Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_01g0006270 | OGI:01016680 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr01:4769559-4771550 | ||||||||
| Gene Symbol | DOS, OsDOS, OsC3H2, C3H2, OsTZF2, OsCCCH-Zn-4 | ||||||||||
| DNA seq | taatgaaacATatagcaacataatattattggatcatttacatgaagcaggtgattacaatacattgaggggggcttcatcaccacatataggtagatgagtcagcaaaagattttcagatttaaagctaaggtacaaaatatgctgttgggggttcttaacaaaacaaagattacatcaacaaaataggaaatcaacaagagggggggcttgattgaaatcgatcgatgatcttcatcagctagtcgatgatgcaacaaacgatGaacagaggataaacccccagaaatcactgaaataggcagggccgccgccgcgacggcggccgaaatccggccatcttcttccgccatgatcttcttccttccgtgcttccttcacctccacacaccctatgcacacaggagacactgaaccaccttcatttctactcctcTtttttttttcacctaatttttttgtgggtaattttgctactacctcaaaaccccaaaacaaatccacccatctttccatacttgcctcctctccaccaaccatgaatattcacatgggagatagatatgtacaggaattagtagaaacttgacttgaaatcacaaaagaaaatgaaggattttttggtcgtgccatcattttcttcttaccgccaccttctcctcctccatgccatcatccttgatgctcacaaaaggggcttccaatagcgacttggaagcctcagttgatgaggtcggacacccaatcaacgtcgaggccaacaccggcggtggcgaaggcggtggcgtcgccgtagatggcaccatcccggctcagtcgctcgaacaccttctcccggagggctcttccggactccaccctctggaccggctcctcgtcgccgatgagcccgaggtccagtggctccaggttgggcatgaagctggaggcggtggtcaccgttgccgtggaagccagtggagtggtggggaggctgtagaggccggtggcggccttgggagacccgtagacggcggacgacgaagggtagctccacccgccggacggcgacgacttcaccttgttgaggcggagctggcggaacgaggccaggacgtcgttcaccggcgagccgacaccgggccaagatccgcgacggatggccgcggcaccgtcgggcgacaatggcggggactccgacgggggcgacttgggcggagacatgagggtgctggtcggggacgaggacatgatggtcttggtgaggtagctctcgaacgcctggcggcgcagtggcgagccgtcgtaggactcggccagcggcgaggacgccacgctcctggggctggactgctgcgccgggaggacgcggagctggtccggggtgtgggcgaagaagcagacgcggcggcggcaggcggtgccgtccttgcacggctgggtgcggtagcgcgccgggtggagccaacactcaaacacgccgtgggcgtactcgcaggcgtcgccgcgcttgcacccgcccttgcggaagtccgggcacgcggtgccggagtagtggtacttgcgcggatcgcggcggcgcgccttctcccccgggtgcgcgaaggggcactcggtccagtcatggctccgcccgcgcgcgcaccgccgcaccttgaactcgtacatccggaactcgtcgcacgcgtacgcgtccaccgccgcggccatcgccgcggcctcctcctcctcgtcagcccccaccccgacatcattcgccggcaggtaatcccgcagcgcggcgatcacgtacggcgtcatctcatccccaccgccaccaccgccgccgagcacatcgactccgctcacggggaggtgagaccacggcGggacgctgctgactccttcccccatcatcatcatggccaccgccggcggcaacacgacctccgatcaaccggtgtatggactacggcgagatctcgtggactaggcgtatggacgcgagtaagagagtggtgcgatgtgtaaggc
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| CDS seq | atgtcctcgtccccgaccagcaccctcatgtctccgcccaagtcgcccccgtcggagtccccgccattgtcgcccgacggtgccgcggccatccgtcgcggatcttggcccggtgtcggctcgccggtgaacgacgtcctggcctcgttccgccagctccgcctcaacaaggtgaagtcgtcgccgtccggcgggtggagctacccttcgtcgtccgccgtctacgggtctcccaaggccgccaccggcctctacagcctccccaccactccactggcttccacggcaacggtgaccaccgcctccagcttcatgcccaacctggagccactggacctcgggctcatcggcgacgaggagccggtccagagggtggagtccggaagagccctccgggagaaggtgttcgagcgactgagccgggatggtgccatctacggcgacgccaccgccttcgccaccgccggtgttggcctcgacgttgattgggtgtccgacctcatcaactga
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| Protein seq | MSSSPTSTLMSPPKSPPSESPPLSPDGAAAIRRGSWPGVGSPVNDVLASFRQLRLNKVKSSPSGGWSYPSSSAVYGSPKAATGLYSLPTTPLASTATVTTASSFMPNLEPLDLGLIGDEEPVQRVESGRALREKVFERLSRDGAIYGDATAFATAGVGLDVDWVSDLIN |
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| Function | Zinc finger CCCH domain-containing protein 2 [UniProtKB/Swiss-Prot:Q9FU27] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0006270 | OsLima_01g0006270.02 | Chr01 | 4769560 | 4770846 | - | NAM | ||
| CDS seq | atgtcctcgtccccgaccagcaccctcatgtctccgcccaagtcgcccccgtcggagtccccgccattgtcgcccgacggtgccgcggccatccgtcgcggatcttggcccggtgtcggctcgccggtgaacgacgtcctggcctcgttccgccagctccgcctcaacaaggtgaagtcgtcgccgtccggcgggtggagctacccttcgtcgtccgccgtctacgggtctcccaaggccgccaccggcctctacagcctccccaccactccactggcttccacggcaacggtgaccaccgcctccagcttcatgcccaacctggagccactggacctcgggctcatcggcgacgaggagccggtccagagggtggagtccggaagagccctccgggagaaggtgttcgagcgactgagccgggatggtgccatctacggcgacgccaccgccttcgccaccgccggtgttggcctcgacgttgattgggtgtccgacctcatcaactga
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| Protein seq | MSSSPTSTLMSPPKSPPSESPPLSPDGAAAIRRGSWPGVGSPVNDVLASFRQLRLNKVKSSPSGGWSYPSSSAVYGSPKAATGLYSLPTTPLASTATVTTASSFMPNLEPLDLGLIGDEEPVQRVESGRALREKVFERLSRDGAIYGDATAFATAGVGLDVDWVSDLIN |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0006270 | OsLima_01g0006270.01 | Chr01 | 4769559 | 4770846 | - | NAM | ||
| CDS seq | atgtcctcgtccccgaccagcaccctcatgtctccgcccaagtcgcccccgtcggagtccccgccattgtcgcccgacggtgccgcggccatccgtcgcggatcttggcccggtgtcggctcgccggtgaacgacgtcctggcctcgttccgccagctccgcctcaacaaggtgaagtcgtcgccgtccggcgggtggagctacccttcgtcgtccgccgtctacgggtctcccaaggccgccaccggcctctacagcctccccaccactccactggcttccacggcaacggtgaccaccgcctccagcttcatgcccaacctggagccactggacctcgggctcatcggcgacgaggagccggtccagagggtggagtccggaagagccctccgggagaaggtgttcgagcgactgagccgggatggtgccatctacggcgacgccaccgccttcgccaccgccggtgttggcctcgacgttgattgggtgtccgacctcatcaactga
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| Protein seq | MSSSPTSTLMSPPKSPPSESPPLSPDGAAAIRRGSWPGVGSPVNDVLASFRQLRLNKVKSSPSGGWSYPSSSAVYGSPKAATGLYSLPTTPLASTATVTTASSFMPNLEPLDLGLIGDEEPVQRVESGRALREKVFERLSRDGAIYGDATAFATAGVGLDVDWVSDLIN |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0006270 | OsLima_01g0006270.03 | Chr01 | 4769560 | 4771550 | - | IsoSeq | ||
| CDS seq | atggttggtggagaggaggcaagtatggaaagatgggtggatttgttttggggttttgaggtagtagcaaaattacccacaaaaaaattaggtgaaaaaaaaaAgaggagtagaaatgaaggtggttcagtgtctcctgtgtgcatagggtgtgtggaggtgaaggaagcacggaaggaagaagatcatggcggaagaagatggccggatttcggccgccgtcgcggcggcggccctgcctatttcagtgatttctgggggtttatcctctgttCatcgtttgttgcatcatcgact
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| Protein seq | MVGGEEASMERWVDLFWGFEVVAKLPTKKLGEKKKRSRNEGGSVSPVCIGCVEVKEARKEEDHGGRRWPDFGRRRGGGPAYFSDFWGFILCSSFVASST |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A5 | Chr01 | 4769950 | 4770039 | - | OsLima_01g0006270.02 | OsLima_01g0006270.02,OsLima_01g0006270.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.119455 | 0.539966 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0192000 | RBH | 1.329226 | 3.790329 | 11.278712 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g09620 | RBH | 0.394516 | 0.727842 | 2.779130 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0192000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0006870 | RBH | 0.095996 | 13.971193 | 11.648293 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0006510 | RBH | 1.754930 | 7.521312 | 8.268930 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0006820 | RBH | 0.662436 | 13.465049 | 10.925645 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0006340 | RBH | 0.018012 | 0.425612 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0006510 | RBH | 1.051567 | 16.606842 | 28.949604 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0082700 | RBH | 15.284812 | 162.4971465 | 556.6466675 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0006470 | RBH | 0.139472 | 0.877534 | 2.627095 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0083900 | RBH | 20.4260765 | 85.011219 | 28.0352105 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0006470 | RBH | 0.446321 | 11.131276 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0006520 | RBH | 0.0 | 32.309334 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0006480 | RBH | 0.541294 | 0.604397 | 2.733561 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0006430 | RBH | 0.523946 | 8.176402 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G006480 | RBH | 0.367737 | 2.330462 | 10.656739 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0006370 | RBH | 2.011729 | 110.064621 | 32.828682 |
