Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_01g0000100 | OGI:01000160 | 13/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr01:64306-65428 | ||||||||
| Gene Symbol | RLCK1, OsRLCK1 | ||||||||||
| DNA seq | ATGGTCGCGGTGGCGACGGCGCGCGCGCTCGCGTACCTTCACCATGACTGCAAACCTCAGGTGCTACACCTCAACATCAAATCAAGAAGCATCCTGTTGGACAAAGAACACGAAGCAAAGCTCTTAGATTTCGGGCTAGCCAAGCTTCTGCCTGAACCGAGCAACCTACCAGACTACGTTGCGCCGGAGCTAGCGTCGTCGTCGTCGCTGAGCTCGAGGCACGGCGGCGACAAGTGCGACATGTTCAGCTTCGGGGTGGTGTTAATTGCTGGATATGGTGACGGGGCGGAAGCCGGTGAGCAGCCGCCATGGACGACAGGGCACGGTGGTGGTGGTGGTGGTCCTGCGCGACTACGTGAGGGAGATGGTGGAGAACAGCACAGTCTCAGGCTGCTTCGACCTGAGCATGAGGAGAGTCGTCGAGGCAAATCCTTCCAAGTCTCTGCCGGCGGCGTAGGTCCTGCCGGCTATGCCGTCGAAGGGTGGCGCAGGGTCGCCGTCGTCGAAGGCGGTGGAGGTGGATTACTACGCGTCGACCCAGCCAAAGAAGCCAGAGGGGCCGCCGACGGTCACAGCAGTCCAAAAGGATTGCGCCCCACCGGCGGCGCCCAAGCCGGCGGCCGCTACGGCACCACGATGCCCGTTCCGGCGACGCCATCGACGTCTCCTCCTTGGAAGGAGTATGCTCCGGCGGCGCCAGGTGTTGTGCCTTTGAAGCAGCCTTCTTCCCAGGCGGCGCCAGCAGGCGTGGTGCCGATGCAGCCTTCTTCCTCGACGACGGCGGCGACAAAGAAGAGAAAAATGATTGAGGAATAAGGGAGAAAAAAATAACGTGCCACGTCATCATCTATATGGCTGGTCACGTGGACCACGGTCAAATAAGATTTTGGACCGAGATGATACAATAAACCAAGTTTAGATATCTTAATACACACTTTACAAGTTCGTGGATTTAGATGAAACATGCTTACAAGTTTAAGAACCGCTAGTGTAATTTAGTCTTGTTAAAATGCCACTAACAACATTGACTCATTTGTGTGTATACGTGTGTGTGTTTTTTTTGGCATTGTGGGGTTAATAATTCATTTTGATTTTTTCTTCAATATTTCCCACAGCCCGGTAA
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| CDS seq | ATGGTCGCGGTGGCGACGGCGCGCGCGCTCGCGTACCTTCACCATGACTGCAAACCTCAGGTGCTACACCTCAACATCAAATCAAGAAGCATCCTGTTGGACAAAGAACACGAAGCAAAGCTCTTAGATTTCGGGCTAGCCAAGCTTCTGCCTGAACCGAGCAACCTACCAGACTACGTTGCGCCGGAGCTAGCGTCGTCGTCGTCGCTGAGCTCGAGGCACGGCGGCGACAAGTGCGACATGTTCAGCTTCGGGGTGGTGTTAATTGCTGGATATGGTGACGGGGCGGAAGCCGGTGAGCAGCCGCCATGGACGACAGGGCACGGTGGTGGTGGTGGTGGTCCTGCGCGACTACGTGAGGGAGATGGTGGAGAACAGCACAGTCTCAGGCTGCTTCGACCTGAGCATGAGGAGAGTCGTCGAGGCAAATCCTTCCAAGTCTCTGCCGGCGGCGTAGGTCCTGCCGGCTATGCCGTCGAAGGGTGGCGCAGGGTCGCCGTCGTCGAAGGCGGTGGAGGTGGATTACTACGCGTCGACCCAGCCAAAGAAGCCAGAGGGGCCGCCGACGGTCACAGCAGTCCAAAAGGATTGCGCCCCACCGGCGGCGCCCAAGCCGGCGGCCGCTACGGCACCACGATGCCCGTTCCGGCGACGCCATCGACGTCTCCTCCTTGGAAGGAGTATGCTCCGGCGGCGCCAGCCCGGTAA
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| Protein seq | MVAVATARALAYLHHDCKPQVLHLNIKSRSILLDKEHEAKLLDFGLAKLLPEPSNLPDYVAPELASSSSLSSRHGGDKCDMFSFGVVLIAGYGDGAEAGEQPPWTTGHGGGGGGPARLREGDGGEQHSLRLLRPEHEESRRGKSFQVSAGGVGPAGYAVEGWRRVAVVEGGGGGLLRVDPAKEARGAADGHSSPKGLRPTGGAQAGGRYGTTMPVPATPSTSPPWKEYAPAAPAR |
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| Function | Probable LRR receptor-like serine/threonine-protein kinase At1g12460 [UniProtKB/Swiss-Prot:C0LGE4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0000100 | OsLima_01g0000100.01 | Chr01 | 64306 | 65428 | + | NAM | ||
| CDS seq | ATGGTCGCGGTGGCGACGGCGCGCGCGCTCGCGTACCTTCACCATGACTGCAAACCTCAGGTGCTACACCTCAACATCAAATCAAGAAGCATCCTGTTGGACAAAGAACACGAAGCAAAGCTCTTAGATTTCGGGCTAGCCAAGCTTCTGCCTGAACCGAGCAACCTACCAGACTACGTTGCGCCGGAGCTAGCGTCGTCGTCGTCGCTGAGCTCGAGGCACGGCGGCGACAAGTGCGACATGTTCAGCTTCGGGGTGGTGTTAATTGCTGGATATGGTGACGGGGCGGAAGCCGGTGAGCAGCCGCCATGGACGACAGGGCACGGTGGTGGTGGTGGTGGTCCTGCGCGACTACGTGAGGGAGATGGTGGAGAACAGCACAGTCTCAGGCTGCTTCGACCTGAGCATGAGGAGAGTCGTCGAGGCAAATCCTTCCAAGTCTCTGCCGGCGGCGTAGGTCCTGCCGGCTATGCCGTCGAAGGGTGGCGCAGGGTCGCCGTCGTCGAAGGCGGTGGAGGTGGATTACTACGCGTCGACCCAGCCAAAGAAGCCAGAGGGGCCGCCGACGGTCACAGCAGTCCAAAAGGATTGCGCCCCACCGGCGGCGCCCAAGCCGGCGGCCGCTACGGCACCACGATGCCCGTTCCGGCGACGCCATCGACGTCTCCTCCTTGGAAGGAGTATGCTCCGGCGGCGCCAGCCCGGTAA
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| Protein seq | MVAVATARALAYLHHDCKPQVLHLNIKSRSILLDKEHEAKLLDFGLAKLLPEPSNLPDYVAPELASSSSLSSRHGGDKCDMFSFGVVLIAGYGDGAEAGEQPPWTTGHGGGGGGPARLREGDGGEQHSLRLLRPEHEESRRGKSFQVSAGGVGPAGYAVEGWRRVAVVEGGGGGLLRVDPAKEARGAADGHSSPKGLRPTGGAQAGGRYGTTMPVPATPSTSPPWKEYAPAAPAR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0137950 | SBH | 0.000000 | 0.000000 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g01110 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0137950 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0000100 | RBH | 0.0 | 0.0 | 0.640337 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0000100 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0000100 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0000100 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0000100 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0000800 | RBH | 0.0963755 | 0.1046355 | 0.09118 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0000100 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0014500 | SBH | 0.0265545 | 0.0553125 | 0.153599 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0000100 | RBH | 0.000000 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0000100 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0000090 | RBH | 0.000000 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0000100 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0001160 | SBH | 0.000000 | 0.000000 | 0.000000 |
