Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_01g0003890 | OGI:01010450 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr01:3005664-3008444 | ||||||||
| Gene Symbol | SCP1, OsSCP1 | ||||||||||
| DNA seq | gaaattccgtatcaattctccccaactctccctctccttctctctcgcggagtcgtaccactgacttcccacacttctccgagctctccattcccgcgacccattgacccatcgggagcgcgccaatggcggaggccgccgtgctcctggccgccatcctactgtcgctgcaccctctccccatgtccctctccgccgccgccggcagcgacggcggcggaggtgacagtggcacggccgaggcggccgcggaccgaatcacggccctgccggggcagccacgggtcaacttctccatgtactccgggtacgtcaccgtcgacgcggccgccgggcgcgcgctcttctactggctcatcgaggccgccgacccggcgtccgcgccgctcgtgctctggctcaacggcgggcccgggtgctcctccgtcgggtacggcgcctccgaggagctcggcgcgttccggatcaaccccgacgggaggtcgctctacttgaacccctacccctggaacagaggtctcggtttctgttcttcccgcagacgtctcagtttgagtcgagaattgtgtgcttcgttttgatgattttttcgttgggttgcagtggccaacatgctgttcttggactcccccgccggcgtcggctactcctactccaacaccacctccgatctgttgactgctggtgataacaagacaggtgaactggaagcaattcaacttcttgtttagtgctgctaggagcatagtgtcaaatcctttcttgctctgatgctaattgctggtgtgcagctcatgattcatatgctttcttggtgaattggttggaacggtttccgcagtacaagtaccgtgatttctacatcgcaggcgagagctatggaggtgaatttcaatcataattggttaattatgagataggagctttgcactttagcaaattgcagatatgctactgtctttatgtttcagcatattcattcctgctgcaatgactgctttttcagggcactatgtccctcagttgtctcagctagtgtaccggaataacaaagacgttgaaaagcctatcctaaactttaaaggctttatggtgagaactttgtgtgttctcttttttttttttcctaaatgaactgtgtgatctctgaaaatataaattggtctagtcactttctacttatgaatgatcaaatggtattccaaatttactaggttggaaatgcggtaatcgatgattaccatgactacgttggcacatttgagtactggtggacacacgggctgatatctgatgatacatatcagaagctgcaggtggcctgtgattttgaatcatctgcgcacgcatcagaagcatgtaacaagatttatgaagtggctgaggctgaacaagggaacattgatgcatacagcatctacacgcctacctgtAaaaaaacttcaTttctcaaacgcaggttaataaggggtaacttggtaagtctgtccactctaaactagaagttaattgttctttggtagtagcatggtataatagttatttggatcaatgtgtgcagcactgcaactgcttatagtgttattcagataccctctgaatatatggtgaaacatggctcatgtattgcttcctaaccaaaaattttcgaatgtagccatggttgcctagaggatatgatccctgcactgaaaagtactctatgaagtactacaacctaccagaagtgcaaaaggcatttcatgccaatgtcactggaataccgtatgcttggaccacctgcaggtctgtcaattgattgcatcttccaataatcacaactagttcaacaaagttttttcttggtaatagtaatttgtgctgagattctgtaacaattttcagtgatgacttattttattattggaaagattcaccaaggtccatgcttcctatttaccgtgagctgattgcggctggtctaagaatatgggttttcaggtacatagatttcttgattttgtagaaagatggtttgaaactgcatccttattctttgatggttgcattattgctgatctaatagattcataaatcataatcataatacaatgctgattcagtaatatgaaactgtccatcaacgtggacttaatatttgtattggacaatttggcagcggcgacgctgattctgtagtccccctcactgcgacaagatactccattgatgcactctatctacctactgtcactaactggtatccttggtatgatgatgaggaggttagtcagcaacagttactaccaccctgccagttctgttccccatcccttttctatgcttattatttgttgatggtgtgaatcatgcttaggttgctggttggtgtcaagtgtatcaaggtttgacactggtgacgatccgaggagcggggcatgaagttcctctccatcgtccacggcaagccttaaaactctttgagcatttcctacaagataagcccatgcctcagcctttacatagcattcaatccttttagaattttcttccatttaaagtggaagatcatgccacgaggccatcatgttgtataatttgaagtctgtctcccacattttctgatgaacagatgaaatctgttcaaatgacagctggccactcatcattcttaatttattcaactatatgttcctagtgacttcagaaataatgcccatcctgttgaatatttccttttcggtttatgtataccacaagaccaagatggaaatatagtttttcattttatgagcttgcttc
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| CDS seq | atggcggaggccgccgtgctcctggccgccatcctactgtcgctgcaccctctccccatgtccctctccgccgccgccggcagcgacggcggcggaggtgacagtggcacggccgaggcggccgcggaccgaatcacggccctgccggggcagccacgggtcaacttctccatgtactccgggtacgtcaccgtcgacgcggccgccgggcgcgcgctcttctactggctcatcgaggccgccgacccggcgtccgcgccgctcgtgctctggctcaacggcgggcccgggtgctcctccgtcgggtacggcgcctccgaggagctcggcgcgttccggatcaaccccgacgggaggtcgctctacttgaacccctacccctggaacagagtggccaacatgctgttcttggactcccccgccggcgtcggctactcctactccaacaccacctccgatctgttgactgctggtgataacaagacagctcatgattcatatgctttcttggtgaattggttggaacggtttccgcagtacaagtaccgtgatttctacatcgcaggcgagagctatggagggcactatgtccctcagttgtctcagctagtgtaccggaataacaaagacgttgaaaagcctatcctaaactttaaaggctttatggttggaaatgcggtaatcgatgattaccatgactacgttggcacatttgagtactggtggacacacgggctgatatctgatgatacatatcagaagctgcaggtggcctgtgattttgaatcatctgcgcacgcatcagaagcatgtaacaagatttatgaagtggctgaggctgaacaagggaacattgatgcatacagcatctacacgcctacctgtAaaaaaacttcaTttctcaaacgcaggttaataaggggtaacttgccatggttgcctagaggatatgatccctgcactgaaaagtactctatgaagtactacaacctaccagaagtgcaaaaggcatttcatgccaatgtcactggaataccgtatgcttggaccacctgcagtgatgacttattttattattggaaagattcaccaaggtccatgcttcctatttaccgtgagctgattgcggctggtctaagaatatgggttttcagcggcgacgctgattctgtagtccccctcactgcgacaagatactccattgatgcactctatctacctactgtcactaactggtatccttggtatgatgatgaggaggttgctggttggtgtcaagtgtatcaaggtttgacactggtgacgatccgaggagcggggcatgaagttcctctccatcgtccacggcaagccttaaaactctttgagcatttcctacaagataagcccatgcctcagcctttacatagcattcaatccttttag
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| Protein seq | MAEAAVLLAAILLSLHPLPMSLSAAAGSDGGGGDSGTAEAAADRITALPGQPRVNFSMYSGYVTVDAAAGRALFYWLIEAADPASAPLVLWLNGGPGCSSVGYGASEELGAFRINPDGRSLYLNPYPWNRVANMLFLDSPAGVGYSYSNTTSDLLTAGDNKTAHDSYAFLVNWLERFPQYKYRDFYIAGESYGGHYVPQLSQLVYRNNKDVEKPILNFKGFMVGNAVIDDYHDYVGTFEYWWTHGLISDDTYQKLQVACDFESSAHASEACNKIYEVAEAEQGNIDAYSIYTPTCKKTSFLKRRLIRGNLPWLPRGYDPCTEKYSMKYYNLPEVQKAFHANVTGIPYAWTTCSDDLFYYWKDSPRSMLPIYRELIAAGLRIWVFSGDADSVVPLTATRYSIDALYLPTVTNWYPWYDDEEVAGWCQVYQGLTLVTIRGAGHEVPLHRPRQALKLFEHFLQDKPMPQPLHSIQSF |
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| Function | Serine carboxypeptidase 2 [UniProtKB/Swiss-Prot:P08819] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0003890 | OsLima_01g0003890.02 | Chr01 | 3005664 | 3008444 | + | NAM | ||
| CDS seq | atggcggaggccgccgtgctcctggccgccatcctactgtcgctgcaccctctccccatgtccctctccgccgccgccggcagcgacggcggcggaggtgacagtggcacggccgaggcggccgcggaccgaatcacggccctgccggggcagccacgggtcaacttctccatgtactccgggtacgtcaccgtcgacgcggccgccgggcgcgcgctcttctactggctcatcgaggccgccgacccggcgtccgcgccgctcgtgctctggctcaacggcgggcccgggtgctcctccgtcgggtacggcgcctccgaggagctcggcgcgttccggatcaaccccgacgggaggtcgctctacttgaacccctacccctggaacagagtggccaacatgctgttcttggactcccccgccggcgtcggctactcctactccaacaccacctccgatctgttgactgctggtgataacaagacagctcatgattcatatgctttcttggtgaattggttggaacggtttccgcagtacaagtaccgtgatttctacatcgcaggcgagagctatggagggcactatgtccctcagttgtctcagctagtgtaccggaataacaaagacgttgaaaagcctatcctaaactttaaaggctttatgaagctgcaggtggcctgtgattttgaatcatctgcgcacgcatcagaagcatgtaacaagatttatgaagtggctgaggctgaacaagggaacattgatgcatacagcatctacacgcctacctgtAaaaaaacttcaTttctcaaacgcaggttaataaggggtaacttgccatggttgcctagaggatatgatccctgcactgaaaagtactctatgaagtactacaacctaccagaagtgcaaaaggcatttcatgccaatgtcactggaataccgtatgcttggaccacctgcagtgatgacttattttattattggaaagattcaccaaggtccatgcttcctatttaccgtgagctgattgcggctggtctaagaatatgggttttcagcggcgacgctgattctgtagtccccctcactgcgacaagatactccattgatgcactctatctacctactgtcactaactggtatccttggtatgatgatgaggaggttgctggttggtgtcaagtgtatcaaggtttgacactggtgacgatccgaggagcggggcatgaagttcctctccatcgtccacggcaagccttaaaactctttgagcatttcctacaagataagcccatgcctcagcctttacatagcattcaatccttttag
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| Protein seq | MAEAAVLLAAILLSLHPLPMSLSAAAGSDGGGGDSGTAEAAADRITALPGQPRVNFSMYSGYVTVDAAAGRALFYWLIEAADPASAPLVLWLNGGPGCSSVGYGASEELGAFRINPDGRSLYLNPYPWNRVANMLFLDSPAGVGYSYSNTTSDLLTAGDNKTAHDSYAFLVNWLERFPQYKYRDFYIAGESYGGHYVPQLSQLVYRNNKDVEKPILNFKGFMKLQVACDFESSAHASEACNKIYEVAEAEQGNIDAYSIYTPTCKKTSFLKRRLIRGNLPWLPRGYDPCTEKYSMKYYNLPEVQKAFHANVTGIPYAWTTCSDDLFYYWKDSPRSMLPIYRELIAAGLRIWVFSGDADSVVPLTATRYSIDALYLPTVTNWYPWYDDEEVAGWCQVYQGLTLVTIRGAGHEVPLHRPRQALKLFEHFLQDKPMPQPLHSIQSF
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0003890 | OsLima_01g0003890.01 | Chr01 | 3005664 | 3008444 | + | NAM | ||
| CDS seq | atggcggaggccgccgtgctcctggccgccatcctactgtcgctgcaccctctccccatgtccctctccgccgccgccggcagcgacggcggcggaggtgacagtggcacggccgaggcggccgcggaccgaatcacggccctgccggggcagccacgggtcaacttctccatgtactccgggtacgtcaccgtcgacgcggccgccgggcgcgcgctcttctactggctcatcgaggccgccgacccggcgtccgcgccgctcgtgctctggctcaacggcgggcccgggtgctcctccgtcgggtacggcgcctccgaggagctcggcgcgttccggatcaaccccgacgggaggtcgctctacttgaacccctacccctggaacagagtggccaacatgctgttcttggactcccccgccggcgtcggctactcctactccaacaccacctccgatctgttgactgctggtgataacaagacagctcatgattcatatgctttcttggtgaattggttggaacggtttccgcagtacaagtaccgtgatttctacatcgcaggcgagagctatggagggcactatgtccctcagttgtctcagctagtgtaccggaataacaaagacgttgaaaagcctatcctaaactttaaaggctttatggttggaaatgcggtaatcgatgattaccatgactacgttggcacatttgagtactggtggacacacgggctgatatctgatgatacatatcagaagctgcaggtggcctgtgattttgaatcatctgcgcacgcatcagaagcatgtaacaagatttatgaagtggctgaggctgaacaagggaacattgatgcatacagcatctacacgcctacctgtAaaaaaacttcaTttctcaaacgcaggttaataaggggtaacttgccatggttgcctagaggatatgatccctgcactgaaaagtactctatgaagtactacaacctaccagaagtgcaaaaggcatttcatgccaatgtcactggaataccgtatgcttggaccacctgcagtgatgacttattttattattggaaagattcaccaaggtccatgcttcctatttaccgtgagctgattgcggctggtctaagaatatgggttttcagcggcgacgctgattctgtagtccccctcactgcgacaagatactccattgatgcactctatctacctactgtcactaactggtatccttggtatgatgatgaggaggttgctggttggtgtcaagtgtatcaaggtttgacactggtgacgatccgaggagcggggcatgaagttcctctccatcgtccacggcaagccttaaaactctttgagcatttcctacaagataagcccatgcctcagcctttacatagcattcaatccttttag
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| Protein seq | MAEAAVLLAAILLSLHPLPMSLSAAAGSDGGGGDSGTAEAAADRITALPGQPRVNFSMYSGYVTVDAAAGRALFYWLIEAADPASAPLVLWLNGGPGCSSVGYGASEELGAFRINPDGRSLYLNPYPWNRVANMLFLDSPAGVGYSYSNTTSDLLTAGDNKTAHDSYAFLVNWLERFPQYKYRDFYIAGESYGGHYVPQLSQLVYRNNKDVEKPILNFKGFMVGNAVIDDYHDYVGTFEYWWTHGLISDDTYQKLQVACDFESSAHASEACNKIYEVAEAEQGNIDAYSIYTPTCKKTSFLKRRLIRGNLPWLPRGYDPCTEKYSMKYYNLPEVQKAFHANVTGIPYAWTTCSDDLFYYWKDSPRSMLPIYRELIAAGLRIWVFSGDADSVVPLTATRYSIDALYLPTVTNWYPWYDDEEVAGWCQVYQGLTLVTIRGAGHEVPLHRPRQALKLFEHFLQDKPMPQPLHSIQSF
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr01 | 3006755 | 3006971 | + | OsLima_01g0003890.01 | OsLima_01g0003890.02,OsLima_01g0003890.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.091541 | 0.334993 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0158200 | RBH | 2.289230 | 2.424519 | 4.378656 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g06490 | RBH | 1.589105 | 1.955608 | 1.303049 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0158200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0004290 | RBH | 0.803500 | 18.021074 | 2.467473 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0004020 | RBH | 0.507416 | 4.277930 | 1.082839 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0004280 | RBH | 0.252636 | 15.792777 | 3.515059 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0003870 | RBH | 0.142560 | 0.867950 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0004130 | RBH | 7.784909 | 10.461246 | 6.526543 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0053600 | RBH | 1.1440215 | 3.9259265 | 1.369307 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0004050 | RBH | 0.000000 | 1.830855 | 0.988779 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0054800 | RBH | 2.112542 | 4.6470195 | 2.738751 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0004030 | RBH | 0.851428 | 6.604600 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0004110 | RBH | 1.372003 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0004100 | RBH | 0.301634 | 0.000000 | 0.306387 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0004030 | RBH | 0.130244 | 9.152603 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G004110 | RBH | 0.517153 | 4.877763 | 3.549530 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0003980 | RBH | 0.0 | 16.194103 | 5.914670 |
