Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_01g0009260 | OGI:01020680 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr01:7481593-7483862 | ||||||||
| Gene Symbol | OsbHLH037, bHLH037 | ||||||||||
| DNA seq | gtcatgcatcatgcatgaaggagcaaagctcctagttactagttaaactgaagttgcagtgaaatgtgaaaatgtcaaatatatatatgtcaaatgcaaggtaattaatcatgcatggagcacaacgctcttcgaaaagataagcagcagcaaaatgctaagtgctaaccaatgttgagaagccacttcagtaattaatcttgccaaaaagaaagaaagaaagaaattaaagaagaaactcacttcagctttgtatctttcttttacaaccatgatcgattaatttatcagaagcaaaaatcactgcaaccgatcagatctttttgactttggcgtaattttctctgaaacttgtcaagacgaggagctcgatgactcgaacgtggagaccttccggcgtttgctgcccagcagcgacgccgccctgggcgcgaagtcgaagccggagctggccttgtcgagcacggactggagcgcgtggcgcaccgaggccatggcggcggcggcggcgccgccgcgagacccgcacgagaccaggaaggcgaggcggacgcggccgcccagcgtggtgacctcggagccgaccacctccagcccgagcggctgcagcgcgcgcttgacgtccacgaagaggtcggcgcggtcgtcgcagctcagcgtcgccctgaggaggagggggccttctcctccgcctccggtggcggacgcttcgtcgacggcgacctcgtcggcgccggacgggacggtggcgcgccggccgacgcgcgccgcggcgctcttcagcttcttgacgtggcccaccacctcggccagcagcgcggccttgtccatctgaaaaagcccaggagagaatcagtttctggcccaaataaaaaaggcccatctcggcccaacgtgtcgtgggccgcgtgagagttcgccgtcgcttggtgcaattgactgcgccgccgccgccgccgccgccgccgccgcgagacctcgccggcaacgaggtgggggaggtgctcaccttgtcggtgcagggcaccatggtgcggagcgtggcgaggtgggcgttgatcctctcccgccgccgccgctccgcctcgctgtggctcttgagcgccatcgccgccttctcctcccggccgcctccacaattcctctttgccatctccatggcggcgactgcggcggcggcggatgcgtccatcccctcagtttcaccgtcgtccaacgcgggcgctcggccggccggttggccgagaccatggccgccggcgaagccaccgtgATaTACCCCTGGTACTCATAGAGCCCACCGCCGGCGACGGCGTCACCGAACGGAGCAGAGCCCATCTCGTCGTCGGTGAAGGCCAAAGGACATGCAGATCAAAGAGCAAACAGCCACTGCCTCTTTCAATGGATCAACGAAGGAGACAAAGGTAACAACTAACAACTCCTCCTGCACCCAAGAACTCGCAGGCAAAAGCTCCAAGATCAAGAACTCCTGAAACGCGTCTCCAGGATGTCACAGACAAGAACCTGCAAGATTCAGACAAGGACGAGAAAGCCAGCAAGAAGAACACACAGGGGCAAGCAGGGCAGAGTGGTGGCAGAcagcagcaagaccaagggccctgctcccaagaacgcctcagaaatggcgaagatcaaaggagcagaagcttccaacccagatcacaagaaaagcagagccgccatgtcgtttgcctgcttgcttccaggacgcgtgaaacagtgaggcgacagggagggacaaatcaggatggcacaaggatcgtagcccgtgtcttcctcaggctgttcaacaactcaggagagattcagacaccgagaaaagaggaagaggaagtggaagatgcagaggaagaggaagagaggtcaggtcaggtcaggtgcccggcggccgattcggcgggcacgaccagaaggggagcctgacacgccgtagcttcctctgctccgactccgagtccgccttgcagaatcttggcgtgcggcggcgtgcttccatcactggcctcaccgagctcctgccgaacagcatagcttagtgcagggcacgtttcatcttggtgcttctctgctttgtgaacgggatcatcttctctcaacgacagatgcaagtatggtgatgatctgtgtgcagataatctgtgtgtttcctctcagtttcttggtaattgatctcttcagaaacttctgcaggattgaggagggagtaggcaacaggcaaggatgaactgaggaggaagaggactatgaga
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| CDS seq | atggacgcatccgccgccgccgcagtcgccgccatggagatggcaaagaggaattgtggaggcggccgggaggagaaggcggcgatggcgctcaagagccacagcgaggcggagcggcggcggcgggagaggatcaacgcccacctcgccacgctccgcaccatggtgccctgcaccgacaagatggacaaggccgcgctgctggccgaggtggtgggccacgtcaagaagctgaagagcgccgcggcgcgcgtcggccggcgcgccaccgtcccgtccggcgccgacgaggtcgccgtcgacgaagcgtccgccaccggaggcggaggagaaggccccctcctcctcagggcgacgctgagctgcgacgaccgcgccgacctcttcgtggacgtcaagcgcgcgctgcagccgctcgggctggaggtggtcggctccgaggtcaccacgctgggcggccgcgtccgcctcgccttcctggtctcgtgcgggtctcgcggcggcgccgccgccgccgccatggcctcggtgcgccacgcgctccagtccgtgctcgacaaggccagctccggcttcgacttcgcgcccagggcggcgtcgctgctgggcagcaaacgccggaaggtctccacgttcgagtcatcgagctcctcgtcttga
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| Protein seq | MDASAAAAVAAMEMAKRNCGGGREEKAAMALKSHSEAERRRRERINAHLATLRTMVPCTDKMDKAALLAEVVGHVKKLKSAAARVGRRATVPSGADEVAVDEASATGGGGEGPLLLRATLSCDDRADLFVDVKRALQPLGLEVVGSEVTTLGGRVRLAFLVSCGSRGGAAAAAMASVRHALQSVLDKASSGFDFAPRAASLLGSKRRKVSTFESSSSSS |
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| Function | Transcription factor bHLH51 [UniProtKB/Swiss-Prot:Q9XEF0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0009260 | OsLima_01g0009260.01 | Chr01 | 7481593 | 7483862 | - | NAM | ||
| CDS seq | atggacgcatccgccgccgccgcagtcgccgccatggagatggcaaagaggaattgtggaggcggccgggaggagaaggcggcgatggcgctcaagagccacagcgaggcggagcggcggcggcgggagaggatcaacgcccacctcgccacgctccgcaccatggtgccctgcaccgacaagatggacaaggccgcgctgctggccgaggtggtgggccacgtcaagaagctgaagagcgccgcggcgcgcgtcggccggcgcgccaccgtcccgtccggcgccgacgaggtcgccgtcgacgaagcgtccgccaccggaggcggaggagaaggccccctcctcctcagggcgacgctgagctgcgacgaccgcgccgacctcttcgtggacgtcaagcgcgcgctgcagccgctcgggctggaggtggtcggctccgaggtcaccacgctgggcggccgcgtccgcctcgccttcctggtctcgtgcgggtctcgcggcggcgccgccgccgccgccatggcctcggtgcgccacgcgctccagtccgtgctcgacaaggccagctccggcttcgacttcgcgcccagggcggcgtcgctgctgggcagcaaacgccggaaggtctccacgttcgagtcatcgagctcctcgtcttga
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| Protein seq | MDASAAAAVAAMEMAKRNCGGGREEKAAMALKSHSEAERRRRERINAHLATLRTMVPCTDKMDKAALLAEVVGHVKKLKSAAARVGRRATVPSGADEVAVDEASATGGGGEGPLLLRATLSCDDRADLFVDVKRALQPLGLEVVGSEVTTLGGRVRLAFLVSCGSRGGAAAAAMASVRHALQSVLDKASSGFDFAPRAASLLGSKRRKVSTFESSSSSS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.039469 | 1.218198 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0218100 | RBH | 1.870833 | 1.638660 | 0.817212 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g11910 | RBH | 1.226390 | 1.068365 | 0.204328 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0218100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0008480 | RBH | 0.000000 | 76.436974 | 1.794081 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0008120 | RBH | 0.020267 | 12.292935 | 0.304797 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0008500 | RBH | 0.605675 | 37.123955 | 1.587002 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0008020 | RBH | 0.176810 | 0.211839 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0008120 | RBH | 0.000000 | 30.795454 | 1.615931 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0106100 | RBH | 1.039039 | 62.3940635 | 0.975277 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0008090 | RBH | 0.0 | 2.757589 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0105900 | RBH | 2.199671 | 35.5237865 | 0.5398715 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0008120 | RBH | 0.087273 | 14.641392 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0008100 | RBH | 1.824568 | 57.242184 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0008150 | RBH | 0.172064 | 6.075658 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0008010 | RBH | 0.056545 | 19.367037 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G008120 | RBH | 0.000000 | 1.106254 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0007970 | RBH | 0.0 | 61.021324 | 0.367642 |
