Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_01g0004900 | OGI:01013830 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr01:3654378-3659626 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgaccgcgacgtcgcgtcgcggagccagcgcccgcgtcgtccgcgcgtctagaagagcgcgggggcgtcgtcgtcccgaggtcggtccaagtggcggtgggggcttgacttcctcggatcggttcgctggcttcgcgggcgtcgagaagggagaacatgggtggagtcaagcgcgtgcgtgggcggtgggcgggcgcgctgtgccgacgtcgccggcggcgtggactccaggtgttcgacgaaatgtgcagccccacgaaactggctgatgcatagcttatccggttgggatcaccaaggtgaggctcgccacctcactcgctgtcattttcgtaagtgcacttgcgcttccatttgagttattgatgaatcgcgacgcgccacctaagttgttttgagctcgttgggacatccatctgaacagtatgttgcagttgcactagcatcaaccgtcggtcacatgaacgtaactgtcaaattatgtccgagcctgcattaccagctgtcttggatatgcctactgaaagagccagagggtaagatataaagggtgtgtttagttggggaaaagaaaattttttggtgtcatatcgaacgtttgaccggatgtcggaaggggttttcggacacgaatgaaaaaactaatttcagaactcgcctggaaaccgcaagacgaatcttttgagactaattaagccgtcattagcacatgtgggttactgtagcacttatggctaatcacggactaattaggcttaaaagattcgtctcgcgatttcctccataactatgcaattagtttttctttttatctatatttaatgcttcatgcatgtgtccaaagattcgatgtgatgtttttgggAaaaaaaattggggaactaaacgggcccaaaggttgtgtttagttcagcgcaaagtttgattttggttgaaattggggatgatgtgactgaaaaattatgtgtatatgacaagttgatgtgatggaaaatgactgaagtttggatccaaacattggatctaaacacaaccaaacatattatactacctagtctacgtcccaaaaaaAACatattatactacctccagccataaatatttgacatttaagatcaaactttcaaagttctaaccattagttttatattaaactccctccatcctaaaatataagaacctagtaccggatgagacatttcctagtactatgaatctagacatgtgttcagattcgtagtactaggaaatgttccatccagtcataaggttcttatattttgaaacggatagagtaataagtttataatattataatactattttacgagacaaatctatgtacacccttgattttgtttttaaactaagcatttgtaaagtattgatgtttggaatttaaaagccggacaaagttgtgcggtaaagagaaacgaccagggatcttccgactagctccacaaggtgatgggctagacggcctaggtttgaagcctcacacctcctaattattggatattaggtcattccctaatattcgtgctaaatatctatgaccaaagggagtacaaagcattatgattgggaatatttgggaactgttgtgcaggtgtaaccgtgtatacacactagcagtgccataggtccttccctaatattcgcgctaaatgttaaatatctatgaccaaagggagtacaaaacattacgagcgttttttagtttgtgcgctaaatgctaaatatctatgaccaaagggagtacaaaacattatgattgggaatatttgggaactgctgtggaggtgtaaccatgtatacacaccagtagtgccatcggttgaataagatcaggttcaggtcagctagttttcctcatctatcttcaaatcgatgcacccgtcagtgctgtaagacaaacaacaacaacaagaagtagtgttttcttatctttatattgtacttatcacttaatgttgcgagtcttaggacgttaatacctttttccttatcgcttccgcaagaagcacgtgtaattcattgtggtctatgtgaagtgttttatatgtctgtagtggcagtccaaacatatcaaattttttgggctcagttcgtttgcgatggttcccaacctcccttctcgatttccgtgcgcacgcttttcaaactactatttcggtgcgttttttgcgaaatatttctatatgaaagttgtttaaaaaaatcatattgttccatttttgAaaaaaaatttagctaatacttaattattcacaccacttatgaacctttgtcgccaactgttagtcatgttcttcacgtgttaccggcttacagcacacatctcttttgtggttcccgtattcttctcaagcaaacactgaaaacactactccactatatgtcagtaggtcgcacatttacaacacattagttaatttcgtggatgaggtttagtaattattctctggatggatatatctaaaagctattttttctcaagttcaactatcacatagctaaaagttcagttgcctaactttctatagagtgcgttcttcaacaatgaacacttgttttttctttgaagaatctcgagatatattttaagcagtacatgttagaaatattaggtcaatagcatgactatctttctgaaattggggataattcaatggcaaaccatgagaataagatgttagccatttggtaccaatgctattgataactgcgaagatttgatgtaatcatgtagactaccatctccataaaacgaagcatgcttattttggagaactatgttcatgcgtccttctgcaacagtatggtggagcatgtggcttggctacgcgcaacatgatatctatcagtggaggattgagtggctgcagccatcttacatggaggaactaacattgaaagcaacacatgcgattcatacatgaagcctcccattttgacactgtaattcttgtgcaatttgatgatcagataaaatataaatttatatgcaaattgatatgctagctgtaatccacatatttcagtagtgcatgatccacttgctattccactaagattgcaaaaacactgagcaatcgggggatagcagaagttgagagcccctatataatgaacaataaggccacagggttgccacaattagagaagttcttgttaactccgattgagaccatggcaatatcagaaatgtcagctcttttctttctatttagtgctttgctaagaagttctttggtccacagtcaaggattgcagatagggttttacgataataattgccctgatgctgaggacatagtcaggtctaccgttgaaaagtattacaacaatgatgcaaccatagccccaggcttgctcaggctacaTttccatgactgttttgttcaagttagtttccttcatccatatggtgttaatctggatctcatgtttttatgcctgacatttgtttctacctgttttgtagggatgtgatgcgtcagttttgatttcaggtgcatcctctgagaggactgcaccacagaattttggtatcagggggtttgaagtgatagatgatgctaagtcccagttggaagccgtatgctccggggtggtatcctgtgctgatatattggctctcgctgcacgcgatgccgttgatttggtgagaaactcagctcctgtgcagaattcctgctgagaactgtcgattaccttttgattaattcagaccttaataactgaatttcttgttttgtacttactgcaagaccggtgggccaagctggtcagtccCActgggacggagagatggaagaatttcatcagcttcagatgccaaagccttgccgtctccggctgatcctgtatctgttcagaggcaaaaatttgcagctcaaggcctgacggaccgtgagctcgtaacactagttggtaaatcttcctccattcttgcttaatcatgcccgatacacacaattatatttatcaatcagtgaacaatttgtgtctcattttgtcatgagccaaactcagccctccatttgaaacagattattaatcggatgattgctgtggattatctacttgattatggtgataaacaaaatatttaagaaataaacttaacatgtaacttagaataaataaatggtctagagagtactccatccgtttcagattataagtcatttaactttggtcaaagtcaaactactttaagatttgactaagtttataagaaaAATaataacatactcaacacaagataaaaatattataaaaatatattcatctatagatttaataaaacaaatttgttattgtagatattaatatatttgtttgtaaatttggtcaaacttaatgtagtttaactttgactaaagttaaaacgacttataatctaaaacggagttaatacaatataataaacttattttaagcaaacatatttttagtggcatggagcctataattcgatgaagtaggtttatactccactgctaatgctaaccctgtgtgtggttcactgatctctgtaactgtaggtgctcacaccatcgggcagacggactgcatctttttccggtaccggctctacaacttcacggcgacggggaacgcggacccgacgatcagcccgtcggcgctgccgcagctgcgggcgctgtgcccgcccgccggcgacggctcccggcgcgtggcgctggacctgggcagcccgggggcgttcgacgtgagcttcttcaagaacgtcagggacggcggcgccgtgctggagtccgaccagcggctgtggggcgacgccgcgacgcaggccgccgtgcagagcttcgccggcaacgtcagggggctcttcggcctccggttcagctacgagttccccaaggccatggtcaggatgagcagcatcgccgtcaagaccggcagccagggcgagatcaggaggaagtgctccaagttcaactaggtgcagtagcccagtcgacagtgaattttgtgatcgatcgagtcacctgtcctgaatgatcttgatatatgtacacatgctgttcttctcccagtacttctgcatgccagggcttgaaggcttgcgtgcatgacgtgcatgtgttcgagaaccctgtaattgattagtgtgcactgatgcagtattttggctggggaagtatggttgagaatttgagatgcaggtttaactgcatttttttaagacaatgaaataacatcatgtgtttgcttc
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| CDS seq | atgaccgcgacgtcgcgtcgcggagccagcgcccgcgtcgtccgcgcgtctagaagagcgcgggggcgtcgtcgtcccgaggtcggtccaagtggcggtgggggcttgacttcctcggatcggttcgctggcttcgcgggcgtcgagaagggagaacatgggtggagtcaagcgcgtgcgtgggcggtgggcgggcgcgctgtgccgacgtcgccggcggcgtggactccaggattgcagatagggttttacgataataattgccctgatgctgaggacatagtcaggtctaccgttgaaaagtattacaacaatgatgcaaccatagccccaggcttgctcaggctacaTttccatgactgttttgttcaaaccggtgggccaagctggtcagtccCActgggacggagagatggaagaatttcatcagcttcagatgccaaagccttgccgtctccggctgatcctgtatctgttcagaggcaaaaatttgcagctcaaggcctgacggaccgtgagctcgtaacactagttggtgctcacaccatcgggcagacggactgcatctttttccggtaccggctctacaacttcacggcgacggggaacgcggacccgacgatcagcccgtcggcgctgccgcagctgcgggcgctgtgcccgcccgccggcgacggctcccggcgcgtggcgctggacctgggcagcccgggggcgttcgacgtgagcttcttcaagaacgtcagggacggcggcgccgtgctggagtccgaccagcggctgtggggcgacgccgcgacgcaggccgccgtgcagagcttcgccggcaacgtcagggggctcttcggcctccggttcagctacgagttccccaaggccatggtcaggatgagcagcatcgccgtcaagaccggcagccagggcgagatcaggaggaagtgctccaagttcaac
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| Protein seq | MTATSRRGASARVVRASRRARGRRRPEVGPSGGGGLTSSDRFAGFAGVEKGEHGWSQARAWAVGGRAVPTSPAAWTPGLQIGFYDNNCPDAEDIVRSTVEKYYNNDATIAPGLLRLHFHDCFVQTGGPSWSVPLGRRDGRISSASDAKALPSPADPVSVQRQKFAAQGLTDRELVTLVGAHTIGQTDCIFFRYRLYNFTATGNADPTISPSALPQLRALCPPAGDGSRRVALDLGSPGAFDVSFFKNVRDGGAVLESDQRLWGDAATQAAVQSFAGNVRGLFGLRFSYEFPKAMVRMSSIAVKTGSQGEIRRKCSKFN |
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| Function | Peroxidase 25 [UniProtKB/Swiss-Prot:O80822] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0004900 | OsLima_01g0004900.01 | Chr01 | 3654378 | 3659626 | + | NAM | ||
| CDS seq | atgaccgcgacgtcgcgtcgcggagccagcgcccgcgtcgtccgcgcgtctagaagagcgcgggggcgtcgtcgtcccgaggtcggtccaagtggcggtgggggcttgacttcctcggatcggttcgctggcttcgcgggcgtcgagaagggagaacatgggtggagtcaagcgcgtgcgtgggcggtgggcgggcgcgctgtgccgacgtcgccggcggcgtggactccaggattgcagatagggttttacgataataattgccctgatgctgaggacatagtcaggtctaccgttgaaaagtattacaacaatgatgcaaccatagccccaggcttgctcaggctacaTttccatgactgttttgttcaaaccggtgggccaagctggtcagtccCActgggacggagagatggaagaatttcatcagcttcagatgccaaagccttgccgtctccggctgatcctgtatctgttcagaggcaaaaatttgcagctcaaggcctgacggaccgtgagctcgtaacactagttggtgctcacaccatcgggcagacggactgcatctttttccggtaccggctctacaacttcacggcgacggggaacgcggacccgacgatcagcccgtcggcgctgccgcagctgcgggcgctgtgcccgcccgccggcgacggctcccggcgcgtggcgctggacctgggcagcccgggggcgttcgacgtgagcttcttcaagaacgtcagggacggcggcgccgtgctggagtccgaccagcggctgtggggcgacgccgcgacgcaggccgccgtgcagagcttcgccggcaacgtcagggggctcttcggcctccggttcagctacgagttccccaaggccatggtcaggatgagcagcatcgccgtcaagaccggcagccagggcgagatcaggaggaagtgctccaagttcaac
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| Protein seq | MTATSRRGASARVVRASRRARGRRRPEVGPSGGGGLTSSDRFAGFAGVEKGEHGWSQARAWAVGGRAVPTSPAAWTPGLQIGFYDNNCPDAEDIVRSTVEKYYNNDATIAPGLLRLHFHDCFVQTGGPSWSVPLGRRDGRISSASDAKALPSPADPVSVQRQKFAAQGLTDRELVTLVGAHTIGQTDCIFFRYRLYNFTATGNADPTISPSALPQLRALCPPAGDGSRRVALDLGSPGAFDVSFFKNVRDGGAVLESDQRLWGDAATQAAVQSFAGNVRGLFGLRFSYEFPKAMVRMSSIAVKTGSQGEIRRKCSKFN
More
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.084526 | 0.288680 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0172600 | RBH | 0.251799 | 0.425886 | 0.828737 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g07770 | RBH | 0.182869 | 0.127318 | 0.109326 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0172600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0005320 | RBH | 0.147382 | 2.029046 | 0.548447 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0005020 | RBH | 0.493718 | 0.000000 | 0.245228 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0005270 | RBH | 0.0 | 3.459209 | 1.478655 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0004920 | RBH | 0.000000 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0005140 | RBH | 1.300371 | 0.000000 | 2.104822 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0066300 | RBH | 6.5389685 | 69.317131 | 0.344628 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0005090 | RBH | 0.282252 | 0.479677 | 0.160011 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0066900 | RBH | 8.8131615 | 28.66074 | 0.2247865 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0005090 | RBH | 0.139952 | 7.094848 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0005150 | RBH | 10.101732 | 31.211575 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0002370 | RBH | 0.775293 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0005080 | RBH | 0.000000 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G005130 | RBH | 0.000000 | 0.000000 | 0.251477 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0005020 | RBH | 0.000000 | 54.756584 | 0.000000 |
