Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_01g0014560 | OGI:01037710 | 15/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr01:12870169-12876011 | ||||||||
| Gene Symbol | prx16, OsPOD1, POD1 | ||||||||||
| DNA seq | gcagcaagcagctagctatagctaagctctgagctccatggccatgaagtgcttcctcttcttcgccttcctcgtggccttcttccccggcgccgccgtcggcgccgggctgaaggtcgggttctacaacaagacgtgcccgtcggcggagcgcctggtgcagcaggcggtggccgccgcgttcaagaacaacagcggcgtcgcccccggcctcatccggctgcacttccatgactgttttgtcagagtacgtgttcatccagatcatgatcttaatttagttttgctTAtacctgcactgttttgtgcaagaacacagctaattaacctcttggttaattaattgatttgttttttctttgtacaaaaactttctttttgaaacgttataaaagaaatacaaggtgtcaatttttcaaattatacacttgggagagttagctgggatatattttatgactaaatgttgtaaaagttcggcatatcactgtttaaaaatcagatcactgtagttcgcaaaatcatgttgctctataatgtgtgctgcagtcaaactatggttgttaacgtttttaaTtttttttctcgcaaaaaagaatatagcaattaatttggttcctcaaaaaagatatattaatttggaccacatagattgtctaaaatacgtgtggtttggattatggagaagaccacatatattttgttacaattttaattataacagtttttggattatgatagtatatataaaattcagttcgacagtagtagcatttctgttgacttggaaaagtcacagacgactccatttaccagagatagtactgtcccaatgctaggttacttcactttttgacttttgcgctcttcacaaatgattttgatcactttttgtaatttacatcaaagtataataatagaattataacactgtggaagtatttataacaaaaaaaacaatgaaatattttcttcagaagacaaatatatagagttccaaacgtattagtggccaaattttaaaacaaaagttgataccgttgattcttaattgtggctaataatgataaaataagaacttgggaaatgagtctgggttaatccatggattatggaaaaaaaaagaacacgtccttcataccatggggtgccccaaccaaaaatgatagagcttatatatagtttgaaaattgaaacattggaaacttatttctaatataatatgtctctttcagcaaaggtagaacaatagcatattgaaaagggcatgtcatcaatatatcgtcactttcagttaactgcaatctgcatacaaattaatcacatgcatctagttctttttatacctgcataattgactagatcgtgccgacaacttaagaagaaaaagagctctcaggaagtagatttttttttcgagtacaagtcttactcgtgcatctgactacatgggaggcctaacctcacgtaagagtaaatttaagaagattatccgtgctaaattttacgacttaaataggatgatccaccgccatatatatgacgataataaacctaatcaactctcattcgtctcaagaggttgactaattttacccctcatctctcctaacttatactacaggcatctataactctcaatatttttcaggaaccgaattaagAAaaagtcattttagacagaagcacatttattatatactgttagtcctggacaggtgggtaaaagacctgtgctggttttgaccagagattaattggtacagcaGctccttcTtactaaacatatgtagctggattactggaAAGTCCagtgtcttatcagAaaaTaatttagctacTTttagctaaatacatcaagacagattggtgcaggaaataatatgcagagttggactaaagacccggccagccttcctggatttttcacattttggtccttttgaaaaacttatttcgcaaatagacccctgaaaaaacttatcccagaaatggtcctttttggggcgccagagtggctggcgccgtcatccaacgggacggcgccagcctctctggcgccgtcctcctgccaccgtagcgcacgcgaaccgacgtggcaggaggagggcgccagccatgctggcgccgccccagggaggagggcgccagcatggctggcgccgccgcctctgttcctgtttctctgtatggagttgcaacggtgttatttttattttatttttttgatgttttttcacactcaggatcacgatacaaccaaccacaaaaaaaatttaaactcgaactaccacttagctaagtctgaaaatatctagcataccacttagtctactttgcaccttcactaaaattagaccataactcttttagtaaaactctttgatcagcatgttaaacataatgcactttaccactatatgaaattacttaatctaattcaaaatataaccacatgaaatgacatatataagttaaacagtacatagagatgtaatttttttatttttatttcacttttttgatatttttttcacacttaggagaacataggaactaaccgtataaaaaataaactcaaacggacaaaatatgtgacatgtagaattttcaaaaactctaccgaaacggacaaaatatgtcatctattaaaataggcgtaactttctcatacggactcggaatcaggcaaataatatattcacggacatctacagaaaaagttacatccgattctccccaactttgccgggttcggcgatattaaaacctccaaattccgcttgcaagattgtgttttcgaggagagaagtttttcggtggagctttagaaaattccacatgccacatatttcgtccgtttgagtttattttttacatggttggtttctgtgagttcctaagtgtgaagaaaatatcaaaaaaataaaataaaaataaaaaagttgcacatctctctcctctgcactagttcggagagaggagaggagaggaaaaattctacatgtcacatattacgtccatttgagttcaatttttctatggctggttcttgtgtgtccctaagcgtgaaaaaaaatatcaaacaaataaaacaaaaataaaaaatttcgggggggcgccagccactctggcgcactccccctagccacctcagcatcgccccgccacgtcggcagggggacggcgccaaagaggctggcgccgtcctgttgaacgacggcgccagccactctggcgccccaaaaaggaccaTttttggaataagtttttctaggggtctacttgcgaaataagtttttcaaaaagaccaaaatgtgaaaaatccaggccagccttctctcccaaacttctttttttagactcttcacccaaactgtcggcaaacaaatcaaatttggcgttggggcgtccatgtacacacactacacatgttccgctcattcttgattagtacaattaattacactggttacttgatggcaacatttttagcatcagggtacggtcatgaacaggctgagcagatggcaacgtgccaacatcaaccagtttgttttttttaagaaaaaagagtcacgtaaataggttcttagcagatacactcctagcaacgtgacaacattaattaccacagctgaatttacttatggatactttgcatttctccaagattcatgctactactagaaatcctgaaaatattttgcatcttaatcattttgaaaaTtttatttacaaagatagagtgctataaaaaattattctaaaaataaaccatttttgggtatcgaggtcgtatgattcagcgccaataacactagtgctgaccccctctcccttgccacccctgcaatgctggtagcgaaaatttcagactagaaatacctacatttcttgggataaaatgttctatgggaaaacatgggaaaacatggggaaaaaaagatgccataaaactcttaatccactactatattacggcataatttaaccatagagaacccgatgatttataataatgtgcctaggaactaaagggtcattaattactttaatttgttcaatgggatatatataggaagttgtcatagcactaaaatcattcaaacgtcgttattctaaacgagacaaaattaaccagttgttcacatcccaccccggcccagcggcccctctcatctcacttggttccttttctctctagccacccacgctatacctatcatatacacatgtcatcttcctacacctcacttggccttggtccatcccttccattgtgatctcttttcccatcacgtctcaccctttgcgtccccccaaatcgcacccactcaccctttctcctttgctcatcccgactcgtaggggtgggcttagaatttgagattgtgtatttaaaaatgtgaaggggtagaaaaaaattgatttaagctaatgaaatctaagctatgccaaaagaaacaagaaatatagaagcatatatcaactgtaaaagaattctgaagtgccaatgaataaataagttcatccgtttctacaactgggagaaatttaaactgtggtaaagagttcaaggaccgagataatttctcaaggaaatggtaaagagaaacatgaaaaataaagatcgtggatcctaatatagatttttcaaattcatgaatctaagtgagatacctcgctccaactttaatgaccggccgtgtagtttactcattaaaaaaacgaaagggagagaattctcaatttttgctcaatgtctgcagggctgcgacgcctcggTtttgatcgacgggaacgacaccgagaagaccgcgccaccaaacaaccccagcctccggggattcgaggtgatcgacgccgccaaggccgccgtcgaggcggcgtgcccgcgcgtcgtctcctgcgccgacatcctcgccttcgccgcccgcgactccgtcgcgctcaccggcaacgtcacctataaggtccccgccggccgccgcgacggcaacgtctccatcgcccaggacgcgctcgacaacctgccccctcccaccttcaacgccacggagctcgtcggccgcttcgccaacaagtcgctcaccgccgaggacatggtggtgctctccggcgcccacaccatcggcgtctcccactgcgactccttcaccccgcgcctctacaacttcaccggcgtcggcgacgccgaCccggcgatcagccccgcctacgcgttcctcctccgcgccgtgtgcccctccaacagcagccagttcttccccaacacgacggtggacatggacgtgatcaccccggcggcgctcgacaacaagtactacgtcggggtcaccaacaacctgggcctcttcacgtcggaccacgcgctgctcaccaacgccacgctgagggcgtcggtggacgagttcgtcaagagcgagacgcggtggaagagcaagttcgtgaaggccatggtgaagatgggcggcatcgaggtgaagaccgggacgacgcagggcgaggtcaggctcaactgcagggtcgtcaacaagaggagcgccaacgctgagctcgagctcgccgccatggatgatggggatcaagtggcagcgagctaattaaggtagtagctgatgtggtgttcttcagagatttcagcaataagtttgtgatcgatcggtgttgctagctgctgcttttcgcgagaataagagttgctggagaggaagttttttcttcttgTtgtTGtttaatttgttttctgttttggattgtgtttcagtgtttgggcgagtgttttggtgcgAacctgtcatgaatcaaggaaaaaatttggcgaaatgttgacgaattgc
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| CDS seq | atggccatgaagtgcttcctcttcttcgccttcctcgtggccttcttccccggcgccgccgtcggcgccgggctgaaggtcgggttctacaacaagacgtgcccgtcggcggagcgcctggtgcagcaggcggtggccgccgcgttcaagaacaacagcggcgtcgcccccggcctcatccggctgcacttccatgactgttttgtcagagtacgtgttcatccagatcatgatcttaatttagttttgctTAtacctgcactgttttgtgcaagaacacagctaattaacctcttggttaattaa |
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| Protein seq | MAMKCFLFFAFLVAFFPGAAVGAGLKVGFYNKTCPSAERLVQQAVAAAFKNNSGVAPGLIRLHFHDCFVRVRVHPDHDLNLVLLIPALFCARTQLINLLVN |
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| Function | Peroxidase 56 [UniProtKB/Swiss-Prot:Q9LXG3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0014560 | OsLima_01g0014560.01 | Chr01 | 12870206 | 12870511 | + | NAM | ||
| CDS seq | atggccatgaagtgcttcctcttcttcgccttcctcgtggccttcttccccggcgccgccgtcggcgccgggctgaaggtcgggttctacaacaagacgtgcccgtcggcggagcgcctggtgcagcaggcggtggccgccgcgttcaagaacaacagcggcgtcgcccccggcctcatccggctgcacttccatgactgttttgtcagagtacgtgttcatccagatcatgatcttaatttagttttgctTAtacctgcactgttttgtgcaagaacacagctaattaacctcttggttaattaa
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| Protein seq | MAMKCFLFFAFLVAFFPGAAVGAGLKVGFYNKTCPSAERLVQQAVAAAFKNNSGVAPGLIRLHFHDCFVRVRVHPDHDLNLVLLIPALFCARTQLINLLVN |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0014560 | OsLima_01g0014560.02 | Chr01 | 12870169 | 12876011 | + | IsoSeq | ||
| CDS seq | atgtggtgttcttcagagatttcagcaataagt |
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| Protein seq | MWCSSEISAIS |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.125712 | 0.468279 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0327400 | RBH | 0.640626 | 1.401225 | 0.626892 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g22370 | RBH | 0.419239 | 0.912017 | 0.156165 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0327400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0015050 | RBH | 0.130945 | 84.552040 | 6.001804 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0014840 | RBH | 0.283379 | 14.749131 | 0.449758 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0015080 | RBH | 0.0 | 77.591179 | 3.409097 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0014550 | RBH | 0.0 | 1.187585 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0014620 | RBH | 2.719704 | 26.263002 | 4.765385 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0209100 | RBH | 10.5575075 | 15.798923 | 4.188739 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0014540 | RBH | 0.0 | 3.955011 | 0.616225 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0205500 | RBH | 13.9632175 | 13.091179 | 2.7764865 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0013000 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0014550 | RBH | 0.0 | 43.170780 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0014660 | RBH | 0.855242 | 7.868025 | 1.633503 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0014370 | RBH | 0.0 | 60.026310 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G014730 | RBH | 0.0 | 5.554276 | 2.258202 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0014530 | RBH | 0.0 | 81.988998 | 3.623499 |
