Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_01g0003170 | OGI:01008950 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr01:2618231-2619202 | ||||||||
| Gene Symbol | PIT, Pit, Pit(K59), Pit(Npb), Pi-t, PitNpb, PitK59, H2B | ||||||||||
| DNA seq | acgccgcaatctcgcgaatcccaccgcttccctttcctctcctctcctctccccgggaagaagacagcagcggcatccatggcgcccaaggcagagaagaagccggccgcgaagaagcccgcggaggaggagcccgcggcggagaaggccgagaaggcccccgcggggaagaagcccaaggcggagaagcgtctccccgccggcaaggccgagaagggcagcggcgaggggaggaaggcggggcggaagaaggcgaagaagagcgtcgagacctacaagatctacatcttcaaggtgctcaagcaggtccaccccgatatcggcatctcctccaaggccatgtccatcatgaacTccttcatcaacgacatcttcgagaagctcgccggggagtccgccaagctcgcccgctacaacaagaagcccaccatcacctcccgcgagatccagacctccgtccgcctcgtcctccccggcgagctcgccaagcacgccgtctccgagggcaccaaggccgtcaccaaattcacctccgcttaggcttcacccctgcatctatctatgtgttagttttagtgctatcgatgattggaaaatggatgttagatcgttagcttggtagtcagatgtcagtgatctggaacagtagctctgattttaaaccatgtgaatgtgatttctgggtatgtgatgtttgaccgccctgtgcctgctggtcaacgagtgataactagatctaatttttgtggaactatttacatggttgctacttgcattctgttcaactgttgtaaattcctctgtcactcgttggagttttattctctggagcatgtgtggaattgcctgggcatgcttttgggaaactatagcctgtagtcttatgttatgtttggttaattggttgccctgagcttgttggaattaatctatgtataattttgtgcaattacatcctgtgagtatgttgct
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| CDS seq | atggcgcccaaggcagagaagaagccggccgcgaagaagcccgcggaggaggagcccgcggcggagaaggccgagaaggcccccgcggggaagaagcccaaggcggagaagcgtctccccgccggcaaggccgagaagggcagcggcgaggggaggaaggcggggcggaagaaggcgaagaagagcgtcgagacctacaagatctacatcttcaaggtgctcaagcaggtccaccccgatatcggcatctcctccaaggccatgtccatcatgaacTccttcatcaacgacatcttcgagaagctcgccggggagtccgccaagctcgcccgctacaacaagaagcccaccatcacctcccgcgagatccagacctccgtccgcctcgtcctccccggcgagctcgccaagcacgccgtctccgagggcaccaaggccgtcaccaaattcacctccgcttag
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| Protein seq | MAPKAEKKPAAKKPAEEEPAAEKAEKAPAGKKPKAEKRLPAGKAEKGSGEGRKAGRKKAKKSVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSA |
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| Function | Histone H2B.3 [UniProtKB/Swiss-Prot:Q94JJ7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0003170 | OsLima_01g0003170.01 | Chr01 | 2618231 | 2619202 | + | NAM | ||
| CDS seq | atggcgcccaaggcagagaagaagccggccgcgaagaagcccgcggaggaggagcccgcggcggagaaggccgagaaggcccccgcggggaagaagcccaaggcggagaagcgtctccccgccggcaaggccgagaagggcagcggcgaggggaggaaggcggggcggaagaaggcgaagaagagcgtcgagacctacaagatctacatcttcaaggtgctcaagcaggtccaccccgatatcggcatctcctccaaggccatgtccatcatgaacTccttcatcaacgacatcttcgagaagctcgccggggagtccgccaagctcgcccgctacaacaagaagcccaccatcacctcccgcgagatccagacctccgtccgcctcgtcctccccggcgagctcgccaagcacgccgtctccgagggcaccaaggccgtcaccaaattcacctccgcttag
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| Protein seq | MAPKAEKKPAAKKPAEEEPAAEKAEKAPAGKKPKAEKRLPAGKAEKGSGEGRKAGRKKAKKSVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSA |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.170179 | 0.479754 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0149600 | SBH | 5.248086 | 4.997123 | 7.347138 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g05610 | RBH | 3.535574 | 3.111513 | 2.522788 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0149600 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0003560 | SBH | 0.103360 | 0.104010 | 0.895768 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0003390 | RBH | 0.264332 | 14.793319 | 4.243101 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0003540 | RBH | 0.0 | 0.606495 | 0.180115 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0003220 | RBH | 0.218160 | 1.529602 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0003450 | SBH | 3.476999 | 52.062603 | 12.395087 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0046100 | SBH | 33.700866 | 36.0434835 | 42.5310575 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0003340 | RBH | 0.544373 | 3.876086 | 2.591674 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0047500 | SBH | 28.858678 | 35.858185 | 133.8284685 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0003190 | RBH | 0.179317 | 0.734154 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0003290 | RBH | 1.511812 | 63.128193 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0003420 | RBH | 0.0 | 32.480698 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0003670 | SBH | 0.125562 | 1.788290 | 2.192862 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0003340 | SBH | 0.789545 | 25.894642 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G003510 | SBH | 1.024456 | 22.424274 | 5.529898 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0003350 | RBH | 2.745276 | 33.987495 | 5.741957 |
