Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_01g0009810 | OGI:01019320 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr01:8113435-8117119 | ||||||||
| Gene Symbol | GA2OX7, OsGA2ox7 | ||||||||||
| DNA seq | atcaaactcaaccatccttgctttggctgcgtagtgtgtagcgcgcgcgaacgaacgaacacaccaagctttgctctgcttttcctctgtccaaaacagccggccatggtggtgcttgccaagggcgagctcgagcagatagccctgccggcggcgcacccgccgccagccgacgtgcgcgcgatcgacctgtccGccacgggtcccgcccgcgcggcggcggcgcgcgcgctggtggcggcgtgcgaggagcaggggttcttccgggtgacgggccacggcgtgccgccggggctggtgcgcgccgcggaggccgccgcggcgcggttcttcgcgctgccgcagcccgacaaggaggccgccgcaggggcgccgctcgggtacgccagcaagcggatcggcagcgccggcgacctcggctggatcgagtacctgctactctgcctcgcccccgccgccgccgccgcggcattgccgtgcgccgcgacgtcgcccacgcctccttgccccttacggtaaataccgatcttttcaaacgcagcagcagcagcgccctactgctactatctcgcggtgttctagattatatcttttaagatttgatgaagtataattataaacgttttattatcgataaatacatcgtttatcataaaaaattaattagtcatAaatatgagtatgccactgtaataaatctaaacggtgaatcgtattttggcacgccaccacgtgcGgggtgcgtcggattttgaccgttccgggaaggaagcgagcgaaggcaccaggcggctggacaaagcggtgacatctacgtctgcgttgcgcgttgcaccggcgggtcactgttgcttccgtgccgctgcctgcgcagacagatacatgcaccgttgctgcacgcatgtcacgtctctcctccgttcctttgggcattattaagtccagtcatcgttgaatcatcattttcttcgcatcactttattttcctttaacaaactttaataattggtccattggaacgttcgtgtcaaacattagatggagggtccgatcctagtgagctgagctcggacaagtggagtacttgtttcgacagtacggacacatgatgtgtgcaacacagggtttattggggtgtagtgtagggactgatctgaagtcgttatacgcgcgcgcgagcagcaaaacggaatcatgctattattagttccattccattttgctgtgtagtagtataagcaagcgatagttttgtccaggaatctttctgatgttcgcatgcaccagcattggataccttaggacttgctgttcttcttttccccgtgtatttccatttggcacgtggaacattttacttgagttgaagttcacaggaacgtcagcaacattctaaaaagctcattaagtgtggtgtgtggtggagccatgtcacccatggtgcgcatgacttcactcattactagtggtttaagggggtgtttaggagagacttatgtttttgtgaaatggacttagttcctaattcccaaacaCccctaaattatattaccaaaaaatacacacgtacgcgtatacttaatttatcattggcttttatctttttaagtcttagagtgtaatagagcagtgttgtgtgattgagaaaagattcgggattcaaattcatgacgtgggtatcgttctccattaattaattcgagtcacgcatatgttttcagactttcagcattactctttccgttccatataaagtaaatctagaaccgaatgtaatacattttaatactataaatctagatatatttatatttagattcgtcgtagatgtatcacgtccaatcttaagttaattcttctagaGgggcttttgatacattcataaataagcgttcatttattgtagtgttgcccatctggtaaattaatagtgagaaaatcgtgtggataagatcgcccatcgtggccgcgtgtcgcttcacaatatctcggggccgacgtacggaggccggcgccggcggctccgtctgacgctgccgttttgattcacgtgcgcgcacggtcgcatcgccgtacgtggcgcagctcgccacatcggtcgcatgcatggtggtgatcgaccaacaccaccgccggatcgatccatgcatgcatgatgcatctcccctgacctgcggatctgcccgtctctatccacaaaccttttacatcatcacgatccaagccgccgatcgaattcgttgcgcgattttggcttgatctctttgttggtttcttcttcagttgcgttctgcgtgaaccgcgatcggtggtttagtctggtttgtttattttgctcgcggtgcagggagcttctaagcgagtacagcgcggcggtgcggcgggtggcgtgcggcgtgctggagctgatggcggaggggctcggcgtcgggccggcggacgcgctggcgcggctggtggcgcgcgaggacagcgactccatcctcagggtgaaccactacccgccgcgccccgatcagctgggcggcggcggcgggccgaacctgacggggttcggcgagcacaccgacccgcagatcatctccgtgctccgctccaacggcgcccccgggctggagatctccctccgtgacggcgcctgggcgtccgtgccgcacgacggcgacggcgactcctttttcgtcaacgtcggcgacaccctccaggtacgtagtacacgtactatacttccgttgcttgcgcgcacacacaaaattaaaGgtcaaaaagtttggtcacttctgctgtttcgcgtacgtgcccctgtcgatgtcgaatcgaccgttccatcgatctccaatccagtcgagcaaatcagggtgatcagtgcacgatcgactgcacggtgtactatgcgtcaagcaagcgccatcaacgcacggttacttgtatggttaactagcacaatcatctgcatgccatgcatataTAGggCccagcctgcacgtgaaaacacgtacacttgcatgctagtacgtacgtgcctagtactactactaatgggtccatgaacggtgatgagatcgatcggtcactgcaatttgccaactctcaagaaaaggccatgcaaattgttgcacatcacatcgattaattattgacttaattatttacatttctctgtatccctgaggttaaatttctttgtgctgctcgtgtgtttgcgctttgcaacccacccaggtgctaacgaacgggaggttcaggagcgtgaagcacagggtggtggtgaacagcgagaagtcgagggtgtccatggtcttcttcggcggcccgccgcccggcgagaggctggcgccgctgccggcgttgttaggggacggcggccggagccggtacagggagttcacctggaaggagtacaagggcaGCggctgcaagggccggctcgccgacgacaggctctgcagatttgagaactagtagtagcagtcatctgacttctatgtacgtttgtgtatattaattcgcaagtagtgattatcactgtggtttgcctctagcaatagccttgtacgtaaatttcagtatgtgttaatctgtttatatataagcttccagcaaaagttgcatgcatgtaagtgctctgtggacagtttagttttattacaattaaatgagctctcttaagatgatggttgctagt
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| CDS seq | atggtggtgcttgccaagggcgagctcgagcagatagccctgccggcggcgcacccgccgccagccgacgtgcgcgcgatcgacctgtccGccacgggtcccgcccgcgcggcggcggcgcgcgcgctggtggcggcgtgcgaggagcaggggttcttccgggtgacgggccacggcgtgccgccggggctggtgcgcgccgcggaggccgccgcggcgcggttcttcgcgctgccgcagcccgacaaggaggccgccgcaggggcgccgctcgggtacgccagcaagcggatcggcagcgccggcgacctcggctggatcgagtacctgctactctgcctcgcccccgccgccgccgccgcggcattgccgtgcgccgcgacgtcgcccacgcctccttgccccttacgggagcttctaagcgagtacagcgcggcggtgcggcgggtggcgtgcggcgtgctggagctgatggcggaggggctcggcgtcgggccggcggacgcgctggcgcggctggtggcgcgcgaggacagcgactccatcctcagggtgaaccactacccgccgcgccccgatcagctgggcggcggcggcgggccgaacctgacggggttcggcgagcacaccgacccgcagatcatctccgtgctccgctccaacggcgcccccgggctggagatctccctccgtgacggcgcctgggcgtccgtgccgcacgacggcgacggcgactcctttttcgtcaacgtcggcgacaccctccaggtgctaacgaacgggaggttcaggagcgtgaagcacagggtggtggtgaacagcgagaagtcgagggtgtccatggtcttcttcggcggcccgccgcccggcgagaggctggcgccgctgccggcgttgttaggggacggcggccggagccggtacagggagttcacctggaaggagtacaagggcaGCggctgcaagggccggctcgccgacgacaggctctgcagatttgagaactag
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| Protein seq | MVVLAKGELEQIALPAAHPPPADVRAIDLSATGPARAAAARALVAACEEQGFFRVTGHGVPPGLVRAAEAAAARFFALPQPDKEAAAGAPLGYASKRIGSAGDLGWIEYLLLCLAPAAAAAALPCAATSPTPPCPLRELLSEYSAAVRRVACGVLELMAEGLGVGPADALARLVAREDSDSILRVNHYPPRPDQLGGGGGPNLTGFGEHTDPQIISVLRSNGAPGLEISLRDGAWASVPHDGDGDSFFVNVGDTLQVLTNGRFRSVKHRVVVNSEKSRVSMVFFGGPPPGERLAPLPALLGDGGRSRYREFTWKEYKGSGCKGRLADDRLCRFEN |
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| Function | Gibberellin 2-beta-dioxygenase 3 [UniProtKB/Swiss-Prot:Q8S0S6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0009810 | OsLima_01g0009810.01 | Chr01 | 8113435 | 8117119 | + | NAM | ||
| CDS seq | atggtggtgcttgccaagggcgagctcgagcagatagccctgccggcggcgcacccgccgccagccgacgtgcgcgcgatcgacctgtccGccacgggtcccgcccgcgcggcggcggcgcgcgcgctggtggcggcgtgcgaggagcaggggttcttccgggtgacgggccacggcgtgccgccggggctggtgcgcgccgcggaggccgccgcggcgcggttcttcgcgctgccgcagcccgacaaggaggccgccgcaggggcgccgctcgggtacgccagcaagcggatcggcagcgccggcgacctcggctggatcgagtacctgctactctgcctcgcccccgccgccgccgccgcggcattgccgtgcgccgcgacgtcgcccacgcctccttgccccttacgggagcttctaagcgagtacagcgcggcggtgcggcgggtggcgtgcggcgtgctggagctgatggcggaggggctcggcgtcgggccggcggacgcgctggcgcggctggtggcgcgcgaggacagcgactccatcctcagggtgaaccactacccgccgcgccccgatcagctgggcggcggcggcgggccgaacctgacggggttcggcgagcacaccgacccgcagatcatctccgtgctccgctccaacggcgcccccgggctggagatctccctccgtgacggcgcctgggcgtccgtgccgcacgacggcgacggcgactcctttttcgtcaacgtcggcgacaccctccaggtgctaacgaacgggaggttcaggagcgtgaagcacagggtggtggtgaacagcgagaagtcgagggtgtccatggtcttcttcggcggcccgccgcccggcgagaggctggcgccgctgccggcgttgttaggggacggcggccggagccggtacagggagttcacctggaaggagtacaagggcaGCggctgcaagggccggctcgccgacgacaggctctgcagatttgagaactag
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| Protein seq | MVVLAKGELEQIALPAAHPPPADVRAIDLSATGPARAAAARALVAACEEQGFFRVTGHGVPPGLVRAAEAAAARFFALPQPDKEAAAGAPLGYASKRIGSAGDLGWIEYLLLCLAPAAAAAALPCAATSPTPPCPLRELLSEYSAAVRRVACGVLELMAEGLGVGPADALARLVAREDSDSILRVNHYPPRPDQLGGGGGPNLTGFGEHTDPQIISVLRSNGAPGLEISLRDGAWASVPHDGDGDSFFVNVGDTLQVLTNGRFRSVKHRVVVNSEKSRVSMVFFGGPPPGERLAPLPALLGDGGRSRYREFTWKEYKGSGCKGRLADDRLCRFEN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0209700 | RBH | 0.182742 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g11150 | RBH | 0.123580 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0209700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0007990 | RBH | 0.0 | 1.964173 | 0.287390 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0007640 | RBH | 0.0 | 0.802278 | 0.238803 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0007990 | RBH | 0.0 | 0.0 | 0.743374 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0007490 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0007630 | RBH | 0.0 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0097900 | RBH | 0.0080385 | 0.352456 | 10.853302 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0007560 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0098500 | RBH | 0.5940095 | 0.396306 | 4.249982 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0033080 | SBH | 0.0 | 0.249518 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0007610 | RBH | 0.129271 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0007610 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0007610 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0007520 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G007620 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0007430 | RBH | 0.0 | 0.0 | 0.000000 |
