Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_01g0000830 | OGI:01001780 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr01:578198-581330 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ttaccaagatagtaaatatatactctcacatcagagcaaaatattttcagacaaggagagcagtttaccttatatccattatccacttcccgtaattaaacatcacaggagaaacatgctaattacacccaaaaaaaacaaccaagctagtactcgtcactacacagtttcagactagtgtttactgtgaccaccaggatttcttccttttccatcatcagaaaaacacccaaaaaagagagccaaaagtaagaacagcactactagtcactagccaagctaaactaagagagaatcagtttcttcatttcatgttgttccatctatctgaagattctgaaagttggtgtctgtctttggctacaagagagacgtggccaccatccacaagaagaagcagaagccattgatgaggttggaagcagacgaggtggccatgaggctggagctcgcctccggcttcctcccgtcccccacgccgccggccaccttgcacaccgtcacccccggcggcgcgtgcgccgcgtccaccgcggcattgctgtagcacaatcccGggttgtcccacgacgcgaaCCTcctccccatcctctggtagaacgccggcgagaactgcagcgtCcccgtcaggttgttcccgttcaggtacagcgcgccgatgttgggcagctcggcgagcctggccggcacgtcgccggtgagccggttgtggtcgagcgccaagaacctcagcctggtcagtgccgccatggattccggtatggctccgacgaggccgaggttggacaggtccagcgtcgcgaggccgcgcagcctctcccacccgagctgccccaggctgcctcccagcgggttgttcgacaggagcaggtcctgcagcgacgccatgccttgcaagaaggacggcaaaccgccggtgaagctgttgttcctgaggtcaagcaatgtcaggctcccgagcccggcgagctccggcggcaagctaccctgcagcaggttgttgctgaggtccatcttgaggagtcccttgaggccacctagcgacgaaggcagagagccggttagagagttgttgctgacgtccatgatcagcagctgctcggcgaaatgcccattaccaagtgacgccgggatctgcccggacagcccgttcccggacaggacgagccgacgcagccgcaccagagacccgagctcggcgggcacggcaccggtgaggttgttctcgacgaacaccagcgactggaggctcgacaggcggccgagcgacgccggtatgggccccgtcaggccagggttggtgcggaactcgagcgtctccaggctgccggcgagcttgtcccagctggtggccggaatgggagtcgggttggtcgccgggaagcagctgtagaaggagagggtcttgaggcgcttgaggtcgaacagctggggactgaacttggcatcagcagagcactgcagtgagttgtcaagaactgggccaatgctcatcactgttgggtaccacagcccattgaacagatcacatgacactccctgcaacaaaattcagaggcatcctgttaattgcttttctccattcaatttgaattcacaaacacactttttaataaaaggagctaaagcttttcttttcctgaattttggaatttacagtacaaatgttagctgtcaccactttcacacacatggaaaggtaccaaatgacgggccagtaaacagaatttttgggtagtacactactggtagtaacagacatggaaggatcacatggttgacagaatttgattaatgtagtaacagagatttgctcctttttatagcagctccaatttcctcgtcagttttatatatcagcatcaaaatgtaagtaattatggtattctgggagggcaaatactaatgtgttaattagatccatgccataaaaggagcgagtcgtgagcgactgttgcttatgagtgagtaacagcagctcaaagtgcagggatgggaaaaaggaagacagagcggcgaaatgtagtggaaaaaagagggagcatctccacagcaaaagaaccaagggatgagaatatcatgagatgaaaagagaagacatgagaatactcctgtagtatctgtatgttaagaaaacatggagatttcaaatcagagagattcttttcatgtgagtggaaagttcttgtccaagagaatctcctatatcgagtaacatcggagacccaatgttttcagaggtctcactcagccacagttgagaaacagggcagccgcaaaatgcagaaacacttcaccaacacagaggctacacacaagaacatgaaattgaaacaaagaaggaacaTACtacaaggatactgctaaaatttggatctttcaaacaaaaataattgcacaaatatctcaagctgcactcttggtgcataacttaatgaagaaatctctagtgcagatcaccctgccctcccaagatcctttgaaccatgaatttgcctcacagaaagaacaggaatttgctcaaagcgactagtatcaagaactgtgtagtagtggtgtgtgcagagagaaaggaaacctgaatgggagaccagccgcaggggtcaggatagagggcggagccattccagcccttgccgacgaatccctcgatggccgcgtagagagccctcttctccttctcctccattggagccgccgccgtggacgccgagccgtccgccgcctcaccttggcccgagcagccatggaggcggctgtgcagggcgatgatgaagagcagcagagaaagagcctgcagctgcaggagctttctgctttgtggttgcctcattgtttggcgcaacaagcactctgccgagcaagcagacctggactggtctggacgctgcaatatagtactcctcgctcagctcaggcagcagcagccatggcggtcactgagctgacttgtgtggagtgttgggtgtgtggcaagcaagatggatggatgtggtgggcttttaggtggcgaataTtatactatgtggctttcgatgagctgcaagaagaagaggaggaggaggaggaggaggaggaaggcgagacattcctatgcaaagcgctgcaaccctgcactgggtctggggatccc
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| CDS seq | atgaggcaaccacaaagcagaaagctcctgcagctgcaggctctttctctgctgctcttcatcatcgccctgcacagccgcctccatggctgctcgggccaaggtgaggcggcggacggctcggcgtccacggcggcggctccaatggaggagaaggagaagagggctctctacgcggccatcgagggattcgtcggcaagggctggaatggctccgccctctatcctgacccctgcggctggtctcccattcagggagtgtcatgtgatctgttcaatgggctgtggtacccaacagtgatgagcattggcccagttcttgacaactcactgcagtgctctgctgatgccaagttcagtccccagctgttcgacctcaagcgcctcaagaccctctccttctacagctgcttcccggcgaccaacccgactcccattccggccaccagctgggacaagctcgccggcagcctggagacgctcgagttccgcaccaaccctggcctgacggggcccataccggcgtcgctcggccgcctgtcgagcctccagtcgctggtgttcgtcgagaacaacctcaccggtgccgtgcccgccgagctcgggtctctggtgcggctgcgtcggctcgtcctgtccgggaacgggctgtccgggcagatcccggcgtcacttggtaatgggcatttcgccgagcagctgctgatcatggacgtcagcaacaactctctaaccggctctctgccttcgtcgctaggtggcctcaagggactcctcaagatggacctcagcaacaacctgctgcagggtagcttgccgccggagctcgccgggctcgggagcctgacattgcttgacctcaggaacaacagcttcaccggcggtttgccgtccttcttgcaaggcatggcgtcgctgcaggacctgctcctgtcgaacaacccgctgggaggcagcctggggcagctcgggtgggagaggctgcgcggcctcgcgacgctggacctgtccaacctcggcctcgtcggagccataccggaatccatggcggcactgaccaggctgaggttcttggcgctcgaccacaaccggctcaccggcgacgtgccggccaggctcgccgagctgcccaacatcggcgcgctgtacctgaacgggaacaacctgacgggGacgctgcagttctcgccggcgttctaccagaggatggggaggAGGttcgcgtcgtgggacaaccCgggattgtgctacagcaatgccgcggtggacgcggcgcacgcgccgccgggggtgacggtgtgcaaggtggccggcggcgtgggggacgggaggaagccggaggcgagctccagcctcatggccacctcgtctgcttccaacctcatcaatggcttctgcttcttcttgtggatggtggccacgtctctcttgtag
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| Protein seq | MRQPQSRKLLQLQALSLLLFIIALHSRLHGCSGQGEAADGSASTAAAPMEEKEKRALYAAIEGFVGKGWNGSALYPDPCGWSPIQGVSCDLFNGLWYPTVMSIGPVLDNSLQCSADAKFSPQLFDLKRLKTLSFYSCFPATNPTPIPATSWDKLAGSLETLEFRTNPGLTGPIPASLGRLSSLQSLVFVENNLTGAVPAELGSLVRLRRLVLSGNGLSGQIPASLGNGHFAEQLLIMDVSNNSLTGSLPSSLGGLKGLLKMDLSNNLLQGSLPPELAGLGSLTLLDLRNNSFTGGLPSFLQGMASLQDLLLSNNPLGGSLGQLGWERLRGLATLDLSNLGLVGAIPESMAALTRLRFLALDHNRLTGDVPARLAELPNIGALYLNGNNLTGTLQFSPAFYQRMGRRFASWDNPGLCYSNAAVDAAHAPPGVTVCKVAGGVGDGRKPEASSSLMATSSASNLINGFCFFLWMVATSLL |
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| Function | Piriformospora indica-insensitive protein 2 [UniProtKB/Swiss-Prot:Q5PP26] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0000830 | OsLima_01g0000830.01 | Chr01 | 578198 | 581330 | - | NAM | ||
| CDS seq | atgaggcaaccacaaagcagaaagctcctgcagctgcaggctctttctctgctgctcttcatcatcgccctgcacagccgcctccatggctgctcgggccaaggtgaggcggcggacggctcggcgtccacggcggcggctccaatggaggagaaggagaagagggctctctacgcggccatcgagggattcgtcggcaagggctggaatggctccgccctctatcctgacccctgcggctggtctcccattcagggagtgtcatgtgatctgttcaatgggctgtggtacccaacagtgatgagcattggcccagttcttgacaactcactgcagtgctctgctgatgccaagttcagtccccagctgttcgacctcaagcgcctcaagaccctctccttctacagctgcttcccggcgaccaacccgactcccattccggccaccagctgggacaagctcgccggcagcctggagacgctcgagttccgcaccaaccctggcctgacggggcccataccggcgtcgctcggccgcctgtcgagcctccagtcgctggtgttcgtcgagaacaacctcaccggtgccgtgcccgccgagctcgggtctctggtgcggctgcgtcggctcgtcctgtccgggaacgggctgtccgggcagatcccggcgtcacttggtaatgggcatttcgccgagcagctgctgatcatggacgtcagcaacaactctctaaccggctctctgccttcgtcgctaggtggcctcaagggactcctcaagatggacctcagcaacaacctgctgcagggtagcttgccgccggagctcgccgggctcgggagcctgacattgcttgacctcaggaacaacagcttcaccggcggtttgccgtccttcttgcaaggcatggcgtcgctgcaggacctgctcctgtcgaacaacccgctgggaggcagcctggggcagctcgggtgggagaggctgcgcggcctcgcgacgctggacctgtccaacctcggcctcgtcggagccataccggaatccatggcggcactgaccaggctgaggttcttggcgctcgaccacaaccggctcaccggcgacgtgccggccaggctcgccgagctgcccaacatcggcgcgctgtacctgaacgggaacaacctgacgggGacgctgcagttctcgccggcgttctaccagaggatggggaggAGGttcgcgtcgtgggacaaccCgggattgtgctacagcaatgccgcggtggacgcggcgcacgcgccgccgggggtgacggtgtgcaaggtggccggcggcgtgggggacgggaggaagccggaggcgagctccagcctcatggccacctcgtctgcttccaacctcatcaatggcttctgcttcttcttgtggatggtggccacgtctctcttgtag
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| Protein seq | MRQPQSRKLLQLQALSLLLFIIALHSRLHGCSGQGEAADGSASTAAAPMEEKEKRALYAAIEGFVGKGWNGSALYPDPCGWSPIQGVSCDLFNGLWYPTVMSIGPVLDNSLQCSADAKFSPQLFDLKRLKTLSFYSCFPATNPTPIPATSWDKLAGSLETLEFRTNPGLTGPIPASLGRLSSLQSLVFVENNLTGAVPAELGSLVRLRRLVLSGNGLSGQIPASLGNGHFAEQLLIMDVSNNSLTGSLPSSLGGLKGLLKMDLSNNLLQGSLPPELAGLGSLTLLDLRNNSFTGGLPSFLQGMASLQDLLLSNNPLGGSLGQLGWERLRGLATLDLSNLGLVGAIPESMAALTRLRFLALDHNRLTGDVPARLAELPNIGALYLNGNNLTGTLQFSPAFYQRMGRRFASWDNPGLCYSNAAVDAAHAPPGVTVCKVAGGVGDGRKPEASSSLMATSSASNLINGFCFFLWMVATSLL
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0000830 | OsLima_01g0000830.02 | Chr01 | 578198 | 581330 | - | NAM | ||
| CDS seq | atgaggcaaccacaaagcagaaagctcctgcagctgcaggctctttctctgctgctcttcatcatcgccctgcacagccgcctccatggctgctcgggccaaggtgaggcggcggacggctcggcgtccacggcggcggctccaatggaggagaaggagaagagggctctctacgcggccatcgagggattcgtcggcaagggctggaatggctccgccctctatcctgacccctgcggctggtctcccattcagggagtgtcatgtgatctgttcaatgggctgtggtacccaacagtgatgagcattggcccagttcttgacaactcactgcagtgctctgctgatgccaagttcagtccccagctgttcgacctcaagcgcctcaagaccctctccttctacagctgcttcccggcgaccaacccgactcccattccggccaccagctgggacaagctcgccggcagcctggagacgctcgagttccgcaccaaccctggcctgacggggcccataccggcgtcgctcggccgcctgtcgagcctccagtcgctggtgttcgtcgagaacaacctcaccggtgccgtgcccgccgagctcgggtctctggtgcggctgcgtcggctcgtcctgtccgggaacgggctgtccgggcagatcccggcgtcacttggtggcctcaagggactcctcaagatggacctcagcaacaacctgctgcagggtagcttgccgccggagctcgccgggctcgggagcctgacattgcttgacctcaggaacaacagcttcaccggcggtttgccgtccttcttgcaaggcatggcgtcgctgcaggacctgctcctgtcgaacaacccgctgggaggcagcctggggcagctcgggtgggagaggctgcgcggcctcgcgacgctggacctgtccaacctcggcctcgtcggagccataccggaatccatggcggcactgaccaggctgaggttcttggcgctcgaccacaaccggctcaccggcgacgtgccggccaggctcgccgagctgcccaacatcggcgcgctgtacctgaacgggaacaacctgacgggGacgctgcagttctcgccggcgttctaccagaggatggggaggAGGttcgcgtcgtgggacaaccCgggattgtgctacagcaatgccgcggtggacgcggcgcacgcgccgccgggggtgacggtgtgcaaggtggccggcggcgtgggggacgggaggaagccggaggcgagctccagcctcatggccacctcgtctgcttccaacctcatcaatggcttctgcttcttcttgtggatggtggccacgtctctcttgtag
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| Protein seq | MRQPQSRKLLQLQALSLLLFIIALHSRLHGCSGQGEAADGSASTAAAPMEEKEKRALYAAIEGFVGKGWNGSALYPDPCGWSPIQGVSCDLFNGLWYPTVMSIGPVLDNSLQCSADAKFSPQLFDLKRLKTLSFYSCFPATNPTPIPATSWDKLAGSLETLEFRTNPGLTGPIPASLGRLSSLQSLVFVENNLTGAVPAELGSLVRLRRLVLSGNGLSGQIPASLGGLKGLLKMDLSNNLLQGSLPPELAGLGSLTLLDLRNNSFTGGLPSFLQGMASLQDLLLSNNPLGGSLGQLGWERLRGLATLDLSNLGLVGAIPESMAALTRLRFLALDHNRLTGDVPARLAELPNIGALYLNGNNLTGTLQFSPAFYQRMGRRFASWDNPGLCYSNAAVDAAHAPPGVTVCKVAGGVGDGRKPEASSSLMATSSASNLINGFCFFLWMVATSLL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| RI | Chr01 | 578198 | 579736 | - | OsLima_01g0000830.01 | OsLima_01g0000830.02,OsLima_01g0000830.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0110800 | RBH | 0.000000 | 0.256138 | 0.304215 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g02060 | RBH | 0.000000 | 0.161301 | 0.146889 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0110800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0000840 | RBH | 0.0 | 0.0 | 0.596420 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0000830 | RBH | 0.0 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0000830 | RBH | 0.000000 | 0.0 | 0.950555 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0000840 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0000820 | RBH | 0.0 | 0.000000 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0009100 | RBH | 6.548839 | 0.4911055 | 19.9299935 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0000810 | RBH | 0.0 | 0.0 | 0.230824 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0010800 | RBH | 6.526151 | 0.1904645 | 41.2436315 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0000860 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0000830 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0000830 | RBH | 0.175055 | 0.0 | 0.184435 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0000810 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G000820 | RBH | 0.0 | 0.0 | 1.359552 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0000780 | RBH | 0.0 | 0.0 | 0.375379 |
