Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_01g0011790 | OGI:01029540 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr01:9765318-9775002 | ||||||||
| Gene Symbol | AGO4A, OsAGO4a, AGO4-2 | ||||||||||
| DNA seq | taagggcagcaaagcagagcatggaacaagctgcgattaagatggacaggttcagtagttatcctaacaggttcagaagtgcggcatccagcctaataacatccaccccccagctggtacttaaacaaacacgacataaacaagactaccaaaacatccacaagttcaggccataacatagcagccaagcggctgctcagcagaagaacatggagctcctgactttgttatgcaggcgaggcagctcgagcaccggagcgctgcccgccgaggtatggccaccatggctcgacgacgtctccgacatctcgtcgaacttgatgaactggctgacctgagcagcagcgagatgcgcgtagcaaatgggtgcaactgcaaggaaacaagataaagatgaataaataaacactggcatgcaagttcgaagcaaacatcaatcactaaaccaggtattgcccacttaccgactgatatggctgtagtgctcctctggtagctgaaagggtacaaacaagcatttggatgtcagaacaagtctgtttccaagaagtgaaaaaaggaatcatggcatatatcaaacttacacataggaaagggagtggaccaactcctgaagatcgtcagcagagaagcctatctcatcatgaaggatatgataatgtgtaggccttgtagttccctaatacagcacaggcacaaccaccatcaattcaagtaggaccaaaaaaaagggactggcaaaaggagtgaaacttcatacagagaacacacAaaaaaaaaactaaagaaatttctgatattaggctataaagaaattcacataataatactacagctggccaagatggttttatagcataattaaaacaagttgcataaagcacccaagataaatgaattaattcatccaacataaatcagaagttgcacattagttaggttaccagctgtagcaatgcattcctgatcaaccgtcaatagttactgattcaattcatcaatgacacgtacaaacatttatgtacaaagagtacaaagcttggcctgatgggatcatggtaagtatcaatctagatcacttttgaaggataaaaaactcagggcacagcctacaagtgccatgtatcaataacttaattttaatatgaaagacttgcctaaacaatcgaccttgaaagtggaatattatacgtgacccaattaaagccaaccccgataaaatacaccaagacgatacttacaatcattccagcgtgcgcacacatgtagaagtcattgttccttggatgacagactgcgttgtccacaacagtacctaaaagttacatcattcaaatcattagatattagattaaggatgtacaattgccagttttgacacaacatatcgaacaatgggattaccaggaggaacgttattttgagatccaggcacaaaaaatttggtatgatgattcttctgtgcaacaatcagtgtaaactttggagaccagttttcgtcaagaaacttgcatgcctgcaacaatttaaggatacaaaagtgattgtgcagctgatgatagtaatgatacttgcagtcttgcatacaaaataaaaaagaactaaaaacaatagaacagaaagttataatgaacaatacctcaattatttgatccagctcaatgttcagcacctgggtaaactggctctcactgaccccatccctatatttaaagcaccaaataagtgaaaaaaattaaacggttacacaaagaaccagttaagtcaaagcacaaagtaatcattgtccataatttaagttttgcttttacaatcctgcattcaggtatttcactgaagcttattaatggcatttacgagaagctttcaaagagtaactgacctgaagataatgacttgatcaggcttacgtttaccagtactggtatagaagtcaacTAATAactccctgaaataatttccagcacaaatggcagaagatatcattagcactggcagaatttaatgaacaatggaacatgccacaaagttataaggattgcatcacggtccaaataaaattgcttaccgaatgaggccatcatcttcctgagctccttgtggcttaaatagtccatcaatcatttctaacttaggtgactgagaacggactgaagccctgtattttgatacaagaggccattcacgagaactaacgacctaaaaaaaggttaacgattaagaattaaggaccggtaagagcaagaataatagtggactataagcccactataagcttatgtggagaaagacacagaaaaattatgtgttggctctaatgaaagagctagttctccacatgctccaagatagatgtattaaatatacaagtgagagagaggagaaaaaaggcaaccttatagctaatctattataaatattagccaagatgggtttatacttattaacttgtagttagctctctaagctctaaactatcaaacttgctctaatgattaagtatagtaaagctttttgtttctggtacagtgcagaaaattagaaaagtttacttaccgcagcaattgaaggtatatcagactgtccaggtgatccatgggaaacatccattcccaatattattgtcgggaccttggatacaagaggaatggaaggggatgtttcaatttgaagcagggagttcaagccaccaagctgattaataaacaagcaaaaatgttagtgctgaccagaccagatataaaatggtacaatgcgagagaaggaaggatgtgaaatccacaaacctttgcatttatctttaacagtacatttgtaatatactgatcattgaccctagtaggggccacacattgtgtaataattccaaattcagcaagacatttccgcttccaGggccctattagagaagaacatgtgaatgccatagaagggttgcatatttgaataggcatagcacaatcttagtgtaactgaccataaatatctgaattcttcctctcagcaagaacacagagcagaaactttggttgtccaggaagctttttttgcatcttgtcaatcatgccatctacccttcttgcagcaggagctcgtcgcattgaagggtcctcctcaatgacatcaaatggatcttctactttctgcaaagccagtcttttaagtgagggaatcgcatttgatgaaacatgcaacactaaagtgagggaattgcatttgatgaaacatgcaacattttgagtaaaacagaaaaacctacaattcctttcatgccaccacacttgatgatgtctcggacaagatccctaatattacaccgtgcagaaaagttaacaactgcccatttctcgatactgctagccttaatgagcctctgtaaaaaaagatataacagaagttacaatatgtatcacaacatggaagtctaaagagtaaagtgggagtagaactgagacactaaccttattattaaagttccaccgcccattacgtgcaaaaagatcttcaccatttccagcttttagctgccaaagaaaaacatacaattgatctaaaccatatacaaataagagaacacagcaaagggttaattaaaaaacgcagcatagacagttctgactgaccttgggggcctgcagcaccctgccagcaacttgtgtaaaacctcgagcaattgaaataccacaagaattcaacataggctctgaatcatagttgctgcgtttcagcacctgcaaattcaccattgatgatttgattattctgtcaggaaaggggtacatcagctcttaagctgacagaggagcaactcacatcagacaaaactgacatcctttcttcaggtttctgcctggacttctcaacaagcgaagacctctgtagtgtactcaaagccttggtatacctttgcaaaggcacaagagagcagagctagcaagcataggaacattcaccacaatcagcaaaggatgttaattggaaaatatttatgttggattaaggaaaacaattacctcaattggaaaataagttggccgttttggtttccccacattgatacagggaaaatcaccagagtatctcaactctatgccccgattcttcacaaagtactcgtaaacagatacttccacaccttcaggttcaccatcaccatttctttgcttcaaagtgaacctagataattatgtgtagctaagtaaataaagctatttctcaaagtacataaaaaaccaaagttgcaattgcaaaaacgtcaaatatccaggcacacaacaatataaaatataagaaaaacaacacatgaacaagctcacatttgttcatagcagtttctctcactcaaaccaacaatcttgtattcagtatttgctggacttgtttttatccttaaattcttcagagcacgcttggcctacaaatttgtgttaacaatacaattcagtcatctcaaagggttcacattgttcttgtcattcattcttaaattattgttttactcagtgaaatgacgacataatacctttgcccagtcaattttgtttggatgatcaaccttctggttggcaagtagaaaatctaccacaggaccaggtttcacaatcatcgttgtggacacatctgcacaagttaaagcagcaacatgcaaacatgtattatcagctacagcgtgcatgtgaccacatacaaaatatgaaattgggccataatagcaatcgtttaccgatattgagtgaaagtccactctgtgtagctcggaagcttgaatggaatcccctacagcccatcacaccaCCACccaagtcaacaaaatttgaaggattgttatggaaaaaggattggcgaaccaaaaggcaacccctgcataaaaaaaggaaaagttaagaacaaatgcaaatcagccatgatgttaaacattctaaacaatatagctagaatatttgcaaagtaGgggcttccaaaagatatggaaacatactgttttgcggaatgctgtcttaatatgatatcaataacacgaattgcttcttGggtgttttcagattcctggcctctcaaggcctgagcaatggcgctcataggaatttttgctgcaaagttcagctcaactttaaaagttttcgtctggtatgaccttctaacccttttcctgtcatttcctggactgtcattgccagggctaccaccatttgcagatgacctaatagcattggaagttatgtgagcaaagggaaagaagtaaaaaaaaatgttggcatcattgaaagtagcagaaagaattgagatagataattactttccagtgttgaagtcttccagaactaccgtgaactcattgttcacttgaggaagagcaccaatggtgaacaggctcttctcaccatcgtatgcaaaatctttatttgccagctcagacgcataggtctgctggagtttgtccagcacctttctacctatgccctttccatccactggtctatcatcctcatacttcagattaacctgtgtaactcaagcagtagtggcaatcagacatgaacaaaaggaactcaaagaagaaaaataaagaactgttacaagggctagagacgaacatagtagtgatggAaaaattcgtctgctgccttcagtgaaaccttgaagtggttcgtcagcagctgtatcggctgcccttttttgccacaaccagagcgagccatcaaggccctcttaggttttgataacttttttgtatcatcagttttaattggctcagcatttggtggcaaaggtgggggaggtggcaactcctcgatttcaccactgttggactccatgtgcacacttctctgaaatagagcatAaaagccaactaaataaacacttctctcagactagaatataacaagttaaatcaatcttcaaaactagaatcatacagaaaacccctaggtctcactaatatattttgcatgcaaatgaaatcgAaaaatacaagaaaattattatgacaccacaaggtttaaaacattcaactaaaagcataatatagtaatatgctaacacaaacgttatgtcagtcagtctgccatgttgcatatgcacacaaaagaacacacaacaaacgtttcaagtcaccgttcaagtccaaactcttatcacacctacatgagtttgccagtacactttaaatacactgtcatactgagaatgacctgaggttactactacttcgagggtcaaccggtgccaaaacaactaagcttcttgtttgccatctacattaaaatggtactccagtttttaacaatgtattcaaagacactaatcgtttgtcagacgattgcaacattaacaagaaagcctgagaaactagtagttcatgcAaaaaaaatatgtataactactgagagtgagaccacaactatagaaaattcctagtcaactcacaaagattaaaacattaattaatagccaaattaagagcgtagtacacttaccgactaactccccaaagctgtcaaagcgctgccctatcctgcacacaaaatacataactcattcaacaattaacaaggtaaatcaaaacagaaaaggaaaggaaactaaaacccatgctaacagataccagacaatgaaaatgctctgggtcaagagtttttcctccagaaaaagaaaagaaaagcaaaattagaaaactattttcttaatttttctcccaaaAAGataggagaagagtgcatccagcctacagactttcaaaactacaacaaacacaacctacccatttttaagtacaagaaacttagccattttcttaatcagcaaatcttcttttcccagtcaagatcagtatcataaaccttcccaaaaacccctaaaccctaacaaaactacacaggcagatatccaccaaaacaagcatcaaaaggaggtgctcccaaacaaaaaaaaataaaggtttaaaacaacaaggaccagaaatatcaaacgaagaaagaacgcaaaaatgaaaaagaatcgcacaaacactgtttcggataaatcttcAaaaaaaaacatctaaaacaaaccaccataaacggcaaaagacgaaaaagccccgagaacaacgcaacgaagaacgaacgaaatcaggggaaaaaaacaaagaaaaccccaaatcaaactccttaatagaatgcatcaaaatgcagcgatctttaaaccaagaacagaggaaaaccgcaaaagaacacaaaaGaacagaaacttccacggtaaaaccccacggaatccgccctcctctcctccccgaaaaaccccaccaccaccaagaaccgcaccaaacaacacaagcccaaccgctcccgcatacacaacaatccaatctgcaaaaacccccccgccaagaaccctagatttccctccacccaaaatgaaaagcgggactcctcgccttaccaaagaaaacgatgcaagaacggaggcgacctctccgagagggtggtgcgctcctcctccttgtcccccctccctcctctcgaaactcgaacgcctcgcctctccacacaccctctctctctcttgtaggaggagaagacgcagcggcaggggacgaagggtaaaaccggcacttcgcaggacctcgtcgaggccacccgcgccaccgtggcacgggggtggatcgggaacgtacacgtgtccccCGcgagcacacggggatgcgcggcgacacgtggacgggccagatggccccCGcgcgcacgacggcccagttggaatgacgcttttacccccggggctctCccccctctacccccgtgttctcctccactacccaaccgaaaccatccgctttactgctgggacatcgctgacgtgtggaccacgagggtttctggccccacgtgtcatcgacctgtgtggctgtggatgccgaacagtcagccttctttccagcttgccgatggtatcccggcggcgacacgtactcgctcaccgtgggccccgggggaaggtctgggcccacctgtaagtgacagcagttcgtttcgcctagggtagttccgcgctcacggtagacgtgacaacgacactttcgccgtatggatcggtggagcccacccacccatcctccgctgcgtacggcgttaagtccgacggagggggagggggcgaggaatccgaagcttcgaacgatccgacggctgagtcgcctccacgcgggcaatcccagccgtcggatattcacgccgtcccccgagccgttaaactccccgggcatccacgccctctcggctctcttctcttcgcttcctccacccgaaaaggctgccccgcacgcgcgcgagcgagggaacccgcgcccatgggccatggcccatggaccgagcctaccaaacaccatcccaccgacacgtgggtcccaagcggccctcccatccgagccgtctccgcggtgcacggtggacgcggcgcattcaacgcggggtgtggagggagtacgagcggtggctgcatctctgcgtgttgtctggcctggttttcgcaaaggatttttgatgaGgggggagagagggcgaggcgaaagctgggccggtgcgtttccttcttcaatggtggccaaccctacacctgccaaccatgctactgtcctacaattgccacatttggagggttgggtgtcaggctcatggttttccacaccgtcgggccggggttaccgcgcccgggcGgtaagcacggttaccgcgtgataaccgtgaaaaaccgtatgaaaccgtgtaaaatttatctaaaatttaaattattttttaaatttatttaaatttaaggaggttaccgtggtatttatattaccgtacccccgcggtaactgcgtagttactggcggtaagtcaaaccctgggcaggctgtgattttggtacaaattccatatttgagttttgggggtgtttgtggaaagagaggtataatggggaaggattttaaatttgaataattggaggattaagtgtaagtgcagatggggtgggttctaaatttttttttttacttttgtatatgagtactcttttggaaggtaattgtgtgaatatttaattataactaatattagtctattttttttaattagactaatggtattacatatttgatgtcagcaattcattgttcttaacttttgtggatagaactcatttagtaggaaaaaaagaagatattagatagggtgattaattatgtagacatttagataagatggcatagatttagtatgcatttgcccaatttcttttaggcccattttggatctaaaattttgataaatggatttcattttcatttctaatataatttagggaaaaaaccatgaagttcagttcaaatgttaaattctttttttttcagtgccatctagaattgcaaaagaaaaataatcaacctaagcataattgaatagaggctagtgtaagcaacaatcataacgtaccacctccacctcatttgtttatgtcatcgatcagtccccattgttgcacggtgcacatcagatctagcacgtcattcggtgatgtgatatgttggttgtttcacgaaggatgtcacaccacccatggatctaaacatctcttaaaaatggatctaaggatcaatgaccatggagtcatgccaaaatataggagaatacgatggcctaaccccgaggccttggagcaccat
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| CDS seq | atggtgctccaaggcctcggggaaaaactcttgacccagagcattttcattgtctggatagggcagcgctttgacagctttggggagttagtcgttacacaggttaatctgaagtatgaggatgatagaccagtggatggaaagggcataggtagaaaggtgctggacaaactccagcagacctatgcgtctgagctggcaaataaagattttgcatacgatggtgagaagagcctgttcaccattggtgctcttcctcaagtgaacaatgagttcacggtagttctggaagacttcaacactggaaagtcatctgcaaatggtggtagccctggcaatgacagtccaggaaatgacaggaaaagggttagaaggtcataccagacgaaaacttttaaagttgagctgaactttgcagcaaaaattcctatgagcgccattgctcaggccttgagaggccaggaatctgaaaacaccCaagaagcaattcgtgttattgatatcatattaagacagcattccgcaaaacagggttgccttttggttcgccaatcctttttccataacaatccttcaaattttgttgacttggGTGGtggtgtgatgggctgtaggggattccattcaagcttccgagctacacagagtggactttcactcaatatcgatgtgtccacaacgatgattgtgaaacctggtcctgtggtagattttctacttgccaaccagaaggttgatcatccaaacaaaattgactgggcaaaggccaagcgtgctctgaagaatttaaggataaaaacaagtccagcaaatactgaatacaagattgttggtttgagtgagagaaactgctatgaacaaatgttcactttgaagcaaagaaatggtgatggtgaacctgaaggtgtggaagtatctgtttacgagtactttgtgaagaatcggggcatagagttgagatactctggtgattttccctgtatcaatgtggggaaaccaaaacggccaacttattttccaattgagctctgctctcttgtgcctttgcaaaggtataccaaggctttgagtacactacagaggtcttcgcttgttgagaagtccaggcagaaacctgaagaaaggatgtcagttttgtctgatgtgctgaaacgcagcaactatgattcagagcctatgttgaattcttgtggtatttcaattgctcgaggttttacacaagttgctggcagggtgctgcaggcccccaagctaaaagctggaaatggtgaagatctttttgcacgtaatgggcggtggaactttaataataagaggctcattaaggctagcagtatcgagaaatgggcagttgttaacttttctgcacggtgtaatattagggatcttgtccgagacatcatcaagtgtggtggcatgaaaggaattaaagtagaagatccatttgatgtcattgaggaggacccttcaatgcgacgagctcctgctgcaagaagggtagatggcatgattgacaagatgcaaaaaaagcttcctggacaaccaaagtttctgctctgtgttcttgctgagaggaagaattcagatatttatgggccCtggaagcggaaatgtcttgctgaatttggaattattacacaatgtgtggcccctactagggtcaatgatcagtatattacaaatgtactgttaaagataaatgcaaagcttggtggcttgaactccctgcttcaaattgaaacatccccttccattcctcttgtatccaaggtcccgacaataatattgggaatggatgtttcccatggatcacctggacagtctgatataccttcaattgctgcgccacaaggagctcaggaagatgatggcctcattcgggagtTATTAgttgacttctataccagtactggtaaacgtaagcctgatcaagtcattatcttcagggatggggtcagtgagagccagtttacccaggtgctgaacattgagctggatcaaataattgaggcatgcaagtttcttgacgaaaactggtctccaaagtttacactgattgttgcacagaagaatcatcataccaaattttttgtgcctggatctcaaaataacgttcctcctggtactgttgtggacaacgcagtctgtcatccaaggaacaatgacttctacatgtgtgcgcacgctggaatgattggaactacaaggcctacacattatcatatccttcatgatgagataggcttctctgctgacgatcttcaggagttggtccactccctttcctatgtctaccagaggagcactacagccatatcagtcgttgcacccatttgctacgcgcatctcgctgctgctcaggtcagccagttcatcaagttcgacgagatgtcggagacgtcgtcgagccatggtggccatacctcggcgggcagcgctccggtgctcgagctgcctcgcctgcataacaaagtcaggagctccatgttcttctgctga
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| Protein seq | MVLQGLGEKLLTQSIFIVWIGQRFDSFGELVVTQVNLKYEDDRPVDGKGIGRKVLDKLQQTYASELANKDFAYDGEKSLFTIGALPQVNNEFTVVLEDFNTGKSSANGGSPGNDSPGNDRKRVRRSYQTKTFKVELNFAAKIPMSAIAQALRGQESENTQEAIRVIDIILRQHSAKQGCLLVRQSFFHNNPSNFVDLGGGVMGCRGFHSSFRATQSGLSLNIDVSTTMIVKPGPVVDFLLANQKVDHPNKIDWAKAKRALKNLRIKTSPANTEYKIVGLSERNCYEQMFTLKQRNGDGEPEGVEVSVYEYFVKNRGIELRYSGDFPCINVGKPKRPTYFPIELCSLVPLQRYTKALSTLQRSSLVEKSRQKPEERMSVLSDVLKRSNYDSEPMLNSCGISIARGFTQVAGRVLQAPKLKAGNGEDLFARNGRWNFNNKRLIKASSIEKWAVVNFSARCNIRDLVRDIIKCGGMKGIKVEDPFDVIEEDPSMRRAPAARRVDGMIDKMQKKLPGQPKFLLCVLAERKNSDIYGPWKRKCLAEFGIITQCVAPTRVNDQYITNVLLKINAKLGGLNSLLQIETSPSIPLVSKVPTIILGMDVSHGSPGQSDIPSIAAPQGAQEDDGLIRELLVDFYTSTGKRKPDQVIIFRDGVSESQFTQVLNIELDQIIEACKFLDENWSPKFTLIVAQKNHHTKFFVPGSQNNVPPGTVVDNAVCHPRNNDFYMCAHAGMIGTTRPTHYHILHDEIGFSADDLQELVHSLSYVYQRSTTAISVVAPICYAHLAAAQVSQFIKFDEMSETSSSHGGHTSAGSAPVLELPRLHNKVRSSMFFC |
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| Function | Protein argonaute 4A [UniProtKB/Swiss-Prot:Q9SDG8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0011790 | OsLima_01g0011790.01 | Chr01 | 9765318 | 9775002 | - | NAM | ||
| CDS seq | atggtgctccaaggcctcggggaaaaactcttgacccagagcattttcattgtctggatagggcagcgctttgacagctttggggagttagtcgttacacaggttaatctgaagtatgaggatgatagaccagtggatggaaagggcataggtagaaaggtgctggacaaactccagcagacctatgcgtctgagctggcaaataaagattttgcatacgatggtgagaagagcctgttcaccattggtgctcttcctcaagtgaacaatgagttcacggtagttctggaagacttcaacactggaaagtcatctgcaaatggtggtagccctggcaatgacagtccaggaaatgacaggaaaagggttagaaggtcataccagacgaaaacttttaaagttgagctgaactttgcagcaaaaattcctatgagcgccattgctcaggccttgagaggccaggaatctgaaaacaccCaagaagcaattcgtgttattgatatcatattaagacagcattccgcaaaacagggttgccttttggttcgccaatcctttttccataacaatccttcaaattttgttgacttggGTGGtggtgtgatgggctgtaggggattccattcaagcttccgagctacacagagtggactttcactcaatatcgatgtgtccacaacgatgattgtgaaacctggtcctgtggtagattttctacttgccaaccagaaggttgatcatccaaacaaaattgactgggcaaaggccaagcgtgctctgaagaatttaaggataaaaacaagtccagcaaatactgaatacaagattgttggtttgagtgagagaaactgctatgaacaaatgttcactttgaagcaaagaaatggtgatggtgaacctgaaggtgtggaagtatctgtttacgagtactttgtgaagaatcggggcatagagttgagatactctggtgattttccctgtatcaatgtggggaaaccaaaacggccaacttattttccaattgagctctgctctcttgtgcctttgcaaaggtataccaaggctttgagtacactacagaggtcttcgcttgttgagaagtccaggcagaaacctgaagaaaggatgtcagttttgtctgatgtgctgaaacgcagcaactatgattcagagcctatgttgaattcttgtggtatttcaattgctcgaggttttacacaagttgctggcagggtgctgcaggcccccaagctaaaagctggaaatggtgaagatctttttgcacgtaatgggcggtggaactttaataataagaggctcattaaggctagcagtatcgagaaatgggcagttgttaacttttctgcacggtgtaatattagggatcttgtccgagacatcatcaagtgtggtggcatgaaaggaattaaagtagaagatccatttgatgtcattgaggaggacccttcaatgcgacgagctcctgctgcaagaagggtagatggcatgattgacaagatgcaaaaaaagcttcctggacaaccaaagtttctgctctgtgttcttgctgagaggaagaattcagatatttatgggccCtggaagcggaaatgtcttgctgaatttggaattattacacaatgtgtggcccctactagggtcaatgatcagtatattacaaatgtactgttaaagataaatgcaaagcttggtggcttgaactccctgcttcaaattgaaacatccccttccattcctcttgtatccaaggtcccgacaataatattgggaatggatgtttcccatggatcacctggacagtctgatataccttcaattgctgcgccacaaggagctcaggaagatgatggcctcattcgggagtTATTAgttgacttctataccagtactggtaaacgtaagcctgatcaagtcattatcttcagggatggggtcagtgagagccagtttacccaggtgctgaacattgagctggatcaaataattgaggcatgcaagtttcttgacgaaaactggtctccaaagtttacactgattgttgcacagaagaatcatcataccaaattttttgtgcctggatctcaaaataacgttcctcctggtactgttgtggacaacgcagtctgtcatccaaggaacaatgacttctacatgtgtgcgcacgctggaatgattggaactacaaggcctacacattatcatatccttcatgatgagataggcttctctgctgacgatcttcaggagttggtccactccctttcctatgtctaccagaggagcactacagccatatcagtcgttgcacccatttgctacgcgcatctcgctgctgctcaggtcagccagttcatcaagttcgacgagatgtcggagacgtcgtcgagccatggtggccatacctcggcgggcagcgctccggtgctcgagctgcctcgcctgcataacaaagtcaggagctccatgttcttctgctga
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| Protein seq | MVLQGLGEKLLTQSIFIVWIGQRFDSFGELVVTQVNLKYEDDRPVDGKGIGRKVLDKLQQTYASELANKDFAYDGEKSLFTIGALPQVNNEFTVVLEDFNTGKSSANGGSPGNDSPGNDRKRVRRSYQTKTFKVELNFAAKIPMSAIAQALRGQESENTQEAIRVIDIILRQHSAKQGCLLVRQSFFHNNPSNFVDLGGGVMGCRGFHSSFRATQSGLSLNIDVSTTMIVKPGPVVDFLLANQKVDHPNKIDWAKAKRALKNLRIKTSPANTEYKIVGLSERNCYEQMFTLKQRNGDGEPEGVEVSVYEYFVKNRGIELRYSGDFPCINVGKPKRPTYFPIELCSLVPLQRYTKALSTLQRSSLVEKSRQKPEERMSVLSDVLKRSNYDSEPMLNSCGISIARGFTQVAGRVLQAPKLKAGNGEDLFARNGRWNFNNKRLIKASSIEKWAVVNFSARCNIRDLVRDIIKCGGMKGIKVEDPFDVIEEDPSMRRAPAARRVDGMIDKMQKKLPGQPKFLLCVLAERKNSDIYGPWKRKCLAEFGIITQCVAPTRVNDQYITNVLLKINAKLGGLNSLLQIETSPSIPLVSKVPTIILGMDVSHGSPGQSDIPSIAAPQGAQEDDGLIRELLVDFYTSTGKRKPDQVIIFRDGVSESQFTQVLNIELDQIIEACKFLDENWSPKFTLIVAQKNHHTKFFVPGSQNNVPPGTVVDNAVCHPRNNDFYMCAHAGMIGTTRPTHYHILHDEIGFSADDLQELVHSLSYVYQRSTTAISVVAPICYAHLAAAQVSQFIKFDEMSETSSSHGGHTSAGSAPVLELPRLHNKVRSSMFFC
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0011790 | OsLima_01g0011790.02 | Chr01 | 9765319 | 9772841 | - | IsoSeq | ||
| CDS seq | atgtctaccagaggagcactacagccatatcagtcgttgcacccatttgctacgcgcatctcgctgctgctcaggtcagccagttcatcaagttcgacgagatgtcggagacgtcgtcgagccatggtggccatacctcggcgggcagcgctccggtgctcgagctgcctcgcctgcataacaaagtcaggagctccatgttcttctgctgagcagccgcttggctgctatgttatg
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| Protein seq | MSTRGALQPYQSLHPFATRISLLLRSASSSSSTRCRRRRRAMVAIPRRAALRCSSCLACITKSGAPCSSAEQPLGCYVM |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr01 | 9767420 | 9767874 | - | OsLima_01g0011790.02 | OsLima_01g0011790.02,OsLima_01g0011790.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.030711 | 0.369788 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0275600 | RBH | 10.391339 | 7.753963 | 55.184101 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g16870 | RBH | 6.904422 | 5.103039 | 13.811574 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0275600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0012270 | RBH | 4.160873 | 27.062971 | 53.421860 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0011950 | RBH | 1.937177 | 2.937148 | 26.190777 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0012290 | RBH | 3.928113 | 20.435196 | 80.186470 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0011750 | RBH | 0.927869 | 0.978665 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0011840 | RBH | 22.063652 | 35.730659 | 129.745911 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0161300 | RBH | 12.363701 | 16.943529 | 91.998791 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0011790 | RBH | 1.165990 | 1.901177 | 10.231987 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0159000 | RBH | 24.187794 | 25.884793 | 123.915909 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0011870 | RBH | 2.606878 | 33.494141 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0011770 | RBH | 12.550703 | 26.049845 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0011920 | RBH | 3.335437 | 3.581969 | 12.749495 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0011770 | RBH | 1.136592 | 21.389912 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G011930 | RBH | 1.957028 | 15.031302 | 25.637197 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0011770 | RBH | 7.579398 | 38.175697 | 55.383213 |
