Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_Ung0071630 | OGI:99065200 | 1/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | ChrUN-Ctg539:66912-68964 | ||||||||
| Gene Symbol | OsFbox607, Os_F0045 | ||||||||||
| DNA seq | tcatagaagggtaatcatgtggcggtactcgcttctgagaaggcggttctcggccatcatccttcgaacgagcatcagatcagcttgctccgaccaatcaaggcgcgggctccatgcaaccctgaccatcggatcaacgatcagacggtcaagattgggtgcactcctaagaatttggaacgccagttcaagctgtccacgtgtactatcgaatcctgtcatgcgtacagtcctgagatgcttgtgcacacacactgaacttaatttatctaactgaccacgctttgtgtagatcggtgcactaggacagtacatctgcatatatggaagaacaaataaataattcactgcaagttagtgaaaatcttggagattggataacctttttatttacagaaatatggttcaatttggaatgttcagaagcttaattgtgatgttttagcaattggtcttacattgagttccagctcttccagacatggtgccatctccagtagcgaagccaggcgaagaattccgctgccattgtccgaacttccctggacatcgatgttcaagatcagatgcttcagattgttgaacctgccaatgctttctgcaaatcctcgcgactaaaagtcgatacagtcatggtcagaaaggtgagatagatatgtgaagctgcatatatcatgaacattagggtgaatactaactcagtttcacttgattttgctgcactcacctcagttctgactgtcatgttgatggagagacgatcctgcacgtgataaagaccaccagctggaagctcagtggagacatagctcaaacaatccgagaacgacaccagctcgatcgtcgccaccgacaagttcaggcattcggcaagcacaatcggtatcggatagttggtgagctcgaattctgtcagattaggtgcttgcagatgcagcttctgcagcctacacttgcgcacgcacagataccgcaaccggcgcaacttctggcagatgctccgatgctgcaatgaacactgtgtcaggcttaaccactccaaaacattgcagtgggagagcaggcactggagatctcccctgatggacaccatgtgcaatccaagcttcttcaggtttgtgaagccactgagattgagatcaggaggtattgtcagggagacgaaccctagggagagatacctgacgcaattgtcaccagagaagaagatatgcagggggaaactgtacatgccattcatcatgtcagtgtcctcttgatcttctggacagagatcaagaacaatctgcccagctcttgaagcagcagagaagctaacccatccgtcaatgtgatgtgcatcatctctcccaaggagagggaatttcactatgaaattcttgagagaggacgacctgaactgccacaagatgctgtttacacgaaagatgaatgtagcagccaggtggtcgtctgttatgctgccatggagcattgtttttctggtgaagacaagatttgggtagcatctccaaagccttctccagctcctagacaccatgctcgtccttgcagcttctttgaaacgtaatcgtgaaaatatgtcgcagataatatcctgcagaagcagcagagaactaagggaaatagctcagcaaattaaccttttttttttggagtccttttgccaagttattttctgcattcccttgtaacaatctctactataacaaaaaaaactctcaccaccagtctgtgacatcttctaagggcagatacatagatattttgtgcatgtagcttggctccatgattgaagtttgcttgcaagttagtatatgtttttccatgagaaatatatatatatatataactttcaagtttagaatttactatatgctttgttaaattcgttgcaatgcaggtattttgctagttaagtaagaagtacatggaaaatcatggttttacttacaggaggtaggcggtgaagccgaaaaccaccatatcttgccctcttattgagaccagatctgacacatcctttactgtttgatactttaccataaaccat
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| CDS seq | atggtttatggtaaagtatcaaacagtaaaggatgtgtcagatctggtctcaataagagggcaagatatggtggttttcggcttcaccgcctacctcctgatattatctgcgacatattttcacgattacgtttcaaagaagctgcaaggacgagcatggtgtctaggagctggagaaggctttggagatgctacccaaatcttgtcttcaccagaaaaacaatgctccatggcagcataacagacgaccacctggctgctacattcatctttcgtgtaaacagcatcttgtggcagttcaggtcgtcctctctcaagaatttcatagtgaaattccctctccttgggagagatgatgcacatcacattgacggatgggttagcttctctgctgcttcaagagctgggcagattgttcttgatctctgtccagaagatcaagaggacactgacatgatgaatggcatgtacagtttccccctgcatatcttcttctctggtgacaattgcgtcaggtatctctccctagggttcgtctccctgacaatacctcctgatctcaatctcagtggcttcacaaacctgaagaagcttggattgcacatggtgtccatcaggggagatctccagtgcctgctctcccactgcaatgttttggagtggttaagcctgacacagtgttcattgcagcatcggagcatctgccagaagttgcgccggttgcggtatctgtgcgtgcgcaagtgtaggctgcagaagctgcatctgcaagcacctaatctgacagaattcgagctcaccaactatccgataccgattgtgcttgccgaatgcctgaacttgtcggtggcgacgatcgagctggtgtcgttctcggattgtttgagctatgtctccactgagcttccagctggtggtctttatcacgtgcaggatcgtctctccatcaacatgacagtcagaactgagtcgcgaggatttgcagaaagcattggcaggttcaacaatctgaagcatctgatcttgaacatcgatgtccagggaagttcggacaatggcagcggaattcttcgcctggcttcgctactggagatggcaccatgtctggaagagctggaactcaatatgtactgtcctagtgcaccgatctacacaaagcgtggtcagttagataaattaagttcagtgtgtgtgcacaagcatctcaggactgtacgcatgacaggattcgatagtacacgtggacagcttgaactggcgttccaaattcttaggagtgcacccaatcttgaccgtctgatcgttgatccgatggtcagggttgcatggagcccgcgccttgattggtcggagcaagctgatctgatgctcgttcgaaggatgatggccgagaaccgccttctcagaagcgagtaccgccacatgattacccttctatga
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| Protein seq | MVYGKVSNSKGCVRSGLNKRARYGGFRLHRLPPDIICDIFSRLRFKEAARTSMVSRSWRRLWRCYPNLVFTRKTMLHGSITDDHLAATFIFRVNSILWQFRSSSLKNFIVKFPLLGRDDAHHIDGWVSFSAASRAGQIVLDLCPEDQEDTDMMNGMYSFPLHIFFSGDNCVRYLSLGFVSLTIPPDLNLSGFTNLKKLGLHMVSIRGDLQCLLSHCNVLEWLSLTQCSLQHRSICQKLRRLRYLCVRKCRLQKLHLQAPNLTEFELTNYPIPIVLAECLNLSVATIELVSFSDCLSYVSTELPAGGLYHVQDRLSINMTVRTESRGFAESIGRFNNLKHLILNIDVQGSSDNGSGILRLASLLEMAPCLEELELNMYCPSAPIYTKRGQLDKLSSVCVHKHLRTVRMTGFDSTRGQLELAFQILRSAPNLDRLIVDPMVRVAWSPRLDWSEQADLMLVRRMMAENRLLRSEYRHMITLL |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_Ung0071630 | OsLiXu_Ung0071630.01 | ChrUN-Ctg539 | 66912 | 68964 | - | NAM | ||
| CDS seq | atggtttatggtaaagtatcaaacagtaaaggatgtgtcagatctggtctcaataagagggcaagatatggtggttttcggcttcaccgcctacctcctgatattatctgcgacatattttcacgattacgtttcaaagaagctgcaaggacgagcatggtgtctaggagctggagaaggctttggagatgctacccaaatcttgtcttcaccagaaaaacaatgctccatggcagcataacagacgaccacctggctgctacattcatctttcgtgtaaacagcatcttgtggcagttcaggtcgtcctctctcaagaatttcatagtgaaattccctctccttgggagagatgatgcacatcacattgacggatgggttagcttctctgctgcttcaagagctgggcagattgttcttgatctctgtccagaagatcaagaggacactgacatgatgaatggcatgtacagtttccccctgcatatcttcttctctggtgacaattgcgtcaggtatctctccctagggttcgtctccctgacaatacctcctgatctcaatctcagtggcttcacaaacctgaagaagcttggattgcacatggtgtccatcaggggagatctccagtgcctgctctcccactgcaatgttttggagtggttaagcctgacacagtgttcattgcagcatcggagcatctgccagaagttgcgccggttgcggtatctgtgcgtgcgcaagtgtaggctgcagaagctgcatctgcaagcacctaatctgacagaattcgagctcaccaactatccgataccgattgtgcttgccgaatgcctgaacttgtcggtggcgacgatcgagctggtgtcgttctcggattgtttgagctatgtctccactgagcttccagctggtggtctttatcacgtgcaggatcgtctctccatcaacatgacagtcagaactgagtcgcgaggatttgcagaaagcattggcaggttcaacaatctgaagcatctgatcttgaacatcgatgtccagggaagttcggacaatggcagcggaattcttcgcctggcttcgctactggagatggcaccatgtctggaagagctggaactcaatatgtactgtcctagtgcaccgatctacacaaagcgtggtcagttagataaattaagttcagtgtgtgtgcacaagcatctcaggactgtacgcatgacaggattcgatagtacacgtggacagcttgaactggcgttccaaattcttaggagtgcacccaatcttgaccgtctgatcgttgatccgatggtcagggttgcatggagcccgcgccttgattggtcggagcaagctgatctgatgctcgttcgaaggatgatggccgagaaccgccttctcagaagcgagtaccgccacatgattacccttctatga
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| Protein seq | MVYGKVSNSKGCVRSGLNKRARYGGFRLHRLPPDIICDIFSRLRFKEAARTSMVSRSWRRLWRCYPNLVFTRKTMLHGSITDDHLAATFIFRVNSILWQFRSSSLKNFIVKFPLLGRDDAHHIDGWVSFSAASRAGQIVLDLCPEDQEDTDMMNGMYSFPLHIFFSGDNCVRYLSLGFVSLTIPPDLNLSGFTNLKKLGLHMVSIRGDLQCLLSHCNVLEWLSLTQCSLQHRSICQKLRRLRYLCVRKCRLQKLHLQAPNLTEFELTNYPIPIVLAECLNLSVATIELVSFSDCLSYVSTELPAGGLYHVQDRLSINMTVRTESRGFAESIGRFNNLKHLILNIDVQGSSDNGSGILRLASLLEMAPCLEELELNMYCPSAPIYTKRGQLDKLSSVCVHKHLRTVRMTGFDSTRGQLELAFQILRSAPNLDRLIVDPMVRVAWSPRLDWSEQADLMLVRRMMAENRLLRSEYRHMITLL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0539600 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g33310 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0539600 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0016360 | SBH | 0.936513 | 5.052892 | 7.065414 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0016300 | SBH | 0.079007 | 3.304716 | 0.802019 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0016290 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0309500 | SBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0016540 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0317700 | SBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0016490 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0016470 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0016090 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0015870 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0016180 | SBH | 0.076093 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G015980 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0016420 | SBH | 0.0 | 0.0 | 0.0 |
