Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_01g0014830 | OGI:01038530 | 15/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr01:13143026-13146267 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | cagtacgaagcaccaagaaattccagagacctgaattagaagctacacaaagcataaagcaagcctctcatatctttcctcatacagatgatgttctcaaagaggctgttaatcaaacacatcagcagtatgcactaacgactaacatgatggactgtctctcaagtttttgagctgctaaacctaaaccacagatgtcctaaagctacaagcatttaccaacaatcttctccccaagaggattattttctttctagcaccctgcagaggacacaactgaccccagatgagctgctcaactatcgctttgagggtctaccatcatcatcatcatcatcaccatcgtcatcatcatcgtcgtcatcttcatcgtcgccacccgacctcttcctcttcgacgaggattgcgccttcgcggaatcatcatcgccatcatcgtcctcatcaatctcttcatcctcggcaccctcaccgttttcatctggctcgaagtcactggaatgctcctcgtcctctgcatcaccaagtggcttgaccagatactcagttcctagctcctgcagaaatttcatcaaaagcgtgtcatgactgattgaggtgaacgatattcggatattaagatgcatggtgaatctttaagcttaaattgccttcaaggcaaactctaatttgactaaacatgagaatagaaacaactttgggatcagactgacgtgcaaattttcatcattctgaaaataaatccataaaggatatctgagatgaattgttcatcatttcccaaacatgatagattcaataaggtcagtggaagatgagcaatcagggcctacttgtatgacaataccttgggaaacagacctagattcagcaaggttacacaggtacataaacagcaaaagactagatggaatatggattcaatgtccatgctaagcttattttgtcttccgtgataagttctgacccgcaatactttcagaaatagggaataggaatcttcctcagaaagcagtgaaatatcactagatctccaaagaactgcggaggaacaaatcagaccaggttgtcctctcagatctactgagaatgggatcggactgacgtgcaaggtttaatcacaggcagaagagatctaccctcagaaacaacctctggaataagtttttcgtcatatccctaaaataggagctaagcctttcagtagatgctctcaattctcgagcacatattcgaaagcatcagatagcaacgccatcttaatttgaccaaaaaaactaggcagatcttttaagggagaaaatgcaaataaagaaagagaattggatcagaacggcaaatcagttcttttgcagcactgggtgagctcaaggctcatcctcagaaacagcctctgatataaatcatcatctccaaaagaacatgaacaaagcaaaaacaaaatccaaaatccaattactttataggtcaacaaactggtaccactcccccctcagatctaaaataggttctacttgcaaacagcaatctacgaagtggttttggatcagaacggcaaatcagttctttgcagcactgggagagccattggcccgtcctcagaaacagcctctgatacaaatcatcatctccaaaaacaaaatcctaccactaatctttcacagatctagccttccaccataggaaagagcccagatccaggtgtttaacttcccatgagcccataggagaagcaacattaggcgattgtttctagaaggcacggtaaataaagcctaaagcctgaaggaatcacatctaaatcttgatgtgttaagagataaaatctcctcaaaaaaacccaaaccaagaaccatgtgacatgtgacggataaGgggttcttgaagttcatgaacagtggtagacacgtcacacgtccctgtccttgcatcaagaaccaatatccgattatttttaatatatcaaaaaaatatataataatattaacaacaacatatgccaaaatgccctttggacttattattcttggggggaggagatgggcctctgatgggctacaccacagaccacacaaacagcaggtggataagactagactagaaaagtagaaaacctaacatgtcctcataggaaattaccacatcagcgcaaaagtactgggaaaggataaacggtatggcagagaacaatcacccagatctacagaaaatacggaaacagggttttcttctctctttttttttgccaaaaaaactgaacctttttactccaagatctatattttttttgcccaaaaaaggcttctttattcccagatctatagtttcctgagtggtaaaaacaactcacaaaaacaaaaataagttttgcccgtctacagaaatcgatatgcaaaaaaaaaaaaaaaacgacctcagacttgcaaaaatctcgaccttctagaaaggttttttgagaggaaaagtcttcaaaactaagctgatacatctactgatgtgagagaacgctattgtattcaaaactaagcagatacatctactggagtattttagggacaaaggtgctgaacagatctgagaatagaactacttttccagatttgtgcaagagaaaattagcaagaaaacgcgcaggaagctgaagaatttcatactaatcgtaacagtagagcataaagatagatctatcagggcaggcaggaagaacacatgaacaaagcatactagcatatattcgagggatcaaggcgtgaaaaaaaattatacctcctgctcgtcgccctcgacttcctcctcttcctcttcgtcatcgtcgtcgtcgtcgtcatcatcatcgtcgtcgtcatcgtcgtcgccgccatccccctcctcgccgtcctcctcatcctcctcgtcggagatctctacgacggtgtgccccgccgcgcccttctCcccctcctcggcgtcctcctcctcgtcgtccccctcctcctctccatccccctcctcgtcgccgtCGccctcttccccatctaccgcctcctcctcgacctcctcctccccgttcaccacctcttcctcctccaccgccgcctcctccgccttcttggccgccgccgctgcagcagcagcggccttcttccgggcaagctccgccgcccgctcgtccccctcctccacctcgaccgccggcttcatctcaagaagcgaatcaaaaaaaatcaagaagaagaaagaaaTCtctccctttgctttggttt
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| CDS seq | atgaagccggcggtcgaggtggaggagggggacgagcgggcggcggagcttgcccggaagaaggccgctgctgctgcagcggcggcggccaagaaggcggaggaggcggcggtggaggaggaagaggtggtgaacggggaggaggaggtcgaggaggaggcggtagatggggaagagggCGacggcgacgaggagggggatggagaggaggagggggacgacgaggaggaggacgccgaggaggggGagaagggcgcggcggggcacaccgtcgtagagatctccgacgaggaggatgaggaggacggcgaggagggggatggcggcgacgacgatgacgacgacgatgatgatgacgacgacgacgacgatgacgaagaggaagaggaggaagtcgagggcgacgagcaggaggagctaggaactgagtatctggtcaagccacttggtgatgcagaggacgaggagcattccagtgacttcgagccagatgaaaacggtgagggtgccgaggatgaagagattgatgaggacgatgatggcgatgatgattccgcgaaggcgcaatcctcgtcgaagaggaagaggtcgggtggcgacgatgaagatgacgacgatgatgatgacgatggtgatgatgatgatgatgatggtagaccctcaaagcgatag
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| Protein seq | MKPAVEVEEGDERAAELARKKAAAAAAAAAKKAEEAAVEEEEVVNGEEEVEEEAVDGEEGDGDEEGDGEEEGDDEEEDAEEGEKGAAGHTVVEISDEEDEEDGEEGDGGDDDDDDDDDDDDDDDDEEEEEEVEGDEQEELGTEYLVKPLGDAEDEEHSSDFEPDENGEGAEDEEIDEDDDGDDDSAKAQSSSKRKRSGGDDEDDDDDDDDGDDDDDDGRPSKR |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0014830 | OsLima_01g0014830.01 | Chr01 | 13143039 | 13146267 | - | NAM | ||
| CDS seq | atgaagccggcggtcgaggtggaggagggggacgagcgggcggcggagcttgcccggaagaaggccgctgctgctgcagcggcggcggccaagaaggcggaggaggcggcggtggaggaggaagaggtggtgaacggggaggaggaggtcgaggaggaggcggtagatggggaagagggCGacggcgacgaggagggggatggagaggaggagggggacgacgaggaggaggacgccgaggaggggGagaagggcgcggcggggcacaccgtcgtagagatctccgacgaggaggatgaggaggacggcgaggagggggatggcggcgacgacgatgacgacgacgatgatgatgacgacgacgacgacgatgacgaagaggaagaggaggaagtcgagggcgacgagcaggaggagctaggaactgagtatctggtcaagccacttggtgatgcagaggacgaggagcattccagtgacttcgagccagatgaaaacggtgagggtgccgaggatgaagagattgatgaggacgatgatggcgatgatgattccgcgaaggcgcaatcctcgtcgaagaggaagaggtcgggtggcgacgatgaagatgacgacgatgatgatgacgatggtgatgatgatgatgatgatggtagaccctcaaagcgatag
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| Protein seq | MKPAVEVEEGDERAAELARKKAAAAAAAAAKKAEEAAVEEEEVVNGEEEVEEEAVDGEEGDGDEEGDGEEEGDDEEEDAEEGEKGAAGHTVVEISDEEDEEDGEEGDGGDDDDDDDDDDDDDDDDEEEEEEVEGDEQEELGTEYLVKPLGDAEDEEHSSDFEPDENGEGAEDEEIDEDDDGDDDSAKAQSSSKRKRSGGDDEDDDDDDDDGDDDDDDGRPSKR
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0014830 | OsLima_01g0014830.02 | Chr01 | 13143026 | 13143584 | - | IsoSeq | ||
| CDS seq | atgcagaggacgaggagcattccagtgacttcgagccagatgaaaacggtgagggtgccgaggatgaagagattgatgaggacgatgatggcgatgatgattccgcgaaggcgcaatcctcgtcgaagaggaagaggtcgggtggcgacgatgaagatgacgacgatgatgatgacgatggtgatgatgatgatgatgatggtagaccctcaaagcgat
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| Protein seq | MQRTRSIPVTSSQMKTVRVPRMKRLMRTMMAMMIPRRRNPRRRGRGRVATMKMTTMMMTMVMMMMMMVDPQSD |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.880826 | 1.415740 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0332900 | RBH | 13.613731 | 5.585446 | 31.403471 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g22990 | RBH | 8.951241 | 4.779036 | 7.719454 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0332900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0015380 | RBH | 6.852409 | 35.627201 | 32.880482 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0015150 | RBH | 2.399736 | 16.238167 | 8.719366 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0015400 | RBH | 14.678436 | 43.383102 | 28.177279 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0014880 | RBH | 1.946143 | 2.112986 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0014930 | RBH | 31.429628 | 69.269333 | 71.913994 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0213700 | SBH | 26.5914115 | 3.8716875 | 3.137387 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0014830 | RBH | 3.519516 | 4.414860 | 6.277872 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0209900 | RBH | 13.2485425 | 18.906224 | 20.90339 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0014740 | RBH | 3.470190 | 55.590637 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0014830 | RBH | 24.431456 | 61.769398 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0014940 | RBH | 7.538582 | 7.106738 | 7.422361 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0014650 | RBH | 5.438948 | 34.281479 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G015040 | RBH | 6.022418 | 17.278244 | 12.451221 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0014850 | RBH | 13.738551 | 38.102985 | 35.961311 |
