Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_Ung0071020 | OGI:99064700 | 1/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | ChrUN-Ctg534:336726-345971 | ||||||||
| Gene Symbol | SPL19, OsSPL19 | ||||||||||
| DNA seq | ttacggcttgcgacgaggcggcgattctgctgaaagaagagggggcgaactgcggtggagctgttgcgctggagatgccggcagcgggggagggatgcagcgacgatgacagaagagagagagcacactccgggtccagcccgtggggacgccgttgcatgcgctgcgggttgtggtaatgttggctccatcttctggggaagagaagggccgcaggagatcgtggcgcgctgcgccgaggccgctcccgccatcttgcataaaggggaactgcttcagttcccggaaggtccctgagaatgagatggagaagggagggtgacgatcaagcggacgcattaaggcgtcggcgttctgatcagctatcggaaatgtttgtgggtagactgaaaactgattcgctgcaaagacaaaatagttttagtcaagagaatatattggatacatttcttgtgcaagcaattcaagaaaaagttgatagctctagtgaatgaacatgagaaaaatcttagtttaatagaggtccatcgaaatctactcatcttgacttagtattattgtgctatggtttactagaaattttctaataagctaatggggaaagactgagcatgattgggttccatttgacatcgattattttcagcttctaacaacctaacaagcatatcgaagcaatgttcaattcttcaagcacagtaagcatgcctttttctgccagacctaaaagatacataatatgtacattatttcctgtgacaatataagtaggtaaagatgtagtttgttataactgcagacagagaatgaacagctaaccaattctacatacagtaacggtaatacagtatcgaaatgtaatcaagaaacagccaggaaaaggatcactacaatttttcaacatatataactcagtagttgcaatgtacaaaccttgatgatacggaaggaaactcctagggttcaatgcatcatgttgtggctttcttcgacgcctgttatgaccatccagccgtttccggcaactttttttcccatcgtcaaactcagccagattgtgaaatctgcaaatacagagttatgttgtattgttgttacatggccctcaacatattcagaacatgtacactgaacctgtactgcagattcaaattcacactaacagttgtatttgcatagttctcatacgccatgtaggattcacagaagaaaatttagccaagtagtagtCataacagaaatggattattttaactgactgtcccttaatcactatgcttatagtgcactgctgattagcagcatagacttcgtggtcaattctaaagttaaaagtagaaaatataaaactgactacttatagttctgcaattctgggattgtcctctagtccatgatgtataaaccagtggtaggtaatataaattcagttatactaggagttaatcttagctttagaatgcacaccagatatcaagtgtaatttgtttcaaaaagctactaagtgtaatttcatatataaagccaacatcagaaagatgaacaaaataatacaaagccaatatcagagagatggacaaaataaagacatggaccatgagattttgtgttcaagaaaattatgataagcatggaagcaaatagttttactttcttcttttctctgagctatgcttgaaattctcaggcaattattgccaaattttgaaatacatgttcactctagtgttgattacggcatttacaatatttatctttgtaaatgtcacattgtgtgctctcatggaatgtagtagaaattgtaccggcccagatgtctttgtggttctatctgatcgcaataattagttcctaatattgattgataacaaagattgaatttgcaaggttaatcaccatgtaatgtgaaatttaaaaatatatcgaacagatccatgtaatttagctggaaaccactttatcctgtggctattctcgtttattgttctcccgttgataaatggagactacaatgcctggtagcaccttctgttgggatgctccaacatcaacttttttaatgagggggttggaagatggaatctgaatccaaataaaccgttttcagttcattttatatatctggtttttaataaattctgctgacaactttttcatacaagatcattcgaaatggtgaattgccactgaaaattaagaatattttattagagggatcattctcactaaggacaagtatggctcatgtgtttggtacaggggcagctgcctcatcctacacaagataatgttctatgcgtataactgaaaaaacatgtggtctgttttccagaaaaagaacaagtgaactagtcaagtagatatatcagggaggaaaggatggagggttgcatctgagagcatgaggctagagcaatgtagcaggaaagtctacaaattgctagctgctgaagtcttttttaccagttgatatagtttattctgttaggctgtggtgatgtctttgtctctttgaaacttgtgtggttataattagtatctctggttatatttacatgtcaatatgggagacagaaatgttgctttatcttcactctaagcaatgcatctgtatttgatgccatttcctgaactaacagaagaataaattatctataattgtttgcctgtcatattggtaagaaaaagggcatgactatgctgcccaaaaatacagatgcaagtacctttgaagaccgttacaaaaggtcatgccaaataactacagcaagttaggaactctcagggtttacctgatttcaaatttagtttcagtgaatgggaagagcctcatatgttgttgtgttgtaggttacaaagtggtatcagattttttttaaaaaaaaatgtattcttgaagtggcatatcctcaaagtcaatctttagagtggcatttctttaaatgccacattaaaattagattggtgatcttctacttaactggacaacatatatcaaactattggctctcatgtgtgctctgcacagcaaccacagtttcctagctactcaaggtcaagttgggcattgggtagcgttattgatgaatgtcatgctgtcaagtatattgttgtagcccagaaaaaccttggctgattcgcgtgcaccagaggggcagagggtgctcatggctgctgcatctcagcatgacacgcttacacgggctggctggattcacatgcattaaattgtatatatgcagatctgcttggctactgccaattagtgtatcaaacttacatgtttatgcatgaaattggcaatctaaacgtgtcaattgtgaatccatgtattcatattaagccaagcacaaacgcacatatgggatccaagaggaaagaataagaaaaacaatcgtctagaagataaaaggaaagatcatgcaagctaaaaaatatggagttcagaactgcttttcaggatgctaatgtcatgcctaggactggcagcccaggatatccaaggaaaattctgccttagtttatgtctctccaagacatggtgtgggctcaggtcgacaaacagtcctagactcctagttagatggaacacaccttcaattatctaccaagtccatttgcttacttggttgtttatcttttatattactagcttaactatgtcgctctgattaatagaagatgagtatttgtgtcaagtccaagtcaagtagagccttcagccaagtcctatcagtgttaacccaacatgtgatctgagttttcagtatgaattaagccaccatactgtgtgttgaccattgaccattagggacttagggtagactcatgttatcgactttgaaagttcttgttaaaagctttgcatctgttcagcaaaattctgtatgtctgttcttgacagcaagatcaagttttctgtgttcttggttccaattccttgttctatgctcccttctactctgagataccatgcccccaaacacagcacgatttcttatcgaggtttggtcgtcctatatgccccccattcccaaccccccccccccctcaataaaaaaaaaaaaactaaatgagagaaagacaggggtaccattagttggagtacaaggtaatatgaaatttatcattgcaattcttatgtaaatctaaccttttcatgtcttcgcacattataacaattgttgcctatataaatgcacgtaagagtaagagctcaccaaacccaaagaaataaaggtacctttttttgagtctggtccgtgtgggagctgaatcaaataacgacaactagAaaaaagaaattccttggcatcaaacacattatattatttgaagaaagagtcataaccatttataaagagaaaaattcacaaaactacaaatacaatgtcaaaattatcacaacgttgtattgcaaaactgtagacttagaattgaatttataaaaaaaacctacagaattaaaccacaatattgctaaagtatacccttttcaaaaaaaattttttagacaaactacagatttagaactgatttcattacaagttgcagatttaaaagttccatcaaagataaccatcctaaggtggaactctcaaatgtactttttgtggtaaattatgtgctagattggcatatatatttgacattaaaatgtatagttttctgatattgtggcttaaatctatagtttgatgatagtttgcagaagtatatgtagttttgtgaaacttactcttctacacatgtgctacaaagctatatttagctgtatgccatacaaatacccttatattaaaagtagagttcctttgTtttttgggtaatgcgtatcatatgaatataatgttattatcgatatatgctagtattcaccatttgttaggtccataaaataaacattgtagaccaatctctttttcctatttacgagagaaactatagggtgccttttagattatcatgaggattccagatcagaaagcaaaggcgtatgacgatggtgttttgatttattttatgatctactagttaagcacatgtggatttgtgaaaaagaaaagtataaatttgatggtagagagagtagtatcagcaaaccaaactcttccctaacaatgattaaacacgcttcattaccaatgtaacttgagatgtgagttgttcatacttggtagagattataccataccctcaaacagaggggacatttacttccatcctgcttctgcaaaattgctgcaacatggtgtgatgaggagagagtagtgacaatcaggaggttggatcttgagaaatctaaaaggtatttataacattagcgtgagcaaatgacacaaccataagctcaagaggaagcttcaaagggttgtcaagacacacaacaaggaccattgaatgggctctcgatggagatggtaatatatgaggaggaacttcacctcctagttagtctgctcctccattctctttttgttctttgggccatcacattagtctacttacctgaacttttgccatgttctaatcttctatatcatagtatgcaagtgatagtagtctttaagaacaaattacaggagctttcatagtgaactgtttgcaagttctcatgtgcacgatcctttgtctcaacattggacgctccttttttctaattccatattgacaagcaggccaggaaggttaaaataaagtggaaacaagcaccttactcatatggaaattgaagtaaacatttttatagttgatttcaaaaggtaacaagactcatttgctcatagtatagttgataacctttttatccttgatttcaaatggtaagattcaaagtttggtttgaaatcttgaaaggagttttcagcttttcacaagaattcgagtttttgcagctccagaaaaacatccaaaaaaaacgtagcttaaggcagcaagtaatcgaagcaaccgatgagtggtcagttagttgataattgtcattggctagtcaactaggaggtagcatggcaacttgactagactagttaccggcttaatgccctttttctaaatgcccatggtggggcgataaattggtcatagtgtcattaaaatcaaatgatttggtataccaagaggaacaatacaaatgtaggtgcaatgatttttaaaaacaaaatacagaggacagatgtgctatcttcttaaagctctgatggtcgtgctaacagaaaccacagtaagcaaagacaacatgctgatggttttaacagaaggaaatggacaagtacggcatcttcttatagttgggaggatggaattgcatataagattagtttgattacatctctagattgtctaagattaatactttattctaatgcaaggtcaccttcatagacatgataaatttctgctaactcaaatacagataagtgtgtggttatgcacaaaggttgagcacaacagatcactgaggtaaataattctttttcttactgatgagtctgacaatatgccagtaaaaagaggatgacaacaattatcagattttccattgggttactatgaggtctctgcagtttgtactttgccatccattgctccaattcggtgttatcttactaaccagtgtcatacaggaatgaataattaggagatcaaggttatggcatgatttcttccttcctaatgtgtcattgaaggatgctttgatcaatcagcatgacttatctattctagactacaagggatataacgacacttcaaatatgacaggagaatttgtaaacaggattactcaactagagttatctcctggcgtcttcagtaactgtagaccaacaagattgaaccagagaaacaaagacataaatattgtagatgcatgccagaaatttgatttaaaaacaagatgtttcttagttatacccagaaaataaacaagatgactcaactgtggtgattctctcagtaactatactgtcaagcacagatcatagaacacccaaaatacagccagctagaacagatatattctggtatcatacatgagaatgcaatatgtacacagcctaattggatgagacatgtaagaggtaaaataaacccataaagtaatgatcatttgtaggttccaggaattgaacaagatgagtggaaaaccaattttgcagtataagtaaaatgattataattgttgtcctcaaccaactatatacacaatgataatgtattttgcattctcttgaggtttggtaatgatggaagaaggatgaggggatcgcaacatggaatggaaatgacaattggatctttattatctcaaaattgagtttgttagcctgttccccaagctttgaacctgatcaagctcttgaaattagcacatcccacaattggaaaatagaattgttgtgtgggagatgagatggtaatatctaggaaagtccgaatagaatagaggacctatttggcttgagcaacaatcctattcagcacaatcaaaaccttactgcgcttatttttacaatgagatgaatcttgagttagaagagtattgtcatattctgaattctgatataaaatatcacaagatctcttttgatacagaagtggagttatcattctatgtcattgcttaatttagtagttgagaaattatatggcctaagaagataataatcactgtttattcacacaagagtctagtttgaaaaactgttaaagtattattatctgagaacaaagcggaaatcatcagtgcatattaaactggatgtctgaacctctccaactcagttatgatgcagtcaaatggttaacagttcagtcaagatttcactaaatgatactacgttttactttctcgtaccactttcagtcagatacacgcctgtaatagaactccaaatattttagaaaccatataatccacccaaaaatatgttcagctatttgttttctcctactgtcatgaaactccagaatagtttactacgctaaacacagcaaagaaactgagaatcagggaggagagagtataacacaaccaaaggtaacagctttcagttttgcatgcccacgctctagcgagtaacccatgaaataacccaaacgctaacgggagtacccactgaacaacactactatacaatactagaccttaacttgtttcatccagatcttgtgaactgaaactgcttcctgttcagtctcactgaaacacacccagtttgaagaaccaaaacttaatttgcatggtctctaagcatgaagccaatttcaacacccgctccgccccgtcaatcataagaaagattcggcgatgagatgcggaataatacaggaagaaaacaaaaaccctacacaagcaagcaaagcatgtcatctgcccacaccaacagccttcttaaaatagtatccggtgagattaaattatccgcgacatcagagccctaaaggccaccaaattaccaacccaattgtttaatcctcgacaaatagcataggtgagattaaataatcccggagccatcagatcctaactggtaacaaattaccaactcaattgtttagacagctaggccttggggacccaagcagaccacctaaatttcttttttccctttctccccccaaaatcgtcagagaatgcaccaccaaagtaagcaccaaatccccatagctacagttccccgatgaggaaccaaattgggggcagcaaataaagcaggtgaaaactattaacaaatgaccctcatcgatcgagagcacatcatcgatcgtttcttgattaatggatcacataaactggatggatttagaggatttgggggtgtgattaccggctgcattgctggcagaagcgctgctcctggccggcgacgacgaccaccggcgtcttggcgtgggcctcgcagaccttgtggcggcggtggtagtcgcggcaccggctgaggtccgaccggcacccgtcgaccgagcacgcctccgcgccgccgccgccgccgccgcgcccgaccctccgcgcgccctcctcgtcgccggcgccgccgccgccggcctggcgcggacggagaagtcgtgcagcgcgccgccgccgccgccgccgcgccgccgcgcggcggcggcgtcgggggaagacgacgacgacgacggcccggcgaaggacagcatggtcgggccggcgtcgtccgccgccgccgccgccgccaccgccatgccccacgaagccgccttcgtcgccgccgccgcccactccat
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| CDS seq | atggagtgggcggcggcggcgacgaaggcggcttcgtggggcatggcggtggcggcggcggcggcggcggacgacgccggcccgaccatgctgtccttcgccgggccgtcgtcgtcgtcgtcttcccccgacgccgccgccgcgcggcggcgcggcggcggcggcggcggcgcgctgcacgacttctccgccggcggcggcggcgccggcgacgaggagggcgcgcggagggtcgggcgcggcggcggcggcggcggcgcggaggcgtgctcggtcgacgggtgccggtcggacctcagccggtgccgcgactaccaccgccgccacaaggtctgcgaggcccacgccaagacgccggtggtcgtcgtcgccggccaggagcagcgcttctgccagcaatgcagccgatttcacaatctggctgagtttgacgatgggaaaaaaagttgccggaaacggctggatggtcataacaggcgtcgaagaaagccacaacatgatgcattgaaccctaggagtttccttccgtatcatcaagcgaatcagttttcagtctacccacaaacatttccgatagctgatcagaacgccgacgccttaatgcgtccgcttgatcgtcaccctcccttctccatctcattctcagggaccttccgggaactgaagcagttcccctttatgcaagatggcgggagcggcctcggcgcagcgcgccacgatctcctgcggcccttctcttccccagaagatggagccaacattaccacaacccgcagcgcatgcaacggcgtccccacgggctggacccggagtgtgctctctctcttctgtcatcgtcgctgcatccctcccccgctgccggcatctccagcgcaacagctccaccgcagttcgccccctcttctttcagcagaatcgccgcctcgtcgcaagccgtaa
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| Protein seq | MEWAAAATKAASWGMAVAAAAAADDAGPTMLSFAGPSSSSSSPDAAAARRRGGGGGGALHDFSAGGGGAGDEEGARRVGRGGGGGGAEACSVDGCRSDLSRCRDYHRRHKVCEAHAKTPVVVVAGQEQRFCQQCSRFHNLAEFDDGKKSCRKRLDGHNRRRRKPQHDALNPRSFLPYHQANQFSVYPQTFPIADQNADALMRPLDRHPPFSISFSGTFRELKQFPFMQDGGSGLGAARHDLLRPFSSPEDGANITTTRSACNGVPTGWTRSVLSLFCHRRCIPPPLPASPAQQLHRSSPPLLSAESPPRRKP |
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| Function | Putative squamosa promoter-binding-like protein 19 [UniProtKB/Swiss-Prot:Q2R3Y1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_Ung0071020 | OsLiXu_Ung0071020.01 | ChrUN-Ctg534 | 336726 | 345971 | - | NAM | ||
| CDS seq | atggagtgggcggcggcggcgacgaaggcggcttcgtggggcatggcggtggcggcggcggcggcggcggacgacgccggcccgaccatgctgtccttcgccgggccgtcgtcgtcgtcgtcttcccccgacgccgccgccgcgcggcggcgcggcggcggcggcggcggcgcgctgcacgacttctccgccggcggcggcggcgccggcgacgaggagggcgcgcggagggtcgggcgcggcggcggcggcggcggcgcggaggcgtgctcggtcgacgggtgccggtcggacctcagccggtgccgcgactaccaccgccgccacaaggtctgcgaggcccacgccaagacgccggtggtcgtcgtcgccggccaggagcagcgcttctgccagcaatgcagccgatttcacaatctggctgagtttgacgatgggaaaaaaagttgccggaaacggctggatggtcataacaggcgtcgaagaaagccacaacatgatgcattgaaccctaggagtttccttccgtatcatcaagcgaatcagttttcagtctacccacaaacatttccgatagctgatcagaacgccgacgccttaatgcgtccgcttgatcgtcaccctcccttctccatctcattctcagggaccttccgggaactgaagcagttcccctttatgcaagatggcgggagcggcctcggcgcagcgcgccacgatctcctgcggcccttctcttccccagaagatggagccaacattaccacaacccgcagcgcatgcaacggcgtccccacgggctggacccggagtgtgctctctctcttctgtcatcgtcgctgcatccctcccccgctgccggcatctccagcgcaacagctccaccgcagttcgccccctcttctttcagcagaatcgccgcctcgtcgcaagccgtaa
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| Protein seq | MEWAAAATKAASWGMAVAAAAAADDAGPTMLSFAGPSSSSSSPDAAAARRRGGGGGGALHDFSAGGGGAGDEEGARRVGRGGGGGGAEACSVDGCRSDLSRCRDYHRRHKVCEAHAKTPVVVVAGQEQRFCQQCSRFHNLAEFDDGKKSCRKRLDGHNRRRRKPQHDALNPRSFLPYHQANQFSVYPQTFPIADQNADALMRPLDRHPPFSISFSGTFRELKQFPFMQDGGSGLGAARHDLLRPFSSPEDGANITTTRSACNGVPTGWTRSVLSLFCHRRCIPPPLPASPAQQLHRSSPPLLSAESPPRRKP
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0496600 | SBH | 0.236047 | 0.228862 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g30370 | SBH | 0.113479 | 0.126997 | 0.120061 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0496600 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0014710 | SBH | 0.034144 | 7.546036 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0014650 | SBH | 0.051911 | 9.057380 | 0.572978 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0014590 | SBH | 0.0 | 0.674693 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0014380 | SBH | 0.0 | 0.224485 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0014680 | SBH | 1.586116 | 7.538681 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0277400 | SBH | 0.4702345 | 5.151277 | 1.507094 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0014930 | SBH | 0.0 | 0.703191 | 0.093580 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0290500 | SBH | 0.480831 | 1.942346 | 2.205211 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0014910 | SBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0014850 | SBH | 0.136992 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0014510 | SBH | 0.0 | 9.271322 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0014320 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0014630 | SBH | 0.000000 | 5.206475 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G014430 | SBH | 0.0 | 0.000000 | 0.268211 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0014710 | SBH | 0.358407 | 0.0 | 3.152267 |
