Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_01g0004020 | OGI:01011140 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr01:3116371-3118089 | ||||||||
| Gene Symbol | OsbHLH035, bHLH035, OsbHLH35, bHLH35, bHLH107 | ||||||||||
| DNA seq | accaattatcatgtacatgaagtgatcaaatctcacacacaagcatatctctcgcaccattccaccctatagaaacgagataacaagacgctgtttgcactagctattgtaagctccatctcactttcacttcgttttccttgctttgctgcatcatttcttgacaactgcagttgttcttgatgctgtttcttcatctgatccatctcattttcccctgttactgcagtgacagccgacaagaaccagttaggtaaaactcagtaggatgcaggtttgaatggctgaatgccaacctctgcaactgcaagaaggcaagaaactgcaagagctgcagccatacgatggctgcaatccttcagtgtacagaggcccaattctgctgccccggcaggccaactcggcgccgccggccgtgccgccggagatgtcgtcctcgtcggggtcagggagaagcgcgacggaggcgagagcgttgaagatccacagcgaggctgaacggcggcggcgagagaggatcaatgctcatctgacaacactgaggagaatgatccctgatactaagcaggtttgtgcaagtttttaccttcagttgtgaagcattcagaaagaaaaaaaatatgcatcaacatctgagccatttcagagagtttgctcgcagttcaactttaaactttttttgtgatcttgttagctaacataattgttgaagctaaagatgagagaggttagatatctatttaaaaaactgtttttctgtcgtagttcgtgtagaactttgatacttgcaagaaagtcgaaaccaagaaaaagtcatctgaaagaaatcttcaggctcacatttgttcacatttcaacactccttttctaataagtttggaattccctcacaggacaaatgctacaagcctagaatgccatgactcctgaacacaaattttcttaaaaaaatttctgcactgcagatggacaaggccaccttgttagccagagtggtggaccaagtgaaggatctgaagaggaaagcaagtgagatcacacaaagaacacctctccctccagagaccaacgaagtctccatcgaatgcttcaccggagacgctgccaccgccgccaccactgtcgccggcaaccacaagaccttgtacatcaaggcttccatcagctgcgacgaccggccggacctcatcgccgggatcacccacgcattccatggcctgaggctgaggacggtcagagcagagatgacatcactgggaggaagggtgcagcatgtgttcatattgtgcagggaGgaaggcattgcaggtggtgtgagcctcaagtctctgaaggaggctgtcaggcaggcactagccaaggttgcctctcctgaattggtatatggcagcagtcactttcagagcaagaggcagaggatcctggagtcacattgctcaattatgtccatatagatttgttcctcttctggggattttgattttaTttttctactagctgagaatatgtatgaaatgagagagagaatcttcttcttctgagagctatataggcctgagaattgtgtgcctgaaattgctgtgaaagaattgatgtctgaactgttgctagtgctagtggttgcaatcaactgacaagatcatatggcacagggtttgcattgtgtatgactgtgtgtacagaaatattcttctgggaagtcacatgataagcttgaca
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| CDS seq | atggctgaatgccaacctctgcaactgcaagaaggcaagaaactgcaagagctgcagccatacgatggctgcaatccttcagtgtacagaggcccaattctgctgccccggcaggccaactcggcgccgccggccgtgccgccggagatgtcgtcctcgtcggggtcagggagaagcgcgacggaggcgagagcgttgaagatccacagcgaggctgaacggcggcggcgagagaggatcaatgctcatctgacaacactgaggagaatgatccctgatactaagcagatggacaaggccaccttgttagccagagtggtggaccaagtgaaggatctgaagaggaaagcaagtgagatcacacaaagaacacctctccctccagagaccaacgaagtctccatcgaatgcttcaccggagacgctgccaccgccgccaccactgtcgccggcaaccacaagaccttgtacatcaaggcttccatcagctgcgacgaccggccggacctcatcgccgggatcacccacgcattccatggcctgaggctgaggacggtcagagcagagatgacatcactgggaggaagggtgcagcatgtgttcatattgtgcagggaGgaaggcattgcaggtggtgtgagcctcaagtctctgaaggaggctgtcaggcaggcactagccaaggttgcctctcctgaattggtatatggcagcagtcactttcagagcaagaggcagaggatcctggagtcacattgctcaattatgtccatatag
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| Protein seq | MAECQPLQLQEGKKLQELQPYDGCNPSVYRGPILLPRQANSAPPAVPPEMSSSSGSGRSATEARALKIHSEAERRRRERINAHLTTLRRMIPDTKQMDKATLLARVVDQVKDLKRKASEITQRTPLPPETNEVSIECFTGDAATAATTVAGNHKTLYIKASISCDDRPDLIAGITHAFHGLRLRTVRAEMTSLGGRVQHVFILCREEGIAGGVSLKSLKEAVRQALAKVASPELVYGSSHFQSKRQRILESHCSIMSI |
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| Function | Transcription factor bHLH51 [UniProtKB/Swiss-Prot:Q9XEF0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0004020 | OsLima_01g0004020.02 | Chr01 | 3116472 | 3118089 | + | NAM | ||
| CDS seq | atggctgaatgccaacctctgcaactgcaagaaggcaagaaactgcaagagctgcagccatacgatggctgcaatccttcagtgtacagaggcccaattctgctgccccggcaggccaactcggcgccgccggccgtgccgccggagatgtcgtcctcgtcggggtcagggagaagcgcgacggaggcgagagcgttgaagatccacagcgaggctgaacggcggcggcgagagaggatcaatgctcatctgacaacactgaggagaatgatccctgatactaagcagatggacaaggccaccttgttagccagagtggtggaccaagtgaaggatctgaagaggaaagcaagtgagatcacacaaagaacacctctccctccagagaccaacgaagtctccatcgaatgcttcaccggagacgctgccaccgccgccaccactgtcgccggcaaccacaagaccttgtacatcaaggcttccatcagctgcgacgaccggccggacctcatcgccgggatcacccacgcattccatggcctgaggctgaggacggtcagagcagagatgacatcactgggaggaagggtgcagcatgtgttcatattgtgcagggaGgaaggcattgcaggtggtgtgagcctcaagtctctgaaggaggctgtcaggcaggcactagccaaggttgcctctcctgaattggtatatggcagcagtcactttcagagcaagaggcagaggatcctggagtcacattgctcaattatgtccatatag
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| Protein seq | MAECQPLQLQEGKKLQELQPYDGCNPSVYRGPILLPRQANSAPPAVPPEMSSSSGSGRSATEARALKIHSEAERRRRERINAHLTTLRRMIPDTKQMDKATLLARVVDQVKDLKRKASEITQRTPLPPETNEVSIECFTGDAATAATTVAGNHKTLYIKASISCDDRPDLIAGITHAFHGLRLRTVRAEMTSLGGRVQHVFILCREEGIAGGVSLKSLKEAVRQALAKVASPELVYGSSHFQSKRQRILESHCSIMSI
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0004020 | OsLima_01g0004020.01 | Chr01 | 3116371 | 3118089 | + | NAM | ||
| CDS seq | atggctgaatgccaacctctgcaactgcaagaaggcaagaaactgcaagagctgcagccatacgatggctgcaatccttcagtgtacagaggcccaattctgctgccccggcaggccaactcggcgccgccggccgtgccgccggagatgtcgtcctcgtcggggtcagggagaagcgcgacggaggcgagagcgttgaagatccacagcgaggctgaacggcggcggcgagagaggatcaatgctcatctgacaacactgaggagaatgatccctgatactaagcagatggacaaggccaccttgttagccagagtggtggaccaagtgaaggatctgaagaggaaagcaagtgagatcacacaaagaacacctctccctccagagaccaacgaagtctccatcgaatgcttcaccggagacgctgccaccgccgccaccactgtcgccggcaaccacaagaccttgtacatcaaggcttccatcagctgcgacgaccggccggacctcatcgccgggatcacccacgcattccatggcctgaggctgaggacggtcagagcagagatgacatcactgggaggaagggtgcagcatgtgttcatattgtgcagggaGgaaggcattgcaggtggtgtgagcctcaagtctctgaaggaggctgtcaggcaggcactagccaaggttgcctctcctgaattggtatatggcagcagtcactttcagagcaagaggcagaggatcctggagtcacattgctcaattatgtccatatag
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| Protein seq | MAECQPLQLQEGKKLQELQPYDGCNPSVYRGPILLPRQANSAPPAVPPEMSSSSGSGRSATEARALKIHSEAERRRRERINAHLTTLRRMIPDTKQMDKATLLARVVDQVKDLKRKASEITQRTPLPPETNEVSIECFTGDAATAATTVAGNHKTLYIKASISCDDRPDLIAGITHAFHGLRLRTVRAEMTSLGGRVQHVFILCREEGIAGGVSLKSLKEAVRQALAKVASPELVYGSSHFQSKRQRILESHCSIMSI
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.265266 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0159800 | RBH | 0.0 | 1.534951 | 2.103279 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g06640 | RBH | 0.0 | 0.930681 | 0.621823 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0159800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0004420 | RBH | 0.545669 | 8.591649 | 3.566216 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0004160 | RBH | 0.078409 | 1.042945 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0004410 | RBH | 0.0 | 0.0 | 2.796532 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0003990 | RBH | 0.0 | 0.074793 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0004270 | RBH | 1.834455 | 4.475052 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0056200 | RBH | 1.517085 | 16.429345 | 46.078514 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0004190 | RBH | 0.0 | 0.247384 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0057300 | RBH | 3.985406 | 39.1560115 | 1.6828015 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0004560 | RBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0004160 | RBH | 0.0 | 14.408671 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0004250 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0004240 | RBH | 0.000000 | 0.000000 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0004170 | RBH | 0.0 | 1.726586 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G004230 | RBH | 0.0 | 0.999357 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0004110 | RBH | 0.666859 | 33.256573 | 0.550688 |
