Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_01g0009610 | OGI:01019720 | 11/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr01:7925560-7926115 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGAACACGCCCAACTCGTGGCTGTTCGCAGACAACTCCAAGTACAGCACGCGGGCGCGGCTGCTGTTCATGGGGCTCTCCTTCTCCATCGGCATCCTCTCCTTCCTCGTCTACCTCGCCATCTGGTACACCTGCATCCGCCGCCGCCGGAGCCGTCAGCTCCGCGGCGGCGGCTCGGCGTCCGCGGATCAGGAGGCGCCCGAGGCGAACAGCCACGGCATGAGCGCCGCCGCGATCGCCGCGCTCCCGACGTTCGGGTACGAGGCCTCGGCGGCGGCGGCGGCGCTGGATTGCGCCGTGTGCCctcgggcaggtggacgccggcgagaaggtgcggcagctgcccaagtgcgggcacctgttccacgccgagtgcgtcgacgcctggctgcgcgcgcactccacgtgccccatgtgccgcgccgccgtcgaaggccccgccacggccgccatcgccaagaaggccagctccggcggcggcgccaccgacacgCcccccgtcgtggcaccagcaccaccggcggcggcagaggcactgccactgccacctgtctag
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| CDS seq | ATGAACACGCCCAACTCGTGGCTGTTCGCAGACAACTCCAAGTACAGCACGCGGGCGCGGCTGCTGTTCATGGGGCTCTCCTTCTCCATCGGCATCCTCTCCTTCCTCGTCTACCTCGCCATCTGGTACACCTGCATCCGCCGCCGCCGGAGCCGTCAGCTCCGCGGCGGCGGCTCGGCGTCCGCGGATCAGGAGGCGCCCGAGGCGAACAGCCACGGCATGAGCGCCGCCGCGATCGCCGCGCTCCCGACGTTCGGGTACGAGGCCTCGGCGGCGGCGGCGGCGCTGGATTGCGCCgtggacgccggcgagaaggtgcggcagctgcccaagtgcgggcacctgttccacgccgagtgcgtcgacgcctggctgcgcgcgcactccacgtgccccatgtgccgcgccgccgtcgaaggccccgccacggccgccatcgccaagaaggccagctccggcggcggcgccaccgacacgCcccccgtcgtggcaccagcaccaccggcggcggcagaggcactgccactgccacctgtctag
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| Protein seq | MNTPNSWLFADNSKYSTRARLLFMGLSFSIGILSFLVYLAIWYTCIRRRRSRQLRGGGSASADQEAPEANSHGMSAAAIAALPTFGYEASAAAAALDCAVDAGEKVRQLPKCGHLFHAECVDAWLRAHSTCPMCRAAVEGPATAAIAKKASSGGGATDTPPVVAPAPPAAAEALPLPPV |
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| Function | RING-H2 finger protein ATL7 [UniProtKB/Swiss-Prot:Q9SN28] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0009610 | OsLima_01g0009610.01 | Chr01 | 7925560 | 7926115 | + | NAM | ||
| CDS seq | ATGAACACGCCCAACTCGTGGCTGTTCGCAGACAACTCCAAGTACAGCACGCGGGCGCGGCTGCTGTTCATGGGGCTCTCCTTCTCCATCGGCATCCTCTCCTTCCTCGTCTACCTCGCCATCTGGTACACCTGCATCCGCCGCCGCCGGAGCCGTCAGCTCCGCGGCGGCGGCTCGGCGTCCGCGGATCAGGAGGCGCCCGAGGCGAACAGCCACGGCATGAGCGCCGCCGCGATCGCCGCGCTCCCGACGTTCGGGTACGAGGCCTCGGCGGCGGCGGCGGCGCTGGATTGCGCCgtggacgccggcgagaaggtgcggcagctgcccaagtgcgggcacctgttccacgccgagtgcgtcgacgcctggctgcgcgcgcactccacgtgccccatgtgccgcgccgccgtcgaaggccccgccacggccgccatcgccaagaaggccagctccggcggcggcgccaccgacacgCcccccgtcgtggcaccagcaccaccggcggcggcagaggcactgccactgccacctgtctag
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| Protein seq | MNTPNSWLFADNSKYSTRARLLFMGLSFSIGILSFLVYLAIWYTCIRRRRSRQLRGGGSASADQEAPEANSHGMSAAAIAALPTFGYEASAAAAALDCAVDAGEKVRQLPKCGHLFHAECVDAWLRAHSTCPMCRAAVEGPATAAIAKKASSGGGATDTPPVVAPAPPAAAEALPLPPV |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0212700 | RBH | 0.0 | 0.0 | 3.126590 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g11460 | RBH | 0.0 | 0.0 | 0.575985 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0212700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0008200 | RBH | 0.0 | 0.0 | 1.220803 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0007840 | RBH | 0.0 | 1.735802 | 1.060214 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0008180 | RBH | 0.0 | 0.0 | 1.900060 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0007700 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0007840 | SBH | 0.0 | 0.0 | 2.148210 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0100400 | RBH | 0.360772 | 1.098118 | 0.095341 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0007760 | SBH | 0.0 | 0.0 | 0.120828 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0101800 | RBH | 0.1013845 | 0.0477775 | 0.30666 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0010860 | SBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0007810 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0007810 | RBH | 0.0 | 4.366239 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0007820 | RBH | 0.0 | 0.0 | 1.035443 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0007730 | SBH | 0.0 | 0.375007 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G007810 | SBH | 0.0 | 0.0 | 0.437055 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0007630 | RBH | 0.0 | 0.0 | 2.084697 |
