Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_01g0008090 | OGI:01023350 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr01:6408178-6411643 | ||||||||
| Gene Symbol | OsEnS-3 | ||||||||||
| DNA seq | attgccctctctcagctcccaaaaatctcactcatgtttgattgctttagttattctccatcaagaggttgaaggctaaactactcttagttcaatgtttaactaaacatatccatacccatcactttggtaagtatcatttatgtgccacactatatatgtatatgcacgtcatttattttattggccacttttctagaaatcttaacccccttttcttacaaattcatgtgttgatgggtatattctgtggatttttattattatttggcatttattatggaggatggattcgaaggtaacatgtagagtaaaatacattgttggtccttaaagTtgttgtgtgatgtcatactagtccctaaactttgaaaatggagtttgagaggaggggggggggagagagagagagagagagagagacggtaaccacaccagtattagaaggagtatttggtattttaataagattaggatgtgtactttttttctcaaagttaagggatcaacatggcactatgcaacaagtttagggagcacttctagtgtattttaatctttacttaaatgtgggaaaattatgtcttttaagtacactgtaggtcttgtgggagctacttttatggatgtgcctttttgtgtggcaacactatgttcaatttatttaggatattgtgcttatgtagtgtgattaaaatgatcaaatcaaaattgtgattgatgtcctaacacatactcctttgtcccaaaaaaaccccccaatcctagggatgtatctggacaacgtgtatgtctagatatatatctaggattggacttttttttggacggatggagtactactttAattaatttcacaataactatatttggaattcgaaatgcaaagttcctttatctatgttcttacgactatttctcttcatgtagttgatttctggagatggcttccaagatattgtaattaaaaacacatccctcacagcttccatagacgctactaaaagtttgtggtgcatatcaaagaaactattgttgacaagagcatggcatcaacaggcattgcagtgagcccaagcaacaacgatgctttggacctagctgatgcacaattagatggtgatcaatcttcatatcatcatacaccagaggtcttcttactctaccttgcagttcctggtgttcctctagccaaaatgcaagtgcttgagtctgattcggttgccacagtgaagcttcggatccaaaacagcaaaggatttgtggcgagaaaccaaaggttggTttttgaaggcagagagctctctcgcaatgatagccatatccgtgactatggggtgaggtatggaagtgtgcttcatctcgtgatccgactatcagatccacggcgaaccgctgtgaggactgtttatggaaggaagtttaaattccaagtggaccaatgtcgaaatgctagatatatgaagcaagagatttcaagaaattttgaaagtcccaatggtattggagagagcgtgactttggtcaatggtgaaaagcttgatgaaagcacattaatctccaccatttgtgagaccaacacttctgataccgattttcttgcaaacaagtcagaaaattttaatggaaatgAaatagaagaatcttttgagcaattatccatttcttctgacattggaaataatttacaatttgatgatgccaaggagaaatatcccttgattgaaccagttcttgtcaacccaagtgttacccttactccaaaaattacgggtatgatcgaagctacacttgctgggctagaaatggagcacacacctgtgatgtcctcagagggcactGggggagtctacttcatgctagattcatcaggccaagagtatgttgctgttttcaagccaataaatgaagagccaatggcaaaggacaatcctaatggctaccctttgtccagtgatggggaaggattaaagagaggaacaagagtcggtgaaggtgcattcagggaggttgcagcatacattcttgaccatcctattagtggttatcgcgtgagcgatgaactagggtttgctggtgttcctccgacagttcttgttcgatgtttgaatggttatgttgatcagactaagtatgactgcgcggagaaagaaccgaaaattgggtccttgcaaatgtttgtgaagaattctGggagttgtgaggagtttggtcctagggctttccctgtgcaagaggtgcacaagattgctgttttggatatgaggctagctaacgcggatcgccatggcggcaacatactgattcgtaaggatgagaatgggcagattgagttgataccaattgatcatgggtattgtctgcctgaaagcgtaagtattttgttttgctttgaattgcattttttgtattgAaaattgaaatctatgatcacccatagtcactaatcgccataaagagttgctcactccatgtcaaaatataagctgtataagtttcttacaccgtcttcagtgcaaaactttgacctttaattccttgtatagtattaatatcaacaactataaaattgacataacgtgaatgtactttcaaattcaaatcttatgatgccatatgcttgatgctaaacatatgtaccgctagttcaattattagtcaatgtttgcaaatgttggcttcctaaaattgcgggaggcttatatttcaggatagagggagtaattttcacgaccacacactatgtacacattttaatataatatccattgctaaattttctgtcctaatttggttactagcaatgattgttttctcatgttgtaaacaatgtttgaactatttcagttttagtaattgatttgacttctaaacaatttacagtttgaagactgcacatttgattggctttactggccccaagcatgccagcctttcaatgttgaaaccctggactacataaagtcacttgacgaggaagaggatatcaagttgctcaaactcaatggttgtgaaccatcatctaagtgtgttcgtgtttttcgtctaagcaccatgatgttgaagaagggtgctgtgagaggtctaactccatatgagatcggtaacatgttgtgtagggagaacattacaaccaaatcaaagattgaAGagattgttgaagaggcagaggatgttgttcttcctgggataggtgaaaaggcattcatggaagccatctcaggtatcatggatcgccatctcaatgaactcttcaaatgaaatgctcctcaagatgactgtgaattatggtttcgagtgtgtgtgataagtgaatttgtaagtaatgtaagtctcttttgtgtcaagatatcgcctccatgaataataaggaaggatcattggtccttcttacatttctcgatgtaaattgtaaatgaATataagtgaagaatgttgtaaattaatggattgtgtatatctcacc
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| CDS seq | atggcatcaacaggcattgcagtgagcccaagcaacaacgatgctttggacctagctgatgcacaattagatggtgatcaatcttcatatcatcatacaccagaggtcttcttactctaccttgcagttcctggtgttcctctagccaaaatgcaagtgcttgagtctgattcggttgccacagtgaagcttcggatccaaaacagcaaaggatttgtggcgagaaaccaaaggttggTttttgaaggcagagagctctctcgcaatgatagccatatccgtgactatggggtgaggtatggaagtgtgcttcatctcgtgatccgactatcagatccacggcgaaccgctgtgaggactgtttatggaaggaagtttaaattccaagtggaccaatgtcgaaatgctagatatatgaagcaagagatttcaagaaattttgaaagtcccaatggtattggagagagcgtgactttggtcaatggtgaaaagcttgatgaaagcacattaatctccaccatttgtgagaccaacacttctgataccgattttcttgcaaacaagtcagaaaattttaatggaaatgAaatagaagaatcttttgagcaattatccatttcttctgacattggaaataatttacaatttgatgatgccaaggagaaatatcccttgattgaaccagttcttgtcaacccaagtgttacccttactccaaaaattacgggtatgatcgaagctacacttgctgggctagaaatggagcacacacctgtgatgtcctcagagggcactGggggagtctacttcatgctagattcatcaggccaagagtatgttgctgttttcaagccaataaatgaagagccaatggcaaaggacaatcctaatggctaccctttgtccagtgatggggaaggattaaagagaggaacaagagtcggtgaaggtgcattcagggaggttgcagcatacattcttgaccatcctattagtggttatcgcgtgagcgatgaactagggtttgctggtgttcctccgacagttcttgttcgatgtttgaatggttatgttgatcagactaagtatgactgcgcggagaaagaaccgaaaattgggtccttgcaaatgtttgtgaagaattctGggagttgtgaggagtttggtcctagggctttccctgtgcaagaggtgcacaagattgctgttttggatatgaggctagctaacgcggatcgccatggcggcaacatactgattcgtaaggatgagaatgggcagattgagttgataccaattgatcatgggtattgtctgcctgaaagctttgaagactgcacatttgattggctttactggccccaagcatgccagcctttcaatgttgaaaccctggactacataaagtcacttgacgaggaagaggatatcaagttgctcaaactcaatggttgtgaaccatcatctaagtgtgttcgtgtttttcgtctaagcaccatgatgttgaagaagggtgctgtgagaggtctaactccatatgagatcggtaacatgttgtgtagggagaacattacaaccaaatcaaagattgaAGagattgttgaagaggcagaggatgttgttcttcctgggataggtgaaaaggcattcatggaagccatctcaggtatcatggatcgccatctcaatgaactcttcaaatga
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| Protein seq | MASTGIAVSPSNNDALDLADAQLDGDQSSYHHTPEVFLLYLAVPGVPLAKMQVLESDSVATVKLRIQNSKGFVARNQRLVFEGRELSRNDSHIRDYGVRYGSVLHLVIRLSDPRRTAVRTVYGRKFKFQVDQCRNARYMKQEISRNFESPNGIGESVTLVNGEKLDESTLISTICETNTSDTDFLANKSENFNGNEIEESFEQLSISSDIGNNLQFDDAKEKYPLIEPVLVNPSVTLTPKITGMIEATLAGLEMEHTPVMSSEGTGGVYFMLDSSGQEYVAVFKPINEEPMAKDNPNGYPLSSDGEGLKRGTRVGEGAFREVAAYILDHPISGYRVSDELGFAGVPPTVLVRCLNGYVDQTKYDCAEKEPKIGSLQMFVKNSGSCEEFGPRAFPVQEVHKIAVLDMRLANADRHGGNILIRKDENGQIELIPIDHGYCLPESFEDCTFDWLYWPQACQPFNVETLDYIKSLDEEEDIKLLKLNGCEPSSKCVRVFRLSTMMLKKGAVRGLTPYEIGNMLCRENITTKSKIEEIVEEAEDVVLPGIGEKAFMEAISGIMDRHLNELFK |
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| Function | Phosphatidylinositol 4-kinase gamma 4 [UniProtKB/Swiss-Prot:Q9ZPY9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0008090 | OsLima_01g0008090.01 | Chr01 | 6408178 | 6411438 | + | NAM | ||
| CDS seq | atgcaagtgcttgagtctgattcggttgccacagtgaagcttcggatccaaaacagcaaaggatttgtggcgagaaaccaaaggttggTttttgaaggcagagagctctctcgcaatgatagccatatccgtgactatggggtgaggtatggaagtgtgcttcatctcgtgatccgactatcagatccacggcgaaccgctgtgaggactgtttatggaaggaagtttaaattccaagtggaccaatgtcgaaatgctagatatatgaagcaagagatttcaagaaattttgaaagtcccaatggtattggagagagcgtgactttggtcaatggtgaaaagcttgatgaaagcacattaatctccaccatttgtgagaccaacacttctgataccgattttcttgcaaacaagtcagaaaattttaatggaaatgAaatagaagaatcttttgagcaattatccatttcttctgacattggaaataatttacaatttgatgatgccaaggagaaatatcccttgattgaaccagttcttgtcaacccaagtgttacccttactccaaaaattacgggtatgatcgaagctacacttgctgggctagaaatggagcacacacctgtgatgtcctcagagggcactGggggagtctacttcatgctagattcatcaggccaagagtatgttgctgttttcaagccaataaatgaagagccaatggcaaaggacaatcctaatggctaccctttgtccagtgatggggaaggattaaagagaggaacaagagtcggtgaaggtgcattcagggaggttgcagcatacattcttgaccatcctattagtggttatcgcgtgagcgatgaactagggtttgctggtgttcctccgacagttcttgttcgatgtttgaatggttatgttgatcagactaagtatgactgcgcggagaaagaaccgaaaattgggtccttgcaaatgtttgtgaagaattctGggagttgtgaggagtttggtcctagggctttccctgtgcaagaggtgcacaagattgctgttttggatatgaggctagctaacgcggatcgccatggcggcaacatactgattcgtaaggatgagaatgggcagattgagttgataccaattgatcatgggtattgtctgcctgaaagctttgaagactgcacatttgattggctttactggccccaagcatgccagcctttcaatgttgaaaccctggactacataaagtcacttgacgaggaagaggatatcaagttgctcaaactcaatggttgtgaaccatcatctaagtgtgttcgtgtttttcgtctaagcaccatgatgttgaagaagggtgctgtgagaggtctaactccatatgagatcggtaacatgttgtgtagggagaacattacaaccaaatcaaagattgaAGagattgttgaagaggcagaggatgttgttcttcctgggataggtgaaaaggcattcatggaagccatctcaggtatcatggatcgccatctcaatgaactcttcaaatga
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| Protein seq | MQVLESDSVATVKLRIQNSKGFVARNQRLVFEGRELSRNDSHIRDYGVRYGSVLHLVIRLSDPRRTAVRTVYGRKFKFQVDQCRNARYMKQEISRNFESPNGIGESVTLVNGEKLDESTLISTICETNTSDTDFLANKSENFNGNEIEESFEQLSISSDIGNNLQFDDAKEKYPLIEPVLVNPSVTLTPKITGMIEATLAGLEMEHTPVMSSEGTGGVYFMLDSSGQEYVAVFKPINEEPMAKDNPNGYPLSSDGEGLKRGTRVGEGAFREVAAYILDHPISGYRVSDELGFAGVPPTVLVRCLNGYVDQTKYDCAEKEPKIGSLQMFVKNSGSCEEFGPRAFPVQEVHKIAVLDMRLANADRHGGNILIRKDENGQIELIPIDHGYCLPESFEDCTFDWLYWPQACQPFNVETLDYIKSLDEEEDIKLLKLNGCEPSSKCVRVFRLSTMMLKKGAVRGLTPYEIGNMLCRENITTKSKIEEIVEEAEDVVLPGIGEKAFMEAISGIMDRHLNELFK
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0008090 | OsLima_01g0008090.02 | Chr01 | 6408185 | 6411643 | + | NAM | ||
| CDS seq | atggcatcaacaggcattgcagtgagcccaagcaacaacgatgctttggacctagctgatgcacaattagatggtgatcaatcttcatatcatcatacaccagaggtcttcttactctaccttgcagttcctggtgttcctctagccaaaatgcaagtgcttgagtctgattcggttgccacagtgaagcttcggatccaaaacagcaaaggatttgtggcgagaaaccaaaggttggTttttgaaggcagagagctctctcgcaatgatagccatatccgtgactatggggtgaggtatggaagtgtgcttcatctcgtgatccgactatcagatccacggcgaaccgctgtgaggactgtttatggaaggaagtttaaattccaagtggaccaatgtcgaaatgctagatatatgaagcaagagatttcaagaaattttgaaagtcccaatggtattggagagagcgtgactttggtcaatggtgaaaagcttgatgaaagcacattaatctccaccatttgtgagaccaacacttctgataccgattttcttgcaaacaagtcagaaaattttaatggaaatgAaatagaagaatcttttgagcaattatccatttcttctgacattggaaataatttacaatttgatgatgccaaggagaaatatcccttgattgaaccagttcttgtcaacccaagtgttacccttactccaaaaattacgggtatgatcgaagctacacttgctgggctagaaatggagcacacacctgtgatgtcctcagagggcactGggggagtctacttcatgctagattcatcaggccaagagtatgttgctgttttcaagccaataaatgaagagccaatggcaaaggacaatcctaatggctaccctttgtccagtgatggggaaggattaaagagaggaacaagagtcggtgaaggtgcattcagggaggttgcagcatacattcttgaccatcctattagtggttatcgcgtgagcgatgaactagggtttgctggtgttcctccgacagttcttgttcgatgtttgaatggttatgttgatcagactaagtatgactgcgcggagaaagaaccgaaaattgggtccttgcaaatgtttgtgaagaattctGggagttgtgaggagtttggtcctagggctttccctgtgcaagaggtgcacaagattgctgttttggatatgaggctagctaacgcggatcgccatggcggcaacatactgattcgtaaggatgagaatgggcagattgagttgataccaattgatcatgggtattgtctgcctgaaagctttgaagactgcacatttgattggctttactggccccaagcatgccagcctttcaatgttgaaaccctggactacataaagtcacttgacgaggaagaggatatcaagttgctcaaactcaatggttgtgaaccatcatctaagtgtgttcgtgtttttcgtctaagcaccatgatgttgaagaagggtgctgtgagaggtctaactccatatgagatcggtaacatgttgtgtagggagaacattacaaccaaatcaaagattgaAGagattgttgaagaggcagaggatgttgttcttcctgggataggtgaaaaggcattcatggaagccatctcaggtatcatggatcgccatctcaatgaactcttcaaatga
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| Protein seq | MASTGIAVSPSNNDALDLADAQLDGDQSSYHHTPEVFLLYLAVPGVPLAKMQVLESDSVATVKLRIQNSKGFVARNQRLVFEGRELSRNDSHIRDYGVRYGSVLHLVIRLSDPRRTAVRTVYGRKFKFQVDQCRNARYMKQEISRNFESPNGIGESVTLVNGEKLDESTLISTICETNTSDTDFLANKSENFNGNEIEESFEQLSISSDIGNNLQFDDAKEKYPLIEPVLVNPSVTLTPKITGMIEATLAGLEMEHTPVMSSEGTGGVYFMLDSSGQEYVAVFKPINEEPMAKDNPNGYPLSSDGEGLKRGTRVGEGAFREVAAYILDHPISGYRVSDELGFAGVPPTVLVRCLNGYVDQTKYDCAEKEPKIGSLQMFVKNSGSCEEFGPRAFPVQEVHKIAVLDMRLANADRHGGNILIRKDENGQIELIPIDHGYCLPESFEDCTFDWLYWPQACQPFNVETLDYIKSLDEEEDIKLLKLNGCEPSSKCVRVFRLSTMMLKKGAVRGLTPYEIGNMLCRENITTKSKIEEIVEEAEDVVLPGIGEKAFMEAISGIMDRHLNELFK
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr01 | 6408306 | 6409237 | + | OsLima_01g0008090.02 | OsLima_01g0008090.02,OsLima_01g0008090.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0234850 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g13360 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0234850 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0009650 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0009290 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0009630 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0009170 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0009210 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0121500 | RBH | 1.809649 | 6.703088 | 7.4152355 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0009220 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0121300 | RBH | 1.970477 | 4.132758 | 3.9907455 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0013000 | RBH | 0.094391 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0009250 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0009200 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0009330 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0009130 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G009280 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0009160 | RBH | 0.0 | 0.0 | 0.0 |
