Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_01g0001590 | OGI:01004660 | 15/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr01:1212006-1212922 | ||||||||
| Gene Symbol | RBBI2-2, RBBI2-2, RBBI2-1, RBBI2-1 | ||||||||||
| DNA seq | tataattataatacccctccctgtggatatcgatagacgaatagatctctcattcgtcttttatttatcatgataacttcgtaacacatgacataacacgcataccaacatcaaaccacacgatagacacaacacacagacaaattgtacacacgtacgtatgtacgaatacgaacaagctagaacacacgcagactgatcgttcgatcgatcgcgaacgacgcgaacatatatttattggtgaaaggatcaatataatcagctagcttgatatagctagctatagttaatcagttcatgcgcacatgggcccgggctcgccggtgaagtggtcgcggcagatatagcgaggcggctccgacgacgaattcaccatgtcgcactccttgcaggcggcggcgcacgacgccacctcgtcggcgcagtggcagatcggtgggagagacctggtgcagaaggccttgtcgcagcaatcgccccacggccgcggcgtgcagacggggccagggttggtggtcgggtaccagtcgtcgcagacgaagacgacatcttcgccgccggccccgggcaccagctgcaggcagttctcgcaggcggcggcgcactgcttcacctcgtcgttgcaacgccaccgcggcgggtagatcttgagcacggacatctcgatgttgtcgcagcactcccacggtctggatttcgcctgtttgtttccatctgtttcgccggcggcgccgttgctggggaggcgaatgttgctgtcggtggtggtggtggtggcggtgacgatgccggcgaggacgaggaggaagagcagcatggaagcagccatcatggtgctcttcactttcatggtcatcttaattactttgcttggagccttggagcttattagctagctaggtttaggcgtggtttgg
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| CDS seq | atgaccatgaaagtgaagagcaccatgatggctgcttccatgctgctcttcctcctcgtcctcgccggcatcgtcaccgccaccaccaccaccaccgacagcaacattcgcctccccagcaacggcgccgccggcgaaacagatggaaacaaacaggcgaaatccagaccgtgggagtgctgcgacaacatcgagatgtccgtgctcaagatctacccgccgcggtggcgttgcaacgacgaggtgaagcagtgcgccgccgcctgcgagaactgcctgcagctggtgcccggggccggcggcgaagatgtcgtcttcgtctgcgacgactggtacccgaccaccaaccctggccccgtctgcacgccgcggccgtggggcgattgctgcgacaaggccttctgcaccaggtctctcccaccgatctgccactgcgccgacgaggtggcgtcgtgcgccgccgcctgcaaggagtgcgacatggtgaattcgtcgtcggagccgcctcgctatatctgccgcgaccacttcaccggcgagcccgggcccatgtgcgcatga
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| Protein seq | MTMKVKSTMMAASMLLFLLVLAGIVTATTTTTDSNIRLPSNGAAGETDGNKQAKSRPWECCDNIEMSVLKIYPPRWRCNDEVKQCAAACENCLQLVPGAGGEDVVFVCDDWYPTTNPGPVCTPRPWGDCCDKAFCTRSLPPICHCADEVASCAAACKECDMVNSSSEPPRYICRDHFTGEPGPMCA |
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| Function | Bowman-Birk type bran trypsin inhibitor [UniProtKB/Swiss-Prot:A2WK50] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0001590 | OsLima_01g0001590.01 | Chr01 | 1212006 | 1212922 | - | NAM | ||
| CDS seq | atgaccatgaaagtgaagagcaccatgatggctgcttccatgctgctcttcctcctcgtcctcgccggcatcgtcaccgccaccaccaccaccaccgacagcaacattcgcctccccagcaacggcgccgccggcgaaacagatggaaacaaacaggcgaaatccagaccgtgggagtgctgcgacaacatcgagatgtccgtgctcaagatctacccgccgcggtggcgttgcaacgacgaggtgaagcagtgcgccgccgcctgcgagaactgcctgcagctggtgcccggggccggcggcgaagatgtcgtcttcgtctgcgacgactggtacccgaccaccaaccctggccccgtctgcacgccgcggccgtggggcgattgctgcgacaaggccttctgcaccaggtctctcccaccgatctgccactgcgccgacgaggtggcgtcgtgcgccgccgcctgcaaggagtgcgacatggtgaattcgtcgtcggagccgcctcgctatatctgccgcgaccacttcaccggcgagcccgggcccatgtgcgcatga
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| Protein seq | MTMKVKSTMMAASMLLFLLVLAGIVTATTTTTDSNIRLPSNGAAGETDGNKQAKSRPWECCDNIEMSVLKIYPPRWRCNDEVKQCAAACENCLQLVPGAGGEDVVFVCDDWYPTTNPGPVCTPRPWGDCCDKAFCTRSLPPICHCADEVASCAAACKECDMVNSSSEPPRYICRDHFTGEPGPMCA |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.135514 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0124000 | RBH | 22.661606 | 28.734602 | 1.139933 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g03320 | RBH | 14.564734 | 18.350563 | 0.278447 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0124000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0001770 | RBH | 8.496048 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0001650 | RBH | 0.0 | 0.0 | 0.264971 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0001770 | RBH | 32.308594 | 0.0 | 1.340904 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0001690 | RBH | 2.279233 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0001770 | RBH | 0.0 | 0.0 | 3.082762 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0022400 | RBH | 16.984268 | 0.3417765 | 3.6881825 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0001700 | RBH | 0.821395 | 0.0 | 0.134400 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0022100 | RBH | 22.2333465 | 0.151785 | 0.0234585 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0001610 | SBH | 0.510125 | 3.134546 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0001800 | SBH | 0.000000 | 83.186020 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0001810 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0001780 | SBH | 7.057431 | 0.0 | 0.259176 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0001680 | RBH | 2.235025 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G001840 | RBH | 44.930805 | 0.0 | 4.953531 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0001750 | SBH | 76.036285 | 32.512402 | 3.995320 |
