Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_01g0014390 | OGI:01037040 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr01:12646501-12649628 | ||||||||
| Gene Symbol | RLCK33, OsPti1b, OsRLCK33 | ||||||||||
| DNA seq | tcataatccggatcgctcgccggcgtcggtgaaggaGgcggggcgattgttcgggcggctgttgaggagtgggttcagagccttgacgacgatgctcatgttgggcctgaagtccgcctcgtactgcacgcacagcgcagctacggcagccatctgtttaagttgccaaaaccatcaagctggtaagaatcatggcatacgtgatttcgggctaccactgtgcctaatggcagaggctaaaccatttccatTAtatatatatataaaatccaggctgccacttggttatttgagatgtaaactctttgttgttataatgtactagtagttcagatgtatatataggacagaaaatgcttgatatgctctcctaattcaagatgaaaatgttttgtgttcttagaaaaaaaaaggtaataattgtagtttccattgtactttcccgcaaaaaaaagctgtgcaatttgataaagaaaaatgtctctagtatgttctgtttagtatattaactggaacatggtcatgtttaaaatctggtgcaacctaatcagtatgcattgaaatttgtgttacttgatagggacagaaaccatctggaacacaagttatttttaccttggcaacagccttgggaggataatccccttcaagccttggatccacgcattgcttcaccttgtcttcacttagccttggagtagcctgcaatattgtcaatacagtccacagtacatgagttgtttgttcatcttgtcaagagccaagacaaagttttcatggatgatggaaagatcagtacccatgtcacaagactctgctggccacggggcagcgtatgatcgaccggtttgcgaccagttaaaagctccagcaacacgactccgaagctatagacatcgctcttcgtgctaagctgccctgtcatcgcgtacctggcagattccaaaatagaacagtaagtacagtcgtataagagcacatttcatcctaaaaattgcctacttgatgagtaacagatcaagaacatgaaatgtttgggtgcatactcaggagcatgataaccgaaggtgccaagaacacgagtggagtggaggcgagccgccatgtccggggactgattggatacatcgaagtctcctactttcgcaacatcgttgtcaaagagcataatgttgctggatttgatgtcacggtggacgacacgaggctccgccttctcgtgcaggaactcaagCccctttgcagcactcaaggcaatcttcactcgctgcatccatgatagagctggtcctggctgagctcccttcacaccctttttacctgtgatcatgatccagatatgcatcagccatgcattaataatgtacgagccaatcaatataaatgctaatagtacatcataaattgccaatcaatctattttgtttggttacattattcataccaatgaggacaatgtaaatgctaatttgaatccttctggtctaataccatttacagtattcggatagcatctcttcatgagtgcgacaaactaagagtaatatcaaaataaagaaaggttatatattcctcaccatggagaatgtcatgcaaggagcccctcggtgcatactcataagcaagaacacggatgctccctccagcgcaatatccgataagttggataatattctcatgcttcagtcgtgaaacggctgaaacctgaaaaagaaaaatgtaggtgagacgaagctagtccgttgcatcatatatacattgacaagatatagtcatatagaatgaaagaaaagagtgtcagaacctgcacaaggaattcttgatcaggctgtttgctggagtcgagcttcttcaccgcagatctcctgccatctctcagcacaccaaagaaaactctggcgtacgagccttctccgatgagagcatcactgctgaagttcttggttattccctttatttcatcaaggggaattgccggtactgcaattggcagatttctgctggtggggggagaacgagaaggggctgggggCccgggcttgctacgtccatagttactacctgcgtgtggaacatttttaatgaaatcacatcattctatgctggcatttctgtcttttcagtttcagtagatgtaagaactttgtagcaagttacatttctggtaatagaaatgggggctccttgccctttgctaccAaaaaaaaaaaatgctaagctgaaaaactcctggctttcagcgatgctgatttatgcaatgagacatGttttaacttttttttcaaggttaaatttatttatttatccattcctgtgtagttttagattgtattgagttgaactatacctcaaaacttgattctcatgtgctgagaaatagtctgatgaaaaaataacacatatttccagtcgacaaacttggaatacaaattttttagaggtaatggcagttttgtattgactatatcgatttgaaaggatacaatataaaaagataaaaaaggaattgaccattccctttgaaagagagacAAaaaaaatgaaatgatgataagggatttctgataaagaaaACacagatcatataatctaaaacagggttggcaacaagctgtttgtttgtattgatgaattttAtttgcatgcaagtgcaactttttcaaggcaactaattaaataatgtctgacatatttgtttaccaattcattcaactagctatttgggcactcctcctccatctggcattatttactattacccctatctattgaagaaacacaagggaatgcaagcaatacccaagtgcaatgtaacagaattatctaaacacattatcacgcatactttttttattggataaaagaggacagtatcccttttgcaaagttcaaccaacaaacagtgcctgctaacatcaaaattttgcatcaaatctggaagcaatagtttgttcgatcaagcatgaattcactgcttccatcgatttgcaaccatgatcaaacaacacggaggtgaaaagcaaagagagagaggattagcaacctggatcagggatcgggacgtaaggatcgtcgcgcttcttcttcttgccgacatcatccgctccgcagcatgaaaagcaacccat
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| CDS seq | atgggttgcttttcatgctgcggagcggatgatgtcggcaagaagaagaagcgcgacgatccttacgtcccgatccctgatccaggtagtaactatggacgtagcaagcccggGcccccagccccttctcgttctccccccaccagcagaaatctgccaattgcagtaccggcaattccccttgatgaaataaagggaataaccaagaacttcagcagtgatgctctcatcggagaaggctcgtacgccagagttttctttggtgtgctgagagatggcaggagatctgcggtgaagaagctcgactccagcaaacagcctgatcaagaattccttgtgcaggtttcagccgtttcacgactgaagcatgagaatattatccaacttatcggatattgcgctggagggagcatccgtgttcttgcttatgagtatgcaccgaggggctccttgcatgacattctccatgggcagcttagcacgaagagcgatgtctatagcttcggagtcgtgttgctggagcttttaactggtcgcaaaccggtcgatcatacgctgccccgtggccagcagagtcttgtgacatgggctactccaaggctaagtgaagacaaggtgaagcaatgcgtggatccaaggcttgaaggggattatcctcccaaggctgttgccaagatggctgccgtagctgcgctgtgcgtgcagtacgaggcggacttcaggcccaacatgagcatcgtcgtcaaggctctgaacccactcctcaacagccgcccgaacaatcgccccgcCtccttcaccgacgccggcgagcgatccggattatga
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| Protein seq | MGCFSCCGADDVGKKKKRDDPYVPIPDPGSNYGRSKPGPPAPSRSPPTSRNLPIAVPAIPLDEIKGITKNFSSDALIGEGSYARVFFGVLRDGRRSAVKKLDSSKQPDQEFLVQVSAVSRLKHENIIQLIGYCAGGSIRVLAYEYAPRGSLHDILHGQLSTKSDVYSFGVVLLELLTGRKPVDHTLPRGQQSLVTWATPRLSEDKVKQCVDPRLEGDYPPKAVAKMAAVAALCVQYEADFRPNMSIVVKALNPLLNSRPNNRPASFTDAGERSGL |
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| Function | Pto-interacting protein 1 [UniProtKB/Swiss-Prot:Q41328] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0014390 | OsLima_01g0014390.01 | Chr01 | 12646501 | 12649628 | - | NAM | ||
| CDS seq | atgggttgcttttcatgctgcggagcggatgatgtcggcaagaagaagaagcgcgacgatccttacgtcccgatccctgatccaggtagtaactatggacgtagcaagcccggGcccccagccccttctcgttctccccccaccagcagaaatctgccaattgcagtaccggcaattccccttgatgaaataaagggaataaccaagaacttcagcagtgatgctctcatcggagaaggctcgtacgccagagttttctttggtgtgctgagagatggcaggagatctgcggtgaagaagctcgactccagcaaacagcctgatcaagaattccttgtgcaggtttcagccgtttcacgactgaagcatgagaatattatccaacttatcggatattgcgctggagggagcatccgtgttcttgcttatgagtatgcaccgaggggctccttgcatgacattctccatgggcagcttagcacgaagagcgatgtctatagcttcggagtcgtgttgctggagcttttaactggtcgcaaaccggtcgatcatacgctgccccgtggccagcagagtcttgtgacatgggctactccaaggctaagtgaagacaaggtgaagcaatgcgtggatccaaggcttgaaggggattatcctcccaaggctgttgccaagatggctgccgtagctgcgctgtgcgtgcagtacgaggcggacttcaggcccaacatgagcatcgtcgtcaaggctctgaacccactcctcaacagccgcccgaacaatcgccccgcCtccttcaccgacgccggcgagcgatccggattatga
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| Protein seq | MGCFSCCGADDVGKKKKRDDPYVPIPDPGSNYGRSKPGPPAPSRSPPTSRNLPIAVPAIPLDEIKGITKNFSSDALIGEGSYARVFFGVLRDGRRSAVKKLDSSKQPDQEFLVQVSAVSRLKHENIIQLIGYCAGGSIRVLAYEYAPRGSLHDILHGQLSTKSDVYSFGVVLLELLTGRKPVDHTLPRGQQSLVTWATPRLSEDKVKQCVDPRLEGDYPPKAVAKMAAVAALCVQYEADFRPNMSIVVKALNPLLNSRPNNRPASFTDAGERSGL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0323100 | RBH | 0.0 | 0.135220 | 72.688263 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g21970 | RBH | 0.0 | 0.090846 | 18.690706 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0323100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0014870 | RBH | 0.000000 | 18.945795 | 27.020660 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0014680 | RBH | 0.000000 | 0.000000 | 62.318153 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0014920 | RBH | 0.0 | 6.754568 | 134.776184 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0014370 | RBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0014450 | RBH | 0.0 | 0.000000 | 91.207031 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0205300 | RBH | 0.461822 | 1.53592 | 4.0610855 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0014370 | RBH | 0.0 | 0.155227 | 59.888515 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0202000 | RBH | 0.813879 | 0.3662575 | 8.333996 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0014380 | RBH | 0.065892 | 0.656275 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0014430 | RBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0014420 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0014520 | RBH | 0.114750 | 0.0 | 12.553625 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0014230 | RBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G014550 | RBH | 0.0 | 0.000000 | 19.508907 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0014360 | RBH | 0.0 | 0.000000 | 193.632477 |
