Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_01g0015410 | OGI:01042250 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr01:14149942-14151126 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgaaccggtcccgcgccttcgcggaggcggtggtgatcatggtgtgcccGgtgctcctcgccgtggccctcaagaaggtcgacctgaagagccaggagcacggccgcgccgccgccgtgccgatcttcatgctcgtcatggcggccttcaccctcgcattcggcaccgtcccctacctcgctctctccttctctaagaggttcagcgaccacaggtggagactccccgccaaggcgaccacctggctggctccctcgtcgtgcgcctgcctcgtcggcctcgcgtgctggatcatacacctcatcctctccgcgcgctgggcttacgcgttccccgccatgggcgccgtgttcggcctctgcatcgtggtccgcaccgtcagctactgctgccgtgcacggggtgacccggctaatctggtagctgccgacgagcgagagctacctatcaccagaactgctttagaggatgccatggaactggaacgcaagctggacgagtcgctggagttgttggccggcgtcacggcgctgctgttcctggcgctggaagggctggcgctggagggccagatcaacggcggccagcgtcgcctcgccgcgcccatgggcgtgtgcttcttcgcctgcctgttcggcgtctgcttcatgctcgtcgagaccatcccgccgcccacgccgagcaggaacgacacgggatgccgcgccagcatcgtgaggaatctcgccgagatctgcgacgccttcatggcccttgccatcggtgcggtcatgctgtcgatcatgatcgtgctcgtgaagctactggcgctgctgctgctatccccgctcttcctgatgctgctggtgcacgcgttcgacgtcgccgtcggccgcgacggcggcagagacggcgacggcgacaatgtgaagccggcgtcgctggaggtgagcaaggtcacgttcaccgggttcctgaccgtggcgatatctgccaggacgaccagccgtggcccgctcagcacgtccaccgagtggttcctcatctttgcagcgtccgccattgtttcgggcttcgcttggaggctcctgacgcacgccaaagttgggaaaagtgccaatgtagcttccttctccacgcatttgtgcatcgtgcttgcaacggtgccatttacagttatggccggacaggctctgttgcactga
More
|
||||||||||
| CDS seq | atgaaccggtcccgcgccttcgcggaggcggtggtgatcatggtgtgcccGgtgctcctcgccgtggccctcaagaaggtcgacctgaagagccaggagcacggccgcgccgccgccgtgccgatcttcatgctcgtcatggcggccttcaccctcgcattcggcaccgtcccctacctcgctctctccttctctaagaggttcagcgaccacaggtggagactccccgccaaggcgaccacctggctggctccctcgtcgtgcgcctgcctcgtcggcctcgcgtgctggatcatacacctcatcctctccgcgcgctgggcttacgcgttccccgccatgggcgccgtgttcggcctctgcatcgtggtccgcaccgtcagctactgctgccgtgcacggggtgacccggctaatctggtagctgccgacgagcgagagctacctatcaccagaactgctttagaggatgccatggaactggaacgcaagctggacgagtcgctggagttgttggccggcgtcacggcgctgctgttcctggcgctggaagggctggcgctggagggccagatcaacggcggccagcgtcgcctcgccgcgcccatgggcgtgtgcttcttcgcctgcctgttcggcgtctgcttcatgctcgtcgagaccatcccgccgcccacgccgagcaggaacgacacgggatgccgcgccagcatcgtgaggaatctcgccgagatctgcgacgccttcatggcccttgccatcggtgcggtcatgctgtcgatcatgatcgtgctcgtgaagctactggcgctgctgctgctatccccgctcttcctgatgctgctggtgcacgcgttcgacgtcgccgtcggccgcgacggcggcagagacggcgacggcgacaatgtgaagccggcgtcgctggaggtgagcaaggtcacgttcaccgggttcctgaccgtggcgatatctgccaggacgaccagccgtggcccgctcagcacgtccaccgagtggttcctcatctttgcagcgtccgccattgtttcgggcttcgcttggaggctcctgacgcacgccaaagttgggaaaagtgccaatgtagcttccttctccacgcatttgtgcatcgtgcttgcaacggtgccatttacagttatggccggacaggctctgttgcactga
More
|
||||||||||
| Protein seq | MNRSRAFAEAVVIMVCPVLLAVALKKVDLKSQEHGRAAAVPIFMLVMAAFTLAFGTVPYLALSFSKRFSDHRWRLPAKATTWLAPSSCACLVGLACWIIHLILSARWAYAFPAMGAVFGLCIVVRTVSYCCRARGDPANLVAADERELPITRTALEDAMELERKLDESLELLAGVTALLFLALEGLALEGQINGGQRRLAAPMGVCFFACLFGVCFMLVETIPPPTPSRNDTGCRASIVRNLAEICDAFMALAIGAVMLSIMIVLVKLLALLLLSPLFLMLLVHAFDVAVGRDGGRDGDGDNVKPASLEVSKVTFTGFLTVAISARTTSRGPLSTSTEWFLIFAASAIVSGFAWRLLTHAKVGKSANVASFSTHLCIVLATVPFTVMAGQALLH |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0015410 | OsLima_01g0015410.01 | Chr01 | 14149942 | 14151126 | + | NAM | ||
| CDS seq | atgaaccggtcccgcgccttcgcggaggcggtggtgatcatggtgtgcccGgtgctcctcgccgtggccctcaagaaggtcgacctgaagagccaggagcacggccgcgccgccgccgtgccgatcttcatgctcgtcatggcggccttcaccctcgcattcggcaccgtcccctacctcgctctctccttctctaagaggttcagcgaccacaggtggagactccccgccaaggcgaccacctggctggctccctcgtcgtgcgcctgcctcgtcggcctcgcgtgctggatcatacacctcatcctctccgcgcgctgggcttacgcgttccccgccatgggcgccgtgttcggcctctgcatcgtggtccgcaccgtcagctactgctgccgtgcacggggtgacccggctaatctggtagctgccgacgagcgagagctacctatcaccagaactgctttagaggatgccatggaactggaacgcaagctggacgagtcgctggagttgttggccggcgtcacggcgctgctgttcctggcgctggaagggctggcgctggagggccagatcaacggcggccagcgtcgcctcgccgcgcccatgggcgtgtgcttcttcgcctgcctgttcggcgtctgcttcatgctcgtcgagaccatcccgccgcccacgccgagcaggaacgacacgggatgccgcgccagcatcgtgaggaatctcgccgagatctgcgacgccttcatggcccttgccatcggtgcggtcatgctgtcgatcatgatcgtgctcgtgaagctactggcgctgctgctgctatccccgctcttcctgatgctgctggtgcacgcgttcgacgtcgccgtcggccgcgacggcggcagagacggcgacggcgacaatgtgaagccggcgtcgctggaggtgagcaaggtcacgttcaccgggttcctgaccgtggcgatatctgccaggacgaccagccgtggcccgctcagcacgtccaccgagtggttcctcatctttgcagcgtccgccattgtttcgggcttcgcttggaggctcctgacgcacgccaaagttgggaaaagtgccaatgtagcttccttctccacgcatttgtgcatcgtgcttgcaacggtgccatttacagttatggccggacaggctctgttgcactga
More
|
|||||||
| Protein seq | MNRSRAFAEAVVIMVCPVLLAVALKKVDLKSQEHGRAAAVPIFMLVMAAFTLAFGTVPYLALSFSKRFSDHRWRLPAKATTWLAPSSCACLVGLACWIIHLILSARWAYAFPAMGAVFGLCIVVRTVSYCCRARGDPANLVAADERELPITRTALEDAMELERKLDESLELLAGVTALLFLALEGLALEGQINGGQRRLAAPMGVCFFACLFGVCFMLVETIPPPTPSRNDTGCRASIVRNLAEICDAFMALAIGAVMLSIMIVLVKLLALLLLSPLFLMLLVHAFDVAVGRDGGRDGDGDNVKPASLEVSKVTFTGFLTVAISARTTSRGPLSTSTEWFLIFAASAIVSGFAWRLLTHAKVGKSANVASFSTHLCIVLATVPFTVMAGQALLH
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0346250 | RBH | 0.166765 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g24420 | RBH | 0.069458 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0346250 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0016050 | RBH | 0.275327 | 8.258671 | 0.328700 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0015670 | RBH | 0.149901 | 0.000000 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0015910 | RBH | 0.736315 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0015370 | RBH | 0.101442 | 0.167814 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0015370 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0232000 | RBH | 0.5916885 | 27.2456265 | 0.0410135 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0015500 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0229100 | RBH | 0.2859555 | 4.0893795 | 0.268693 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0015380 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0015590 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0015460 | RBH | 0.849929 | 0.137199 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0015260 | RBH | 0.724087 | 9.921221 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G015730 | RBH | 0.370823 | 0.000000 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0015500 | RBH | 1.939999 | 1.835250 | 0.0 |
