Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_01g0006260 | OGI:01016570 | 15/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr01:4749147-4750484 | ||||||||
| Gene Symbol | R2R3-MYB | ||||||||||
| DNA seq | gagtctaaacgaacatgtagataccacatttgaagcacagcaaaatactagtagtagctttttgttcatagcaagtgatctaactttgcacctgatgaaTtttctcatgttcaagtacactacacgcttcttgtaattacgcgatgtttgatcgatcgaccaatctcgcaggaacacgcggagatgtGgcatgtactgatcctaacactagtgtttgatctttgaaacgcacgagttcactacactagtgatgatgacaagctcggatcgagagggtagtagtagccgccgccgatgaagtggtcgtcctccgccgtggcggcgccggcgaggtcgtcggagctcatgcagaattccgggaacagcccgccgccgccgccaccgacgacgacgacgccggtgtccgccgaccagttggaCcccgacgacgcggcggaggcggacgtcgagccgccgtccgtggcggcgccgtcggcgaagggatcccggagcgccGTggcggcggtggcggtcggcagcagctgctgcaggaagtcgtcgcaggtgtacgcctcggtcttgacggtcggtacggcgagcggcgggaggagcagcagcgacgacgacggcgacgtgtgcgtggcggcgaggggcggcggcgccgggagcggcagtaagggcgtgcaggcggcggcggcggcgaggcggcgcttgagcttggtgttccagtggttcttgacgtcgttgtccgTCCtcctctccagctgcgccgcgatggtcgaccacctggaaggaatcaatcagtcagttaccgccatggcaagAagagagagaGggagagagagaggtttaattaacttacttgctgccgagcttggagtagagggagatgatgatggcgtcctcctcgtcggtgaaggcgccatggcggatgtcggggcggaggtagttgagccaccgcagcctgcagctcttgccgcacctcctcaaccctacaaaacaaaaaagaagacaattcaattcaattcatcgtcagaaatcaagaagagtagtggccatatcatgcaggatgatgagaagacatggactgaccggccttgttggggagggagatccagttgccggcggtgccgtggcggttgatgtagtcgcgcagcgcgtcgtcctcctccggcgaccacgggcccctcttcaccgcctccctgtcgcagcacggcgtcctccccatcctccacacacaccaacacaacacctcctcgatctcctctggatgacaagggagggacaagaagacgcaagcaagaagtggaggctacttgtattgtattgtacccgcgccgtgtcctgtcctcttgctgt
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| CDS seq | atggggaggacgccgtgctgcgacagggaggcggtgaagaggggcccgtggtcgccggaggaggacgacgcgctgcgcgactacatcaaccgccacggcaccgccggcaactggatctccctccccaacaaggccgggttgaggaggtgcggcaagagctgcaggctgcggtggctcaactacctccgccccgacatccgccatggcgccttcaccgacgaggaggacgccatcatcatctccctctactccaagctcggcagcaagtggtcgaccatcgcggcgcagctggagaggaGGAcggacaacgacgtcaagaaccactggaacaccaagctcaagcgccgcctcgccgccgccgccgcctgcacgcccttactgccgctcccggcgccgccgcccctcgccgccacgcacacgtcgccgtcgtcgtcgctgctgctcctcccgccgctcgccgtaccgaccgtcaagaccgaggcgtacacctgcgacgacttcctgcagcagctgctgccgaccgccaccgccgccACggcgctccgggatcccttcgccgacggcgccgccacggacggcggctcgacgtccgcctccgccgcgtcgtcgggGtccaactggtcggcggacaccggcgtcgtcgtcgtcggtggcggcggcggcgggctgttcccggaattctgcatgagctccgacgacctcgccggcgccgccacggcggaggacgaccacttcatcggcggcggctactactaccctctcgatccgagcttgtcatcatcactagtgtag
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| Protein seq | MGRTPCCDREAVKRGPWSPEEDDALRDYINRHGTAGNWISLPNKAGLRRCGKSCRLRWLNYLRPDIRHGAFTDEEDAIIISLYSKLGSKWSTIAAQLERRTDNDVKNHWNTKLKRRLAAAAACTPLLPLPAPPPLAATHTSPSSSLLLLPPLAVPTVKTEAYTCDDFLQQLLPTATAATALRDPFADGAATDGGSTSASAASSGSNWSADTGVVVVGGGGGGLFPEFCMSSDDLAGAATAEDDHFIGGGYYYPLDPSLSSSLV |
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| Function | Transcription factor RAX2 [UniProtKB/Swiss-Prot:Q9SJL7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0006260 | OsLima_01g0006260.01 | Chr01 | 4749147 | 4750484 | - | NAM | ||
| CDS seq | atggggaggacgccgtgctgcgacagggaggcggtgaagaggggcccgtggtcgccggaggaggacgacgcgctgcgcgactacatcaaccgccacggcaccgccggcaactggatctccctccccaacaaggccgggttgaggaggtgcggcaagagctgcaggctgcggtggctcaactacctccgccccgacatccgccatggcgccttcaccgacgaggaggacgccatcatcatctccctctactccaagctcggcagcaagtggtcgaccatcgcggcgcagctggagaggaGGAcggacaacgacgtcaagaaccactggaacaccaagctcaagcgccgcctcgccgccgccgccgcctgcacgcccttactgccgctcccggcgccgccgcccctcgccgccacgcacacgtcgccgtcgtcgtcgctgctgctcctcccgccgctcgccgtaccgaccgtcaagaccgaggcgtacacctgcgacgacttcctgcagcagctgctgccgaccgccaccgccgccACggcgctccgggatcccttcgccgacggcgccgccacggacggcggctcgacgtccgcctccgccgcgtcgtcgggGtccaactggtcggcggacaccggcgtcgtcgtcgtcggtggcggcggcggcgggctgttcccggaattctgcatgagctccgacgacctcgccggcgccgccacggcggaggacgaccacttcatcggcggcggctactactaccctctcgatccgagcttgtcatcatcactagtgtag
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| Protein seq | MGRTPCCDREAVKRGPWSPEEDDALRDYINRHGTAGNWISLPNKAGLRRCGKSCRLRWLNYLRPDIRHGAFTDEEDAIIISLYSKLGSKWSTIAAQLERRTDNDVKNHWNTKLKRRLAAAAACTPLLPLPAPPPLAATHTSPSSSLLLLPPLAVPTVKTEAYTCDDFLQQLLPTATAATALRDPFADGAATDGGSTSASAASSGSNWSADTGVVVVGGGGGGLFPEFCMSSDDLAGAATAEDDHFIGGGYYYPLDPSLSSSLV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.308859 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0191900 | RBH | 1.158814 | 1.374911 | 4.133206 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g09590 | RBH | 0.803388 | 0.864416 | 1.050879 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0191900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0006850 | RBH | 0.238327 | 31.359070 | 2.465339 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0006490 | RBH | 0.195485 | 4.342394 | 1.501910 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0006800 | RBH | 1.033320 | 3.642756 | 4.961600 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0006330 | RBH | 0.061011 | 0.352581 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0006500 | RBH | 2.419664 | 20.208204 | 7.063904 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0082600 | RBH | 3.170671 | 46.7743875 | 3.324656 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0006450 | RBH | 0.000000 | 0.596274 | 0.106063 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0063700 | SBH | 0 | 0.0299805 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0006460 | RBH | 0.0 | 6.585743 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0006510 | RBH | 0.0 | 29.257191 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0006460 | RBH | 0.000000 | 0.400600 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0006420 | RBH | 0.0 | 9.317583 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G006460 | RBH | 0.000000 | 1.219108 | 0.610745 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0006360 | RBH | 0.0 | 21.774649 | 1.010993 |
