Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_01g0002910 | OGI:01007830 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr01:2360678-2364485 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | cttccccacaggatcgagtcgggcagccacgaatcgatcgagagatctaatggcggcggcaaagctactgctgggtgatgctctccgcgaaccggaggcctcagctttgggcgcgctcggcgtcgccgccatctccacggccaccactttggccaccgcggcgttcgagccgccgccgggcggcttcggcaccaccacctacaaccatctcgccgtcgccgggctcgcagggaccttccttggcggggtggccctggtcggcacttcagtgtgggtctctgacaacccagctgcccgccgtggcaccggcaagaagctcctctacgccgccgtcccgccgctcctcgccgccgtcgttctatcggtggctgcgctgctctggtaagcatgtacaagcccctgtccgaccgcattactatccgccatgatcggagccaagccggccgtccctagcgtgctccttgtgtcaatcaaatgcaatctttattattccatttgtattgttcatttgtttgttttgttggtcgatcgctccgtcatgtgttgtgtctcgtggagttgtagtatcatcatgtaatagtgcttgcttcttcttcttctagtccattgtgtgtatcacatatgtatgatcacgtctcctgttcttggtctgtcaaagtgttattcgattgatggccggcttaatcgacgagtgttttgttaattatgagttcatatctcccaatttgaagtatggtgattcaaaggggagctatgcagtactagtttttggcttaattacatttagggaagagtggatttggagtactccatgcatatcggcgccgctcgccgtcgccgccgacgctgaatagttctggaagtttgccttgtcggccgtcgtgtccttctggtGctaaaagcccatctttttctcctttttttttctttTCttttttttttggaggcaactgttagaagagagggaatggtgggccatattaagtggggcccacatgccgtatcatatccatcacctttgtccttgcgttgccggcggcggcggcggctacggccatggagatctcacgcgaccatttgccggtgaggtcggctgctccgcctccgcctccgcatctacgcctgattgatcctcacccctctctccactgactgtgctatcgcgtttccggcggtggttgatcgaggcggtagcccgtgcggcgcgcgagattccgcccgtccacggatttccggtcgccatcgccggggttcgtcttctccggccagcccctcgccgcgcgaacctgcgccgcccgtcctcggccaggatctggtcggggatcgcttgtggtaggtgttagggggcacttgggtttggaggacagcatcgttgatgtgctttgactttgagttccttgctaatttagttatgctgactgttcccataatccctaaaatCccagcagttgcgttgcgtggtaggttatgtaaagcgcattcctgtgatgaaaaatagaccctgggagacatattatcaattgtatcaagcgatccaacacactaggtccccaaatattgtcgtagataccattttctcttcagtatgctgcttaaaacgcaaagtgtaaggttttctctgtgctgtccagttacatctaattccttatgtttaaagactgatattagtctttggttgggtgtgatgtgcttcttgttaatcgcaatacttgatctttactatcggtgcatatttagtcccaatatgcccttttagttaagttgctgaaacattgagcatcttgtcatgttgatcttcttgtgagtggttcaagatgatttgttctgttttaatggaagtaaaaaacgagggctgCcccctcctaatgggaagagaaaaaaagatgtatttcagcaaccatgtgttatagcacaatccaattagttcgctaagctattatggcctttatatcctgctctgagtatttatttgatttgctgtaaagttattaaatttatggcattgtatacgtgatttgtacttgattatatgctgctattggtgattcatgtaattagagctgaatgggatttttgctagatACacattgcttctttcaacaacccttatgcgAACaaaattaatgggctggtttctcttctgtgctgatttcctttgttccatagctgaagcttaagtaattgcaaaatttgtaggaacacatctgttcTtttgctcttacaataaatgtgaggtttgtattcgagctacactcatgctatgtgcatgcgctctgtctatctgaaccaatagacttttgtaaatacatttgcacaagacattgaggtcaactaaaattcttctatgcccaatggtgcagccatatttcatacatgaatatggctatcgctttgcctgataggttatggactgtgaactctgtgtttattttgatgtgaaaatggcctcagggcaacgcaggataactcatacatgtcaatccatacactaggtcctgagatattttcttaatgcccttttctcttttcactatactctacttgttaaacttctaagaaaaggtttatccctctacttgttacatctataattcctttgttttgatgtcaaaagcagtgtattcagctgtatattttgttgtgatatgctctggttgatagtagttagtgttcgtattttgacttgttgctgaacccttgagagaatctcgtaatgtttaactcttatgaattgttcgacatgaccTtttttgtcttgatgaatagtggcatggcaacccaaggcaagagcactagggccaagaggtattcctagaaacttaggggaaaacggagaaagacgtagcaggaccagagctgagggcatttggcacctttgaaacaccataatgcatctcgtaaaaaatattcaacttttaaaatttgtgctatgtaataggtggttaagtgctgttcttctgagtgatggaattgcatattgtaaataaatctccacttgtacaaaagatgagcaaatcttttgcttattcttgtctacttttttttggtcaaaatgaataggaatagcaggtgcctttaaagtgcaagtataatggaaagcgttggtaaattttaatatacttctgaaagaatcatcatccttgtgtcattatctttttcatgtagtgaactacagatttgctcatgtatttttaccatctctaacagctctttattaacggatagtgtatggttcttcttttatgtagggggatgttgagttgtaagaagaccagatgcatctgctttgattttagaggcatgcataacctgtcaaagagcagcaaaagaaatgcctcatagctgtgtgatacataactttgccaggagagatctctctatttaagcacacagactgatatggcattgttaaccatttgctcagttgctcttaaatgcatttctgctggcataagatggtagtatggtggaggttctgttgttaaaccctggtatcaggacttgatcaagcagtttggtacgttcggtgaaaattcatgcacatttgagcgatcgtgcggtactccgaagttggtgttttctatcctccggtaattgcggatcactggtataatgaggaaatcaacctaacgtataagtgccatggtctgtatttatgtgtatgtggagactggtgtgtgcactaattttctggaatgtcatttagtcagaagagttgtttagaagaggcataggcaaattctcttgtaaggcttttgtagttccttgagagtttaacatagttatgacagtagtgttttctatgacg
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| CDS seq | atggcggcggcaaagctactgctgggtgatgctctccgcgaaccggaggcctcagctttgggcgcgctcggcgtcgccgccatctccacggccaccactttggccaccgcggcgttcgagccgccgccgggcggcttcggcaccaccacctacaaccatctcgccgtcgccgggctcgcagggaccttccttggcggggtggccctggtcggcacttcagtgtgggtctctgacaacccagctgcccgccgtggcaccggcaagaagctcctctacgccgccgtcccgccgctcctcgccgccgtcgttctatcggtggctgcgctgctctgcccctcgccgcgcgaacctgcgccgcccgtcctcggccaggatctggtcggggatcgcttgtgggggatgttgagttgtaagaagaccagatgcatctgctttgattttagaggcatgcataacctgtcaaagagcagcaaaagaaatgcctcatag
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| Protein seq | MAAAKLLLGDALREPEASALGALGVAAISTATTLATAAFEPPPGGFGTTTYNHLAVAGLAGTFLGGVALVGTSVWVSDNPAARRGTGKKLLYAAVPPLLAAVVLSVAALLCPSPREPAPPVLGQDLVGDRLWGMLSCKKTRCICFDFRGMHNLSKSSKRNAS |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0002910 | OsLima_01g0002910.01 | Chr01 | 2360678 | 2364485 | + | NAM | ||
| CDS seq | atggcggcggcaaagctactgctgggtgatgctctccgcgaaccggaggcctcagctttgggcgcgctcggcgtcgccgccatctccacggccaccactttggccaccgcggcgttcgagccgccgccgggcggcttcggcaccaccacctacaaccatctcgccgtcgccgggctcgcagggaccttccttggcggggtggccctggtcggcacttcagtgtgggtctctgacaacccagctgcccgccgtggcaccggcaagaagctcctctacgccgccgtcccgccgctcctcgccgccgtcgttctatcggtggctgcgctgctctgcccctcgccgcgcgaacctgcgccgcccgtcctcggccaggatctggtcggggatcgcttgtgggggatgttgagttgtaagaagaccagatgcatctgctttgattttagaggcatgcataacctgtcaaagagcagcaaaagaaatgcctcatag
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| Protein seq | MAAAKLLLGDALREPEASALGALGVAAISTATTLATAAFEPPPGGFGTTTYNHLAVAGLAGTFLGGVALVGTSVWVSDNPAARRGTGKKLLYAAVPPLLAAVVLSVAALLCPSPREPAPPVLGQDLVGDRLWGMLSCKKTRCICFDFRGMHNLSKSSKRNAS |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0002910 | OsLima_01g0002910.02 | Chr01 | 2360678 | 2364485 | + | NAM | ||
| CDS seq | atggcggcggcaaagctactgctgggtgatgctctccgcgaaccggaggcctcagctttgggcgcgctcggcgtcgccgccatctccacggccaccactttggccaccgcggcgttcgagccgccgccgggcggcttcggcaccaccacctacaaccatctcgccgtcgccgggctcgcagggaccttccttggcggggtggccctggtcggcacttcagtgtgggtctctgacaacccagctgcccgccgtggcaccggcaagaagctcctctacgccgccgtcccgccgctcctcgccgccgtcgttctatcggtggctgcgctgctctgggggatgttgagttgtaagaagaccagatgcatctgctttgattttagaggcatgcataacctgtcaaagagcagcaaaagaaatgcctcatag
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| Protein seq | MAAAKLLLGDALREPEASALGALGVAAISTATTLATAAFEPPPGGFGTTTYNHLAVAGLAGTFLGGVALVGTSVWVSDNPAARRGTGKKLLYAAVPPLLAAVVLSVAALLWGMLSCKKTRCICFDFRGMHNLSKSSKRNAS |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| SE | Chr01 | 2361058 | 2363926 | + | OsLima_01g0002910.01 | OsLima_01g0002910.01,OsLima_01g0002910.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.121025 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0145200 | RBH | 0.140752 | 0.731927 | 1.861211 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g05180 | RBH | 0.095014 | 0.491405 | 0.478258 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0145200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0003280 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0003050 | RBH | 0.0 | 0.000000 | 0.293724 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0003260 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0003030 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0003100 | RBH | 0.000000 | 2.756760 | 2.181010 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0041000 | SBH | 0.121944 | 0.07095 | 0.1043355 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0003030 | RBH | 0.0 | 0.409030 | 0.197251 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0042700 | SBH | 0.9461365 | 0.0181075 | 1.1876185 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0003080 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0003130 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0005620 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0003040 | RBH | 0.0 | 1.236674 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G003220 | RBH | 0.135378 | 0.000000 | 0.594377 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0003070 | RBH | 0.0 | 3.182808 | 0.000000 |
