Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_01g0004130 | OGI:01011440 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr01:3171095-3174561 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcatctgctgctctcctcatcttcctcttggccgcacgcaaccatggttgctctcgcgttgtcggtggccgggctcgccggcttggcgtggtctgtactccgcatactcgtcggcttggtgtagttcaatggttagtaccaaatgtggaactcccttgctgctcgcaactactgtttgctatggtgaagaagtgaagaattgaagatcgaaacttttttcaccatacagctgcattaaggtagttttatttggtaagttcatttttgcaaacacctcttgtgttttgatgcttctaaattattaggattttttttcacatgagccaaacaatatgtttggtgggaaccatatatttgatgctaatacaagagaaagtactagtatgatttgacagcttgaatcgacatgggaattcagattaagatccaaccttacaagttgtaatgtgattggaaattggtaaaggtgctaattaatatgaaaaaaaggtggggattttaatttaaatgggcaaacatgctatagggatatgtatcaaatgtctgtgcagtctcttcatgctgcatcccttgactttgttcagaagttctgaaataaccagatgactgaagtaatgaagcaccttcaacatgatagtagtctggcatttgcatgtgattgtagttagtgggaatctctgaacgaccctgaatctgtataaggcaagtaataatcagtagcactaataagagagtctcttttgccatgtgtgtgtgtatcttgaatctactgacctgcatcatggtgtatggcagtgatggtgttaccacctctgcttgtactggacactttgatgtgtttgaatcactctttttctttttactccgttgtgttgccttgtcAaaaccactaattggtctcctcgacccacgaatggctttctccttaacctttatgcctcttgctttactcgggccaacattttcctctgtgcctatgataaaataTttttgagatagctgatttagattataacatagtagtcactagcataagtactattcaactcagagtaggatacaaaccagatttatccaaatctggatcaggccttatactcaagtatttctccacatcttctgctaacttttgtgcattgttggcagccattaagtatgtttcatcagattctgcagctcgagatgctattttaacaaacattctgcacaagtctctcctgcgcgttgataactttattttaggatcttcatgagtactgcagttgctcttTAtatgtagagattttgcatcaatggtccatctttgtagtatgtattgcttaggaatttcttttatattgttaacatcaagtatcttcaatgcatggcaacataggattccgagaaattcaaacttcttgcagctgcacctgactttaccttctgttggagaaaattttacaacatgctcatggtgcttaccgtgaacttttaatttgtacaccacttcagcatcaatatcaccacagtagtataggtcacagttcaatgtttgcaacacttgttcctgaaacactttaaatattgctggagtataaattcttgttgcttgccttaatattgtcaaatctgctttcggccatggtgtactttgtgttgtcttaaagtcatttttgacttcctcatatcttttgtctgacaacaacctgtcaaagtgttccaagaaggtaagtatgtcatatttcacactgatatagcccttcaattcattgttcatgctctcacttctctgtgttccactcatatcagcagaaaatgtgtttctCccatacactaatgcccattgctcttttttctaaaatagcctctcaagccatttgttctcctgtagatcatactttttaagcattctattccatgcatttataaattcatcttcctcctctttgtcataaatacaattctgaaaatctgcattgaatttcttgtactccttcacaactccagcaaggtgtttgcaggcattctggttcatatgtcaaacacaaattctatgatgactttctggcatgactaacttgattgctttggctattgctgcgtcttcatcagtcaatatagtctgtggcttctttccagacatggcttttaaaaatgtcttgaaaagccaaacaaaactatcagtggtttcatcatacaaaagtgcagcaccaaaaacaacacttttcttatgattatccacaccaacaagtaaaccaaatggacgaccatcatttagttttctatatgttgtgtcaaaacaaagaacatcaccaaaaacttcataatcagcaatcattttagaattagtccagaaaatatttgttatcaagtcatcctcatcaaccagaatggaatagaaaaaattaacatcttccgatgattttttctccatatattccaagactccccctgtgtcaccttcgtttaccttcaatgacctctttgaatataatctattcttcatgtcttcacgagtaaatccaagattctcatatccacccgcttcttttgccattaaatcaatagtagccttattagaaatgcctactgattttgcattttcaacacttgccatctgtgcttcagttattttcctttgagatcttaagtagagggcctgacttccagtagcaagaatgtggttatgctcgtgcaagaattcatatatgcaatacaatccatcatccctaagacttatcttcatgcatgctcggcacatacattgtgtttctggcctactaaaacactgaccgtaatttgaaatttggtcttctcttttatcatgaccacgagtacctattgttaaataaaactaactcagtatatgaattctatatgaacactaaactttgtaaatataagttggaactagtacctgcacgagaacaacaaaatgtccgattctttattatggtggaatctttcacataatggtaactgcttcttcgaatgctaaaacccatgtctcgagcataggcattatagaaatcatatgcctcttgttcactgttgaatttcataccgatgattggtgccttccctttggagggatctgcttgtggagtagcttcaattttactaggatcttgattaatatacctgttttttatctgagacaaattagaaaagaagaaaaactttcatgaaacttacagaaaaaaaagggctaatagaaaagaagcaaaacttctatgagatttactgaacggagatatgatgtgcttgtagtgatcaagtctcaatgattactaataaaagaaagtgaaaacattatgaagtcttaccgtctctaattccccttctaggttaccatgaaagcttgtccctggatgatgcagtacaaacgttctagcagaggcagctggttccgtcggcatggttgtcacttgttcatgcagtgaatcggtgaccttgattgaccttggaagattagatagagaggccat
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| CDS seq | atggcctctctatctaatcttccaaggtcaatcaaggtcaccgattcactgcatgaacaagtgacaaccatgccgacggaaccagctgcctctgctagaacatggaccattgatgcaaaatctctacataTAaagagcaactgcagtactcatgaagatcctaaaataaagttatcaacgcgcaggagagacttgtgcagaatgtttgttaaaatagcatctcgagctgcagaatctgatgaaacatacttaatggctgccaacaatgcacaaaagttagcagaagatgtggagaaatacttgagtataaggcctgatccagatttggataaatctggcacagaggaaaatgttggcccgagtaaagcaagaggcataaaggttaaggagaaagccattcgtgggtcgaggagaccaattagtggtttTgacaaggcaacacaacggagtaaaaagaaaaagagtgattcaaacacatcaaagtgtccagtacaagcagaggtggtaacaccatcactgccatacaccatgatgcagattcagggtcgttcagagattcccactaactacaatcacatgcaaatgccagactactatcatgttgaagaccacgccaagccggcgagcccggccaccgacaacgcgagagcaaccatggttgcgtgcggccaagaggaagatgaggagagcagcagatga
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| Protein seq | MASLSNLPRSIKVTDSLHEQVTTMPTEPAASARTWTIDAKSLHIKSNCSTHEDPKIKLSTRRRDLCRMFVKIASRAAESDETYLMAANNAQKLAEDVEKYLSIRPDPDLDKSGTEENVGPSKARGIKVKEKAIRGSRRPISGFDKATQRSKKKKSDSNTSKCPVQAEVVTPSLPYTMMQIQGRSEIPTNYNHMQMPDYYHVEDHAKPASPATDNARATMVACGQEEDEESSR |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0004130 | OsLima_01g0004130.01 | Chr01 | 3171095 | 3174561 | - | NAM | ||
| CDS seq | atggcctctctatctaatcttccaaggtcaatcaaggtcaccgattcactgcatgaacaagtgacaaccatgccgacggaaccagctgcctctgctagaacatggaccattgatgcaaaatctctacataTAaagagcaactgcagtactcatgaagatcctaaaataaagttatcaacgcgcaggagagacttgtgcagaatgtttgttaaaatagcatctcgagctgcagaatctgatgaaacatacttaatggctgccaacaatgcacaaaagttagcagaagatgtggagaaatacttgagtataaggcctgatccagatttggataaatctggcacagaggaaaatgttggcccgagtaaagcaagaggcataaaggttaaggagaaagccattcgtgggtcgaggagaccaattagtggtttTgacaaggcaacacaacggagtaaaaagaaaaagagtgattcaaacacatcaaagtgtccagtacaagcagaggtggtaacaccatcactgccatacaccatgatgcagattcagggtcgttcagagattcccactaactacaatcacatgcaaatgccagactactatcatgttgaagaccacgccaagccggcgagcccggccaccgacaacgcgagagcaaccatggttgcgtgcggccaagaggaagatgaggagagcagcagatga
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| Protein seq | MASLSNLPRSIKVTDSLHEQVTTMPTEPAASARTWTIDAKSLHIKSNCSTHEDPKIKLSTRRRDLCRMFVKIASRAAESDETYLMAANNAQKLAEDVEKYLSIRPDPDLDKSGTEENVGPSKARGIKVKEKAIRGSRRPISGFDKATQRSKKKKSDSNTSKCPVQAEVVTPSLPYTMMQIQGRSEIPTNYNHMQMPDYYHVEDHAKPASPATDNARATMVACGQEEDEESSR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g06852 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0024680 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0004240 | RBH | 0.000000 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0009530 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0004350 | RBH | 0.000000 | 0.000000 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0057400 | RBH | 0 | 0 | 0.0049685 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0004290 | RBH | 0.000000 | 0.000000 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0058700 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0007600 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0004280 | RBH | 0.000000 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0004370 | RBH | 0.000000 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0004330 | RBH | 0.000000 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0004270 | RBH | 0.000000 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G004340 | RBH | 0.000000 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0004230 | RBH | 0.000000 | 0.0 | 0.000000 |
