Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_Ung0068500 | OGI:01044490 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | ChrUN-Ctg511:136355-142645 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | cacaggcataaccaaccattttaaagaggcaaaggcagtaaatacaggacagtatgtatagctaatgatcccaaaaaggtaataagcatcgagggacggataccgggactctacagctaaggcagtgaatagtgcatagataggcatggaggttaatcggtgtctgcatcagtagctacatatggaagtgccataatagagtgataagtgcagtgcccacagcgtgtctatagtgcacaggggtaacgattataacatgggcagtatattacataaacagcagactgtatggagacaccgagctttgccgctaacaaaagcatgagatcagactacattgatagcatattcagaagatatcgacggttgctcctcgatgggtagtcttaaaaatggaaaatgcatactgtgtggagctttatgccattgttgagggcgaaatttgtccatctgttttttaggttgcaacgatggtctgtcgatctgtgaaggatcatgctggttgaagggctcccagtatctgcgcttagatatcatctgcaaacttgggtttggtgttcgctgcaagaaagtattctataagcattttcaatgcgtatgaaagaaaccagctattaatactatagaaaatgacaatgtggaatggttcgatttgtagaagtgcctctggtatttcttgtatggtgtatcttaacatggagtgagaatagatgcatcagcactaaaataagaaggtaaatatattttaggcggtagtgtgcttaggtcctgaagataggaccaaaattaatgcgagtggatcagttgtggagcggtgtggttcaaagtaagaacagtaacataggctgatgaccggtgttataataaacgcaaatttgtttattgatccacatgatgaagatcagctaaggtgcctagagcattacacagatggaaagatagccatctgatggaatcaaaggcggagcatacatgcatagacaggtatagaactgcagaagtggtatgataggttgatctgtacgattaaaagatagcgttgttgcgtggcgtcatgttatttgcacgaaccgaaatttcgttaggattaaaagaggagcgtaattgaaagtaaagacatggatagtgagttgacctgatttgttgatcctgtgattgataggagacgatgactctggaccatgactggatgaatggcctgaaatagaaatatggagcatgctagtaagtaaagtgttatcctaaatgatacggagtatggtgtaactaatggaatagatgagttcctagctaactggttcgagattacaatcatattatttctgatgaaaggtgtttgtgtgatacgaatacctttgctgttttggtgtatagacctttttgctttgaacctgaggtgttcttctgatgaagcaggcatgggaagcttgggaactccatgcttgtcaagtatgaggagatcaagtgttgatggagaagaaacactgaatctaatacattgtccaacgcgtaagccagtaagctcaacaaattttttccaacctttgcagatatagaatgactggcctcttttttcgagcctaacattcactggtttgttatggcgtgtgaccaaggttaaatattttccatggtatccattgcagctggctacaatctcaggtgggagagcctataaaaaattcccccattagtaacagataggatattacgttgatgcaggcttggaaggtatttgtgtgtacttacaaaatcttcttcatctaactgggtgaatctcagcatagcagatgttcgagccatcatagagaagctggaatataggttgtttgtatgtcagtggttgaacaaagctttgctcttttagaatggagacagatctaaaatcagaggtggtattactgtaggtgcatataaaaaccaattgtttttggtgaaagcaaatatgtacaacgtaagatagtaagctatatgataagacgataaaagagtggtttctagtgctctaataagatatagtaagaatataacaagatgataatggtaagaataaaattacacaataaagaggagcaaataatggtgcacaataaatacagcatttaatattgccttttaaagaaatatggaatttttttgtattcggaactgttttctattcctaaagagatatggcaacatttagtatttaccactgtgatggtataataccagcggtgcaggtgcagaaggtattcccaaatgctgatggagtggaaactatagtgttgcatggatccatgagcatccatgcaactctatccacctaaaatggaacacatgatctaaaagtaggctgagggctataaactgtacttcaaagtggactaatatagcttctgtgtgtgagcaaggccacatcaattattgttactgctgtaccatcggtataaaattagaagtttgcatggatcattttgaaatcaaataactttctagccttctcaaactcggttccatgaaagctcaaaagaaaggaagagtgtatctaactgtatatgcacaatttaggaaattagctaggaaacacaaagggaccgaaaaaatgtacagctgattccatataaaaatatagatatatgggtacatcacctggtagagaaagacgtgcgcgcagcgattccaaggcccaagaatagaagttgttttacatcctgtgccataaaaagcaaaagttataatttacccgtaaattaaaaggcaagaatacaaaagaggaaaaagaagaataacaaactatagttgcgttaacatcagagactatgaggtagggttctcatctatagctctgatccgagaatggtggatctgtaagtgagaaaagaaaagagaggtattgcagagatagcttaagaagcgatctattagggttgactactgattttggccgtgctgctatgggtattgtggctctaaggaaaataaaacgatggatccgcgcggacagatctgctgacacagcgacggtgctcaggaatgcctcgtctcccaatcctacgtgttgctgccccgttcttgatatcatccttctcctaccctctgttttccctagcactgaggccacgcgccgctggtccgcgcattcgcctcacactggcgtggtcattgccgttgccgtggtcgcgtccacctccgccgcggcggccgcatctacctgccctaaaaaaccctagctgggaccgtccattaccctgctaagggataagtttacgtgattccctaaacatgtgcggtctatcttgtagaaagatccatgaggcatctcgttgtttaccatgtttaaactaacctttacggctttaccttgacaacaggctttgcaaatggttttgaatagcagccatcaggtgggtgaccttgttaagaatcgaagccataactgaaaatgattgaattcataactggactgcatcttctagttcccggaataagaagtgacaaccagccagaatgctacgtttctgaaaaaattcaagcaactcatcagaatccttataatttagtttcccttgttcagcctctatcctgtaccactttagttcgatttcaaatacagccctattggagtttttcacgaagaaatcagcaagaagggaggaatatacctgataatatcatctagcagattaagatgattgcagacataatatgggcctattccatgtttattgtttctgtacaacacgaaatcagtctactatctaaaccaaagaaactatagacatgttttacattgaggctccaaacctgtagttggtatcagcatggcaacataggcttcccattcacagtatgtacattaacaggaagaggcaacaggaaaggaagttaccattttataagaaatctcagctatcttattcataggctttctgagattcgatttatatatacttaatttataactgcttgtattagattacttcacatgtaggctgtacttgacaaatgggcatcaagtctatttagggtagctttctatgcatgcttacacaatagttctgactgaatctgagttcttttaaatatttcacatttttccatgtcaaatctgaagtaatcaatatggctataggtataaaaaataaacattatgtagggcaatctgaaagatcatgctacaacagagaaaaagaagtacaaaaaatgattttgagaagcataactgctattaccttgccaggttgctcatacaatgggctaagatcagaaaatagtgatggtactccctacaaaatatgagacatgttaatcaattgcaacaaagagaaacattatgctgcctgaaaaattgaaaaagggtataaggtatacactaagaaaaacaaatggtaaccataaatgagactccttaaatagaaactccttaaatagaaacttaaagagctactgaaagagctgctgaataccttggttaataggggtctgacataattatctgctgcctcctgaaatttctctcctcctaggaaatcaaggggcatgcgctgttgcaattagagacaattttagatccacagcttctacagtgcatgccccactcaccatatatatggatagacaacttgggattcagcaaattagtattgcaatatagaataaataaataccacatatatcaagatactgttgtgtgcccggagagctcaacaattaacatgaaggaacaaagaaaaaataaaaacagtttgaggtagtttaccttaacagcagatgaccaaccatattcttttttaagtgagatatacaatgtgcataatcggtcaacattagtgcaatattgaccattctctgagtatagaccaaggcacttttgaacagctatgaaatacctgtgtaaaaccagtgaaaataaattaactcctagagtattatcaagaaggggtacaatgtaagtcagaagagtgctatatacgcaaccctgaatagaagggaattccaaattgagttgatattagcatctcatatgccagtgtcctgcaattgttctgcaacagctacactctacctaaatgttctcatgaagccaccatgttttctagcttctgcatctatagctctaccaagtatctcaccagatgttgaactgtcaaataagattatcgaatatcccaccagatgttgcatctatagctgctaacatctatagctctatcactgatgatgtcgagctgacaataattgattaatgaaaatttcagatttagtgagctgaagctattgctatgctatattgctgaataataatggtaagttggttagataaactctccctttgctattatccacaatagattgcccaaaatgttttcttgtactaacctataaccaataagaaatgataattcattttcttcctcaaaccctcttctctcaccttttgtaaacacagtaacaatgtcatgtaacatgttttttctctgccaacaaagatcactatgcaaaagaatgacacctcgagaaagcggtgcgataatgatttccttgagcttggctgctaacatctcctccctggatagcctgggactacagcagctcgagcaagaggctggccatccaggaatcaacacatgctcacataagccactggcagtgttgcttccattttgttctaggactactacatgcttacaggagcatagagccctgataacttggcaaagacgaaccagaattttaaacagttagaaaatgtcatacaacataagacaatatgcacaatttatcttatgaatactgaacatgtgtacctaattgaagaaatggcacaaagaaaatgtcacaacctttttgctgtgatggaggaggttcttgagtattccaagcagctgcatgatgatgttcagtattcatacgataaattcaacctttgaaagtaagggccccttccacatctgttgcggggaagggaggcaacagattggccgaaggacgccttgcaccgtggatctgctccatgggaaggaagagacggcggcgaccagaggatgcccgacggcgcggcagcgggggaagctagaccgagaagagtgaagacgtgttcacgtgcacagacggattgtgcgatggcggccagaggcccagagatgggggagtaagaggaggcggcggcggatgtgagggcctgtcggcctggtcaagccctcacaccgactgcatggaggtcggatccgcacgcggcggcggtgctccgtgatggcgacggcagcgggggacggcggtgctcggcgacggcggagcgaggcgaaaagg
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| CDS seq | atgcagctgcttggaatactcaagaacctcctccatcacagcaaaaagggctctatgctcctgtatttcatagctgttcaaaagtgccttggtctatactcagagaatggtcaatattgcactaatgttgaccgattatgcacattgtatatctcacttaaaaaagaatatggttggtcatctgctgttaagcgcatgccccttgatttcctaggaggagagaaatttcaggaggcagcagataattatgtcagacccctattaaccaagggagtaccatcactattttctgatcttagcccattgtatgagcaacctggcaaggtatattcctcccttcttgctgatttcttcgtgaaaaactccaatagggctgtatttgaaatcgaactaaagtggtacaggatagaggctgaacaagggaaactaaattataaggattctgatgagttgcttgaattttttcagaaacgtcacccacctgatggctgctattcaaaaccatttgcaaagcctgttgtcaaggatgtaaaacaacttctattcttgggccttggaatcgctgcgcgcacgtctttctctaccagcttctctatgatggctcgaacatctgctatgctgagattcacccagttagatgaagaagattttgctctcccacctgagattgtagccagctgcaatggataccatggaaaatatttaaccttggtcacacgccataacaaaccagtgaatgttaggctcgaaaaaagaggccagtcattctatatctgcaaaggttggaaaaaatttgttgagcttactggcttacgcgttggacaatgtattagattcagtgtttcttctccatcaacacttgatctcctcatacttgacaagcatggagttcccaagcttcccatgcctgcttcatcagaagaacacctcaggttcaaagcaaaaaggtctatacaccaaaacagcaaaggccattcatccagtcatggtccagagtcatcgtctcctatcaatcacaggatcaacaaatcagttctatacctgtctatgcatcgaacaccaaacccaagtttgcagatgatatctaagcgcagatactgggagcccttcaaccagcatgatccttcacagatcgacagaccatcgttgcaacctaaaaaacagatggacaaatttcgccctcaacaatggcataaagctccacacagtatgcattttccatttttaagactacccatcgaggagcaaccgtcgatatcttctgaatatgctatcaatgtagtctga
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| Protein seq | MQLLGILKNLLHHSKKGSMLLYFIAVQKCLGLYSENGQYCTNVDRLCTLYISLKKEYGWSSAVKRMPLDFLGGEKFQEAADNYVRPLLTKGVPSLFSDLSPLYEQPGKVYSSLLADFFVKNSNRAVFEIELKWYRIEAEQGKLNYKDSDELLEFFQKRHPPDGCYSKPFAKPVVKDVKQLLFLGLGIAARTSFSTSFSMMARTSAMLRFTQLDEEDFALPPEIVASCNGYHGKYLTLVTRHNKPVNVRLEKRGQSFYICKGWKKFVELTGLRVGQCIRFSVSSPSTLDLLILDKHGVPKLPMPASSEEHLRFKAKRSIHQNSKGHSSSHGPESSSPINHRINKSVLYLSMHRTPNPSLQMISKRRYWEPFNQHDPSQIDRPSLQPKKQMDKFRPQQWHKAPHSMHFPFLRLPIEEQPSISSEYAINVV |
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| Function | B3 domain-containing protein Os10g0323000 [UniProtKB/Swiss-Prot:Q7XFU9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_Ung0068500 | OsLiXu_Ung0068500.01 | ChrUN-Ctg511 | 136355 | 142645 | - | NAM | ||
| CDS seq | atgcagctgcttggaatactcaagaacctcctccatcacagcaaaaagggctctatgctcctttcaacatctggtgagatacttggtagagctatagatgcagaagctagaaaacatggtggcttcatgagaacatttaggtatttcatagctgttcaaaagtgccttggtctatactcagagaatggtcaatattgcactaatgttgaccgattatgcacattgtatatctcacttaaaaaagaatatggttggtcatctgctgttaagcgcatgccccttgatttcctaggaggagagaaatttcaggaggcagcagataattatgtcagacccctattaaccaagggagtaccatcactattttctgatcttagcccattgtatgagcaacctggcaaggtatattcctcccttcttgctgatttcttcgtgaaaaactccaatagggctgtatttgaaatcgaactaaagtggtacaggatagaggctgaacaagggaaactaaattataaggattctgatgagttgcttgaattttttcagaaacgtcacccacctgatggctgctattcaaaaccatttgcaaagcctgttgtcaaggatgtaaaacaacttctattcttgggccttggaatcgctgcgcgcacgtctttctctaccagcttctctatgatggctcgaacatctgctatgctgagattcacccagttagatgaagaagattttgctctcccacctgagattgtagccagctgcaatggataccatggaaaatatttaaccttggtcacacgccataacaaaccagtgaatgttaggctcgaaaaaagaggccagtcattctatatctgcaaaggttggaaaaaatttgttgagcttactggcttacgcgttggacaatgtattagattcagtgtttcttctccatcaacacttgatctcctcatacttgacaagcatggagttcccaagcttcccatgcctgcttcatcagaagaacacctcaggttcaaagcaaaaaggtctatacaccaaaacagcaaaggccattcatccagtcatggtccagagtcatcgtctcctatcaatcacaggatcaacaaatcagcgaacaccaaacccaagtttgcagatgatatctaa
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| Protein seq | MQLLGILKNLLHHSKKGSMLLSTSGEILGRAIDAEARKHGGFMRTFRYFIAVQKCLGLYSENGQYCTNVDRLCTLYISLKKEYGWSSAVKRMPLDFLGGEKFQEAADNYVRPLLTKGVPSLFSDLSPLYEQPGKVYSSLLADFFVKNSNRAVFEIELKWYRIEAEQGKLNYKDSDELLEFFQKRHPPDGCYSKPFAKPVVKDVKQLLFLGLGIAARTSFSTSFSMMARTSAMLRFTQLDEEDFALPPEIVASCNGYHGKYLTLVTRHNKPVNVRLEKRGQSFYICKGWKKFVELTGLRVGQCIRFSVSSPSTLDLLILDKHGVPKLPMPASSEEHLRFKAKRSIHQNSKGHSSSHGPESSSPINHRINKSANTKPKFADDI
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_Ung0068500 | OsLiXu_Ung0068500.02 | ChrUN-Ctg511 | 136355 | 142645 | - | NAM | ||
| CDS seq | atgcagctgcttggaatactcaagaacctcctccatcacagcaaaaagggctctatgctcctgtatttcatagctgttcaaaagtgccttggtctatactcagagaatggtcaatattgcactaatgttgaccgattatgcacattgtatatctcacttaaaaaagaatatggttggtcatctgctgttaagcgcatgccccttgatttcctaggaggagagaaatttcaggaggcagcagataattatgtcagacccctattaaccaagggagtaccatcactattttctgatcttagcccattgtatgagcaacctggcaaggtatattcctcccttcttgctgatttcttcgtgaaaaactccaatagggctgtatttgaaatcgaactaaagtggtacaggatagaggctgaacaagggaaactaaattataaggattctgatgagttgcttgaattttttcagaaacgtcacccacctgatggctgctattcaaaaccatttgcaaagcctgttgtcaaggatgtaaaacaacttctattcttgggccttggaatcgctgcgcgcacgtctttctctaccagcttctctatgatggctcgaacatctgctatgctgagattcacccagttagatgaagaagattttgctctcccacctgagattgtagccagctgcaatggataccatggaaaatatttaaccttggtcacacgccataacaaaccagtgaatgttaggctcgaaaaaagaggccagtcattctatatctgcaaaggttggaaaaaatttgttgagcttactggcttacgcgttggacaatgtattagattcagtgtttcttctccatcaacacttgatctcctcatacttgacaagcatggagttcccaagcttcccatgcctgcttcatcagaagaacacctcaggttcaaagcaaaaaggtctatacaccaaaacagcaaaggccattcatccagtcatggtccagagtcatcgtctcctatcaatcacaggatcaacaaatcagttctatacctgtctatgcatcgaacaccaaacccaagtttgcagatgatatctaagcgcagatactgggagcccttcaaccagcatgatccttcacagatcgacagaccatcgttgcaacctaaaaaacagatggacaaatttcgccctcaacaatggcataaagctccacacagtatgcattttccatttttaagactacccatcgaggagcaaccgtcgatatcttctgaatatgctatcaatgtagtctga
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| Protein seq | MQLLGILKNLLHHSKKGSMLLYFIAVQKCLGLYSENGQYCTNVDRLCTLYISLKKEYGWSSAVKRMPLDFLGGEKFQEAADNYVRPLLTKGVPSLFSDLSPLYEQPGKVYSSLLADFFVKNSNRAVFEIELKWYRIEAEQGKLNYKDSDELLEFFQKRHPPDGCYSKPFAKPVVKDVKQLLFLGLGIAARTSFSTSFSMMARTSAMLRFTQLDEEDFALPPEIVASCNGYHGKYLTLVTRHNKPVNVRLEKRGQSFYICKGWKKFVELTGLRVGQCIRFSVSSPSTLDLLILDKHGVPKLPMPASSEEHLRFKAKRSIHQNSKGHSSSHGPESSSPINHRINKSVLYLSMHRTPNPSLQMISKRRYWEPFNQHDPSQIDRPSLQPKKQMDKFRPQQWHKAPHSMHFPFLRLPIEEQPSISSEYAINVV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| SE | ChrUN-Ctg511 | 141225 | 142026 | - | OsLiXu_Ung0068500.01 | OsLiXu_Ung0068500.01,OsLiXu_Ung0068500.02 | All |
| SE | ChrUN-Ctg511 | 136915 | 137490 | - | OsLiXu_Ung0068500.02 | OsLiXu_Ung0068500.01,OsLiXu_Ung0068500.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.0 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0011650 | SBH | 1.601796 | 3.045177 | 10.002102 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0011340 | SBH | 0.392173 | 0.159919 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0011760 | SBH | 11.183613 | 6.418734 | 16.585363 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0186200 | SBH | 4.9069885 | 14.5777065 | 8.512428 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0011620 | SBH | 1.075955 | 0.206617 | 2.476452 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0011750 | SBH | 0.427724 | 0.467581 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_Ung0001430 | RBH | 1.722450 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0011510 | SBH | 15.389654 | 21.339647 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0011350 | RBH | 1.238073 | 0.0 | 0.586129 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0011580 | SBH | 0.862745 | 5.257153 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G011490 | SBH | 1.234832 | 2.386131 | 1.983509 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
