Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_01g0005460 | OGI:01015000 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr01:4102934-4105208 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | agagaacaaatccaatccaacacataagaagaacaactctcaagaatccatactaaataataataagaattgaatagccagaagtaattgtgatacagaaggaagaaatgacacagaatccttttgttctaaaacttatgtcttactactactgaatttaactgaactgaactcatgattctcatctatacaaccacatatatccctgcacctacaatcctctgccaaaccctcctgtccctctcaaacttttccttattattcacaacccaattagccatcaatcatatgttcccaaatcctccaaatCcccacacccccaccacttcccaatccctttcaacaccacagcaacacaaactgtttcgatgctgacgccgacaaatcataaccaaacaaaattttgtgcaccttactacgctcttcacgccggtagtcatcaatcaaccaaccaagaacactagtagctaataagaacgataatgaccacgtatacttgtgtgcgacttccgctgctgtcgatttgccggatgtgaggagcaagagcggaacacatgcatgtttccaaacattcttcggagaaattctatcaatgcagcgggggaggaggtggtgatccatatggtacgctgtggatcggtggccatgagctgtggtgttgcagagggggaggtggtggtgagccatatggtactccatggacaggtggccatggcccggggtagtaaggtggtggtggtggtggtgacaatgctggtgttgcgccgccgcagggtggcggtggcggtggtggtggcggcagctccggacatggcggatgcggttgtggcgcgggtggtggcggcggcggcggcggctgcggtgggtggaagattggtgcaggcggtggaggcgatggtggcggtggagatggcggtggtggtgaaggcggaggcggtgatgtcgacggtggcggtggggatggcggcggtggcgaaggcggcggcggtgatggtggtggcggcgatggtggcggcagggccgggacgaacggcttgcactggaacgcggcgcagttgacgggagggcgcgcgaagaacgcggcgcactgccgcagcgtccgctgggcggggcggttgggcaggcagttcctccggtcgccgtagcgcggcacggcgcgcgcgcaggacggcggctcgccggtgaagaagttgtacgcgaaggtgaagttcttgaggcgcggcagctcgcacaccgcctgcggtatcgcccccgtgagcaggttgtgcgcgacgtcgagctgctccaccttcctcatcccggccaccgccgacggcagcgggccggcgagccggttgaagctcacgtcgaacaccgtcacctcccgcagcatcccgacctccggcggcaggcaggagctgaggcccgtgttgatgagcaagatctcgttgagcgtcccggacatgttgccgaggctcgccgggaggcagccgccgaagctgttgtgcgcgaggacgatgacggagaccggcgagttgccgaagttgtccgggaggtcgaagcggaagcggttgtggttgaggaagatggcgtcgagcggccggtcgaacagctggcggggcaccccgccctcgaagtcgttgaagcggaggtcgaggaaccggagcgcgggcatgtcgagcaccacctcggggaacctcccgacgaagcggttgttgctgaggtcgagctcgtgtaggaggcggaggcggcggagggtggccgggagcacgccgcagaagcggttggagttgaggtggagcagcgcgaggtcggcgagcaggccgagctcggggggcaggtacccggcgatgtcgccgtggttgaggtcgacgccggcgacggcgacctcccggcgatcccacggcagcggcgcgcagaacacgccggtgtagttgcaaacgtcggggcccacccagtcggcggtgaggttgccggggtcggagaagatggcctcccgcctccacgtctgcagcgccacgtacgcgtcccgcatcctcgagctcggaaaccgccactccgccgccacaccaccaccaccatcgccgccgtccaaatccgccgccgccgccaccgccccaccggcgacggcaacggcgaacacaacgagcagcagaaaccccgcacccctcatctcatctcctctagctcctccgcggcaatggcgatcaaccaagaactcaagagagagagagagaggagagagaggtttagagagagaaaggagaggaGgagagggggagtgagaggcagctat
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| CDS seq | atgaggggtgcggggtttctgctgctcgttgtgttcgccgttgccgtcgccggtggggcggtggcggcggcggcggatttggacggcggcgatggtggtggtggtgtggcggcggagtggcggtttccgagctcgaggatgcgggacgcgtacgtggcgctgcagacgtggaggcgggaggccatcttctccgaccccggcaacctcaccgccgactgggtgggccccgacgtttgcaactacaccggcgtgttctgcgcgccgctgccgtgggatcgccgggaggtcgccgtcgccggcgtcgacctcaaccacggcgacatcgccgggtacctgccccccgagctcggcctgctcgccgacctcgcgctgctccacctcaactccaaccgcttctgcggcgtgctcccggccaccctccgccgcctccgcctcctacacgagctcgacctcagcaacaaccgcttcgtcgggaggttccccgaggtggtgctcgacatgcccgcgctccggttcctcgacctccgcttcaacgacttcgagggcggggtgccccgccagctgttcgaccggccgctcgacgccatcttcctcaaccacaaccgcttccgcttcgacctcccggacaacttcggcaactcgccggtctccgtcatcgtcctcgcgcacaacagcttcggcggctgcctcccggcgagcctcggcaacatgtccgggacgctcaacgagatcttgctcatcaacacgggcctcagctcctgcctgccgccggaggtcgggatgctgcgggaggtgacggtgttcgacgtgagcttcaaccggctcgccggcccgctgccgtcggcggtggccgggatgaggaaggtggagcagctcgacgtcgcgcacaacctgctcacgggggcgataccgcaggcggtgtgcgagctgccgcgcctcaagaacttcaccttcgcgtacaacttcttcaccggcgagccgccgtcctgcgcgcgcgccgtgccgcgctacggcgaccggaggaactgcctgcccaaccgccccgcccagcggacgctgcggcagtgcgccgcgttcttcgcgcgccctcccgtcaactgcgccgcgttccagtgcaagccgttcgtcccggccctgccgccaccatcgccgccaccaccatcaccgccgccgccttcgccaccgccgccatccccaccgccaccgtcgacatcaccgcctccgccttcaccaccaccgccatctccaccgccaccatcgcctccaccgcctgcaccaatcttccacccaccgcagccgccgccgccgccgccaccacccgcgccacaaccgcatccgccatgtccggagctgccgccaccaccaccgccaccgccaccctgcggcggcgcaacaccagcattgtcaccaccaccaccaccaccttactaccccgggccatggccacctgtccatggagtaccatatggctcaccaccacctccccctctgcaacaccacagctcatggccaccgatccacagcgtaccatatggatcaccacctcctcccccgctgcattga
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| Protein seq | MRGAGFLLLVVFAVAVAGGAVAAAADLDGGDGGGGVAAEWRFPSSRMRDAYVALQTWRREAIFSDPGNLTADWVGPDVCNYTGVFCAPLPWDRREVAVAGVDLNHGDIAGYLPPELGLLADLALLHLNSNRFCGVLPATLRRLRLLHELDLSNNRFVGRFPEVVLDMPALRFLDLRFNDFEGGVPRQLFDRPLDAIFLNHNRFRFDLPDNFGNSPVSVIVLAHNSFGGCLPASLGNMSGTLNEILLINTGLSSCLPPEVGMLREVTVFDVSFNRLAGPLPSAVAGMRKVEQLDVAHNLLTGAIPQAVCELPRLKNFTFAYNFFTGEPPSCARAVPRYGDRRNCLPNRPAQRTLRQCAAFFARPPVNCAAFQCKPFVPALPPPSPPPPSPPPPSPPPPSPPPPSTSPPPPSPPPPSPPPPSPPPPAPIFHPPQPPPPPPPPAPQPHPPCPELPPPPPPPPPCGGATPALSPPPPPPYYPGPWPPVHGVPYGSPPPPPLQHHSSWPPIHSVPYGSPPPPPLH |
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| Function | Leucine-rich repeat extensin-like protein 4 [UniProtKB/Swiss-Prot:Q9LHF1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0005460 | OsLima_01g0005460.01 | Chr01 | 4102934 | 4105208 | - | NAM | ||
| CDS seq | atgaggggtgcggggtttctgctgctcgttgtgttcgccgttgccgtcgccggtggggcggtggcggcggcggcggatttggacggcggcgatggtggtggtggtgtggcggcggagtggcggtttccgagctcgaggatgcgggacgcgtacgtggcgctgcagacgtggaggcgggaggccatcttctccgaccccggcaacctcaccgccgactgggtgggccccgacgtttgcaactacaccggcgtgttctgcgcgccgctgccgtgggatcgccgggaggtcgccgtcgccggcgtcgacctcaaccacggcgacatcgccgggtacctgccccccgagctcggcctgctcgccgacctcgcgctgctccacctcaactccaaccgcttctgcggcgtgctcccggccaccctccgccgcctccgcctcctacacgagctcgacctcagcaacaaccgcttcgtcgggaggttccccgaggtggtgctcgacatgcccgcgctccggttcctcgacctccgcttcaacgacttcgagggcggggtgccccgccagctgttcgaccggccgctcgacgccatcttcctcaaccacaaccgcttccgcttcgacctcccggacaacttcggcaactcgccggtctccgtcatcgtcctcgcgcacaacagcttcggcggctgcctcccggcgagcctcggcaacatgtccgggacgctcaacgagatcttgctcatcaacacgggcctcagctcctgcctgccgccggaggtcgggatgctgcgggaggtgacggtgttcgacgtgagcttcaaccggctcgccggcccgctgccgtcggcggtggccgggatgaggaaggtggagcagctcgacgtcgcgcacaacctgctcacgggggcgataccgcaggcggtgtgcgagctgccgcgcctcaagaacttcaccttcgcgtacaacttcttcaccggcgagccgccgtcctgcgcgcgcgccgtgccgcgctacggcgaccggaggaactgcctgcccaaccgccccgcccagcggacgctgcggcagtgcgccgcgttcttcgcgcgccctcccgtcaactgcgccgcgttccagtgcaagccgttcgtcccggccctgccgccaccatcgccgccaccaccatcaccgccgccgccttcgccaccgccgccatccccaccgccaccgtcgacatcaccgcctccgccttcaccaccaccgccatctccaccgccaccatcgcctccaccgcctgcaccaatcttccacccaccgcagccgccgccgccgccgccaccacccgcgccacaaccgcatccgccatgtccggagctgccgccaccaccaccgccaccgccaccctgcggcggcgcaacaccagcattgtcaccaccaccaccaccaccttactaccccgggccatggccacctgtccatggagtaccatatggctcaccaccacctccccctctgcaacaccacagctcatggccaccgatccacagcgtaccatatggatcaccacctcctcccccgctgcattga
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| Protein seq | MRGAGFLLLVVFAVAVAGGAVAAAADLDGGDGGGGVAAEWRFPSSRMRDAYVALQTWRREAIFSDPGNLTADWVGPDVCNYTGVFCAPLPWDRREVAVAGVDLNHGDIAGYLPPELGLLADLALLHLNSNRFCGVLPATLRRLRLLHELDLSNNRFVGRFPEVVLDMPALRFLDLRFNDFEGGVPRQLFDRPLDAIFLNHNRFRFDLPDNFGNSPVSVIVLAHNSFGGCLPASLGNMSGTLNEILLINTGLSSCLPPEVGMLREVTVFDVSFNRLAGPLPSAVAGMRKVEQLDVAHNLLTGAIPQAVCELPRLKNFTFAYNFFTGEPPSCARAVPRYGDRRNCLPNRPAQRTLRQCAAFFARPPVNCAAFQCKPFVPALPPPSPPPPSPPPPSPPPPSPPPPSTSPPPPSPPPPSPPPPSPPPPAPIFHPPQPPPPPPPPAPQPHPPCPELPPPPPPPPPCGGATPALSPPPPPPYYPGPWPPVHGVPYGSPPPPPLQHHSSWPPIHSVPYGSPPPPPLH
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.106467 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0180000 | RBH | 0.0 | 0.0 | 6.534926 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g08470 | RBH | 0.0 | 0.0 | 1.630479 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0180000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0005900 | RBH | 0.0 | 10.415118 | 1.906325 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0005570 | RBH | 0.0 | 2.635963 | 2.343091 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0005860 | RBH | 0.0 | 5.210459 | 5.129900 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0005490 | RBH | 0.0 | 0.077493 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0005690 | RBH | 0.476643 | 1.817758 | 6.332177 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0072900 | RBH | 1.6821575 | 12.412407 | 4.3242355 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0005640 | RBH | 0.0 | 0.130311 | 1.767973 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0073000 | RBH | 3.872457 | 4.9890235 | 14.6411095 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0005460 | RBH | 0.041890 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0005640 | RBH | 0.084759 | 6.238204 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0005700 | RBH | 0.0 | 5.716756 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0005640 | RBH | 0.0 | 0.0 | 0.057549 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0005620 | RBH | 0.0 | 6.051035 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G005660 | RBH | 0.0 | 1.238540 | 2.206357 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0005540 | RBH | 0.0 | 5.204768 | 4.689948 |
