Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_01g0013000 | OGI:01032820 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr01:11003985-11005810 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | acagcatgccaaatacactatttatttgacacaccagcaggcatattaatcgtacgatgaagacaatggcacaaggactaaaacagccatacatgtttctggattcaatagccaatcgaacttgagtcttcagaccagcataagagaaattgcaatctttgtgttgtcgcatcgaaacctggaagttcacaaaaggagaaggaaagcaaacatcatgttgacctaccagtcacgataggtggataacacaacatatctacccagtggacattacaaatttacaatagaaaaaagtggaagtgcaaaagttcacaacagaaactagtcgtgctctagaactaaatccacaaaaataaagagaaaaacgtaaaatccctaacaaatgaacagtaaacaacattccatcgtttgagctaaagaaatctactattgcttggcggtgaactggtaaaggaacttatgcttcatcagttgagaatgtcatcttcataactcagaaataaaaaccaaggcgatacctggaaactaatgcctgtgcctccatatgatgaactccaacaataggcaggtgaaatgattttgctatttttcgagctttgtgaacaccaactgcaatttatatggttcgttaaatagcctttaaagaaatgtaagagagactcagcaaggttAaaaagtaaattcaataaagttcactctgactgtgtaaatagtagtatatgcaatgtatcatttcaacagtcgattattttacaggttgacattgcgagtgactgcacaagataaagaactactaacaagtaacaccatctaaagggcaaacaagttagtgatgaaaaatgcactgcacctaaaataagcgaactaatagagagaacacggggttttggttgtggggaatgattgaaagatgcaaacaagattctgtaacaaactgaaaattcagaaccatgccagcatataagacataacagtaaataccagataatcctattgatcaggagtaaacatacaaaagcatcaaatacctctgaggcataaactaagtcctggtcctacggtgacagccactgcagaaagatcactttctgacacatttgcatcatcaagtgctttctggacaacctgcaaggaaagtacaaaaagttagcaactctttaacataaatgtaaaaaacagcaagatccgcacaacttctgaacagaaactctgaaactgaaagccaaacccgatcaatcgcaagcaaatgagcttcctcagccatcttcggagcgacgcctccccacctcacgagtaaatcttccttccaaatgttgtaagcacaaagcaatactatcagcagcgcacagaatataacatgacaaatatacagaaatgaagtgtgctggacagggaggtggggggcatagtgtctcacttgggaagataccacctggcttaggatctcgccatcgcctctaacctgcaaccaacaaaggcaacagagagccaaggcactaagaacaaatcctagacatggctccaccacagctacaagcggtctgccatgggggaaagggaggggggggggggaatgagccgcgcgtaccacggcggcggcggtgtcgtcgcagctggtctcgatgccgagcatgaggaggttgccgtgatcgggggtggcccgtgaaccggcggcggagggcattgtggagagggagcggaaggtaggagaccgtaccggcggggagggggcGggggcgaggaggcgtcggaggaggagaccggcggcgataaggtggggaaaagagtggccgccattccaccgtggctcggctttgcactctctc
More
|
||||||||||
| CDS seq | atgccctccgccgccggttcacgggccacccccgatcacggcaacctcctcatgctcggcatcgagaccagctgcgacgacaccgccgccgccgtggttagaggcgatggcgagatcctaagccaggtggtatcttcccaagaagatttactcgtgaggtggggaggcgtcgctccgaagatggctgaggaagctcatttgcttgcgattgatcgggttgtccagaaagcacttgatgatgcaaatgtgtcagaaagtgatctttctgcagtggctgtcaccgtaggaccaggacttagtttatgcctcagagttggtgttcacaaagctcgaaaaatagcaaaatcatttcacctgcctattgttggagttcatcatatggaggcacaggcattagtttccaggtttcgatgcgacaacacaaagattgcaatttctcttatgctggtctga
More
|
||||||||||
| Protein seq | MPSAAGSRATPDHGNLLMLGIETSCDDTAAAVVRGDGEILSQVVSSQEDLLVRWGGVAPKMAEEAHLLAIDRVVQKALDDANVSESDLSAVAVTVGPGLSLCLRVGVHKARKIAKSFHLPIVGVHHMEAQALVSRFRCDNTKIAISLMLV |
||||||||||
| Function | Probable tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial [UniProtKB/Swiss-Prot:O22145] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0013000 | OsLima_01g0013000.01 | Chr01 | 11003985 | 11005810 | - | NAM | ||
| CDS seq | atgccctccgccgccggttcacgggccacccccgatcacggcaacctcctcatgctcggcatcgagaccagctgcgacgacaccgccgccgccgtggttagaggcgatggcgagatcctaagccaggtggtatcttcccaagaagatttactcgtgaggtggggaggcgtcgctccgaagatggctgaggaagctcatttgcttgcgattgatcgggttgtccagaaagcacttgatgatgcaaatgtgtcagaaagtgatctttctgcagtggctgtcaccgtaggaccaggacttagtttatgcctcagagttggtgttcacaaagctcgaaaaatagcaaaatcatttcacctgcctattgttggagttcatcatatggaggcacaggcattagtttccaggtttcgatgcgacaacacaaagattgcaatttctcttatgctggtctga
More
|
|||||||
| Protein seq | MPSAAGSRATPDHGNLLMLGIETSCDDTAAAVVRGDGEILSQVVSSQEDLLVRWGGVAPKMAEEAHLLAIDRVVQKALDDANVSESDLSAVAVTVGPGLSLCLRVGVHKARKIAKSFHLPIVGVHHMEAQALVSRFRCDNTKIAISLMLV |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.279846 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0295900 | RBH | 3.456659 | 3.507011 | 0.729366 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g19140 | RBH | 2.092018 | 2.433977 | 0.208519 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0295900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0013490 | RBH | 0.460764 | 2.442434 | 1.386037 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0013250 | RBH | 0.386720 | 0.0 | 0.436265 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0013510 | RBH | 1.255439 | 0.0 | 6.103605 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0012960 | RBH | 0.239731 | 0.042221 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0013070 | RBH | 3.319249 | 0.000000 | 5.627805 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0179500 | RBH | 2.503313 | 1.841206 | 1.1668685 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0013010 | RBH | 0.436363 | 0.103326 | 0.125547 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0013100 | RBH | 0.533844 | 0.196965 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0013100 | RBH | 0.384445 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0013060 | RBH | 1.377518 | 6.784429 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0013160 | RBH | 0.899552 | 0.000000 | 0.320616 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0012850 | RBH | 0.361390 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G013150 | RBH | 0.582048 | 0.376949 | 0.127809 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0012920 | RBH | 2.684616 | 0.000000 | 1.347238 |
