Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_01g0003420 | OGI:01011440 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr01:2769765-2774866 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ctagagatccatcgaacctgcaacatgtcaattggaactaagagagatgatttgagaccaaaatggtcttaaactccaatgacctggttcttccaagaagtttctccttttagccacttctgctatcgtctcgttgtccattagatagatgacacctgtaaagcgcagacacaaagagatttccaaagataattgcaaagctaaaagttcagcttgtAaagctgattgagctttatcagtgattgcttggacaaaaatggcattatgattagaaggatcatgtatgaaaattcctatgccagcttgcccattattccaagaagcatcaatgtagcacctgattccagaaggaatgatgtccatccttttcttgtggttctcctgttgatcttgagcctgttgatcttgagcctgcaagtcaaattgagagataactttggaaaaagatgaagccattgcttctgccatgaagcagatttgagatggctctttgaagctaccctgaaatttaagatcatttctagctttccacaactgccacatggtgatgaaaaaattgctaaggttaattcttctaggcccattgttcacaataaaagcaattattaaggcaagattagagctgggaggaaagctatctatgttaaattgataacctgagatcatccaagtgagcctgctgaaaggacagatgaaaaaaggtGAAgatcactgtcaggcataccacatctgcaacaagctgccgatatatcattgattctacagttaagcctgtgagcagaaggaagagcctctctaaggagcctccaagcaaaaactttcactttgggaggaatatttttctttttccacactgttttaattaaggctaaagtttgggaatctacctgctgaaaggattgacagttttccttgtaaaattccttgtaagcacttttagtgttgcattctccattctttgtatgcctccagaaaagtttgtcatctgatccatctttcatgataggaacttgcataattttctgtacagcctcctcttcaaacaactagtttagtataccagcatcccattccttattttctctccacaaatctgcaactctaacaggtaattgacttggcatagggttaattttaatgtaattagaaatgtctgaattgagatcacaccaaggctgattccaaatggaaatattaccatctcctaattgccaaataacagaatgcttcaaagttttcctaatgttaaacactgagctccagtagacagatttggaaatatttctaggagcagtccaaaaagaggagttaggaaagtatttacctttgagaatttgagcaatctgatcttgaggatttgtaatcaatctccaagctgagttaaggataagacttttattgacagcttgaatgtcccttattccaagacccccttcttcaataggtctgcaaatgtttttccaagctttcaaacagagaggatttctgtcttgCccctcccttactcctgtccaccagaattttctaataatagaagtaatcttattaagaagattttttgagagaaggatagtggccatataatagacaggcagggatgcaaaaacagatttgatgagatttaaacgacctgcatgagaaagtttatttgctttcaaagtagtaagcttagctttgaacttttctattataaacttatagatctcatacttatttttattagtaacaaaaagagggtggcccaagtgcttcacagtagcatccatgacaggaacaggAaaaatgagcttaacagcattttgaatatgtaaaggagttgtcctgctgaacatgattcctgatttactccagttaggagtctgtcctgagttcctgcaaaattcatcaatgatacttttaatccgatttgcttcttcaactgtggccattcctgttataatgagatcgtctgcataaagaagagagtgaataacaggaccatctctgcttaacttgacaccattaatttgattattcgaaagagcctcatttagctgatctgaaagttcattcaaggcaagaacaaaaagatagggggaaagaggacaaccttgtctaatacccctattagcattaaaagaaccataagcctgaccattaatattgacagaaaaggaggaagaatttatgcaagacagaacaagattaatgaaatgagggtgaaaaccttttctttgaagagcaacagcaataaaatcccattcaagtttgtcaaaagctttagagagatcaattttgagcataaaagcattttgagcataagacttaagaccaaaagaatgcacaatttcttgagcaatgatgatattattggcaatccttctgccaggaataaaagcatgttgagattggcaaataagatcaggaagtttaccttttattctgttggcaacagatttagcaataattttgtaaagaacattgcaaagactgatgggcctgaaatccacaggggaggtgggcctattcttcttggggattagaacaatattggttttatttaactctgcaggaatgttacctgtatggtaaaatttctgaatcaattccattaaatcattttttatccatccccaagcagctttgtagaaagcagcattaagtccatgtggtccaggtgaagcattcctcatgtatttaatgatcttccaaatctcttcttcatctggtacctgccaatcaatttcttgggaagcattgacagcaggacaataagcaatgggattatcagttctgttagtgcaaaaaatatcagaaaaatagtttataaagatttgagcaatatcatcaggattggtaatgtaatcatcattgaaaacaatagaagcaattctgtttttccttctcctcttgatggcagcctgttgaaagaaggaagtgttcctgtcaccatctttaatccaatcttttttaactctctgtctgtgatgatctgagagtttctgaacccctttctttgtcgccacaatcactgcaatgcgcactacaacttgtctgtctgcaatgattctcacgggacggcatatgctgacacttgactgaccacttgcattcgatggaggctgtgtttagttcagcgtaaagtttggattttggttgaaattggagatgatgtgactgaaaagttgtgtgtataataggttgatgtgatggaaaaggactgaagtttggatccaaactttggatctaaatacaatcggaatagtagtacagtaatctcagcatccaaagaatttattattggatatgacacatgctattactccctccgccccagtatagtggacgtttttgactttgtaatttcaacgtttgaccattcgttttaTttgaaaaattagtgcaaatataaaaaaagataagtcatatgtaaagtacttttgataataaagcaattgacaaacaaaataaataataattctaaaattttttaaataagacgaatgatcaaaaattataaacaaaaactcaaaaagacaagtaatatgggacggaggtagtacgataaacctactactaaactagattggtttttctatcgtacgaagagagtaggtggaacacactgctccaagtactacaattacactggtcctgcccggtgacttaagaaaaacacaagtcaatgaggtcaagtgaactcttacaacaagggggccggggaactcagaaagcagcgatatatctccagcctgaaactaaggccctatttgctagagctcctaactccaactctcaactccaaactctaactccagtgagagctggcttctctgggagctgaggtaggtaaaaaagtgtttggctagattacttatctccacatttctacatcctttgtcgccatttcaacgaaaaccttgtaggcattctttgtcgccgccgccgtcggccaggctgcctcctgccgacgcccccgcacgcgagtcgcctgccgacgccgccgcccgcgagccaacgccgacgccaccgcgtgccgcccgtcgcggccacgcaaccgccgctgatgcgctgcggcccgcgctcgccgctcccgtatgctgccgacgcatacaccgccacaaccggttgtggccgtcgtcggaggatggggaagaagatgggccgccgctgccacagccccccGccaccgacgctgccgcagcccgccacagccagcctccggccgcgcgtgcgcgccgcgcgcaccgcccgtcgtcgtcccacagccgcccgtcgtcatccgtcgtcgtcccacagccgcccgtcgtcatttgtcgtcgcccgtcgccgcccgtcgtcgtcccgcagccgccgctgcccgcagctaccgcagcccgtcgccgtcgacgctgccgctgccgccgctgcccgccgacgccgccgccgcagcccgccgacgccgccgcactagctcgggattgggaggaagattggggtgaggagagagaacgggaggaaaggaggtagttgagtggcattttcgtgtaaatacactaaaatattagagggtagtgggtcttttggggtggagtggagctgtggagcagcaaaaacctagctccacccccatagttcattttctaggagtacctatgccaactccactcaaaaaaaagatgaatctggaccatttggcacagctcccgctccagataagttggagttgggagctagagctgtgctaaacggggcctaaactttgctccaaagacgctctcacaaaccgaaccaaataatccacatggcgataccgtctcatgaggcttggacgggctcctccccgtcccgacgatcgcagtgatcgctgcgtcaagcagcgatgaggcctcgctgcttgctttcaaggcggggctcaccgggagtaattcaagcgcactcgcctcatggaacagcagcagcgccagcttctgcaactgggagggcgtcacctgcagtcgccggaggccgacgcgggtggcgtcgctgaacctgccatccagcaatctcgccggcacgctctccccagccatcgggaacctcaccttcctgcgaaggctgaacctgagctccaacggcctctgcggcgagatccccaccagcat
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| CDS seq | atgctggtggggatctcgccgcagaggccgttggagctcaggttcagccttcgcaggaaggtgaggttcccgatggctggggagagcgtgccggcgagattgctggatggcaggttcagcgacgccacccgcgtcggcctccggcgactgcaggtgacgccctcccagttgcagaagctggcgctgctgctgttccatgaggcgagtgcgcttgaattactcccgttgtttgaagaggaggctgtacagaaaattatgcaagttcctatcatgaaagatggatcagatgacaaacttttctggaggcatacaaagaatggagaatgcaacactaaaagtgcttacaaggaattttacaaggaaaactgtcaatcctttcagcaggctcaagatcaacaggctcaagatcaacaggagaaccacaagaaaaggatggacatcattccttctggaatcaggtgctacattgatgcttcttggaataatgggcaagctggcataggaattttcatacatgatccttctaatcataatgccatttttgtccaagcaatcactgataaagctcaatcagcttTacaagctgaacttttagctttgcaattatctttggaaatctctttgtgtctgcgctttacaggtgtcatctatctaatggacaacgagacgatagcagaagtggctaaaaggagaaacttcttggaagaaccaggttcgatggatctctag
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| Protein seq | MLVGISPQRPLELRFSLRRKVRFPMAGESVPARLLDGRFSDATRVGLRRLQVTPSQLQKLALLLFHEASALELLPLFEEEAVQKIMQVPIMKDGSDDKLFWRHTKNGECNTKSAYKEFYKENCQSFQQAQDQQAQDQQENHKKRMDIIPSGIRCYIDASWNNGQAGIGIFIHDPSNHNAIFVQAITDKAQSALQAELLALQLSLEISLCLRFTGVIYLMDNETIAEVAKRRNFLEEPGSMDL |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0003420 | OsLima_01g0003420.01 | Chr01 | 2769765 | 2774866 | - | NAM | ||
| CDS seq | atgctggtggggatctcgccgcagaggccgttggagctcaggttcagccttcgcaggaaggtgaggttcccgatggctggggagagcgtgccggcgagattgctggatggcaggttcagcgacgccacccgcgtcggcctccggcgactgcaggtgacgccctcccagttgcagaagctggcgctgctgctgttccatgaggcgagtgcgcttgaattactcccgttgtttgaagaggaggctgtacagaaaattatgcaagttcctatcatgaaagatggatcagatgacaaacttttctggaggcatacaaagaatggagaatgcaacactaaaagtgcttacaaggaattttacaaggaaaactgtcaatcctttcagcaggctcaagatcaacaggctcaagatcaacaggagaaccacaagaaaaggatggacatcattccttctggaatcaggtgctacattgatgcttcttggaataatgggcaagctggcataggaattttcatacatgatccttctaatcataatgccatttttgtccaagcaatcactgataaagctcaatcagcttTacaagctgaacttttagctttgcaattatctttggaaatctctttgtgtctgcgctttacaggtgtcatctatctaatggacaacgagacgatagcagaagtggctaaaaggagaaacttcttggaagaaccaggttcgatggatctctag
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| Protein seq | MLVGISPQRPLELRFSLRRKVRFPMAGESVPARLLDGRFSDATRVGLRRLQVTPSQLQKLALLLFHEASALELLPLFEEEAVQKIMQVPIMKDGSDDKLFWRHTKNGECNTKSAYKEFYKENCQSFQQAQDQQAQDQQENHKKRMDIIPSGIRCYIDASWNNGQAGIGIFIHDPSNHNAIFVQAITDKAQSALQAELLALQLSLEISLCLRFTGVIYLMDNETIAEVAKRRNFLEEPGSMDL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0149750 | RBH | 0.000000 | 0.000000 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0149750 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0003810 | RBH | 0.000000 | 0.0 | 1.293145 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0003640 | RBH | 0.000000 | 0.000000 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0003810 | RBH | 0.0 | 0.000000 | 0.957053 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0003460 | RBH | 0.000000 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0003540 | RBH | 0.0 | 5.609337 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0003680 | RBH | 0.000000 | 16.181471 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0005230 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0003590 | RBH | 0.0 | 1.689026 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G003740 | SBH | 0.519781 | 4.854779 | 3.090059 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0003390 | RBH | 0.000000 | 0.000000 | 0.000000 |
