLYLLLLALLVAVPFLCLTRSSRRHGCGGGSRLPPSPWALPVIGHLHHVAGALPHRAMRDLARRHGPLMLLRLCELRVVVASTAEAAREVTKTHDLAFATRPITPTGKVLMADSVGVVFAPYGDGWRTLRRICTLELLSARRVRSFRAVREEEVGRLLRAVAAAAAAAAAALTTPGATAAVNLSERISAYVADSACLPDLFPSSRAAMLVSRMPRRMKRERQEMMDFIDTIFQEHHQSRAAGGAEEDLLDVLLRIQSQDKTNPALTSDNIKTVIIVKPSSSRSATTSPDMFVASSETAATALQWTMSELMRNPRVMRKAQDEVRRALAVAGQDGVTEESLPDLPYLHLLIKESLRLHPPVTMLLPRECREPCRVMGFDVPEGVMVLVNAWAIGRDPAHWDSPEEFAPERFEGGGAADFKGTDFEYIPFGAGRRMCPGMAFGLANMELALAALLYHFDWELPGGMLPGELDMTEALGLTTRRRSDLLLVPALRVPLRDHER
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.121080 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0377000 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g27890 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0377000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0017660 | RBH | 0.0 | 0.000000 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0017340 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0017560 | RBH | 0.723204 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0016920 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0016940 | RBH | 0.915853 | 0.0 | 2.016807 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0263300 | RBH | 1.3889905 | 6.9989805 | 0.7712595 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0017120 | RBH | 0.139766 | 0.189459 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0259900 | RBH | 2.8961145 | 14.61286 | 0.315988 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0006860 | SBH | 0.018144 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0016940 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0017180 | RBH | 0.0 | 3.349395 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0016940 | RBH | 0.000000 | 0.283861 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0016810 | RBH | 0.000000 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G017320 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0017050 | RBH | 0.000000 | 0.000000 | 0.000000 |
