Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_Ung0062170 | OGI:10048540 | 10/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | ChrUN-Ctg467:146008-146817 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGTCCTGCCGTTCTTATCTTGACCAAGTACCTACTGATAGGTACTCTAATAGGGTTACACTACAATTAGGCCTCTTGAGAGCCGGGAATAGTAATGTGCAACAATTAGGAATCACCAGAGCTGGAAATTCCAATGCTTATGATTATACGGAGGTACATTTCCAATGCGTTAGCTTGCCTCTTCTTTGCAAATGGCCCTCGCCTGATATGTTTCCATTAGAAACATGAAACCATATATTTGACTGTTGCATTATGTCTATTTTCTTCCATGATGGTTCAGACGTCTGAAAAAAGGACAAAAATATTCTAGAATATGTCATGGTGATCCAAATATATCCTTCTGTCTTGTGCCCACTCTAATATCTATCGTTGGTAACACTATTCAATTGTTACCATGTTGTTGCAAACCCTAGATTCAGTTATTCAGCTGTTCTCTGCTGCTGTTGCTTACCAGTTTTCTTAGTTGGGTGTTGATCTTTTCTCATTTTTTATTTCCTTGTTTCCTGGTTCACCTGCTGCCTCTCTGATGCATCTGAATGTATATTTTTGTTCTCTTCAGTGCTTAATAGATTTAAATTTCATTCTTTTCAGGCTGCGGAGCTGATCCATGGACGTGAGGATTACCGAAGACTGTCAGGTCTCACTGGGTATGGCTTACGCAGACTGAATTTTTACAGGACACAAACATGAATTTTGTCCTCATAATCATTGAGTGATGATCTCTTTGCAGGTATCCAGGTGGCTCTGTCGAATTGTGGATTCCAAATAGTTAACTGGAGTCTGTCATTGGTGTTGGTGGTGTCAATCTAG
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| CDS seq | ATGTCCTGCCGTTCTTATCTTGACCAAGTACCTACTGATAGGTACTCTAATAGGGTTACACTACAATTAGGCCTCTTGAGAGCCGGGAATAGTAATGTGCAACAATTAGGAATCACCAGAGCTGGAAATTCCAATGCTTATGATTATACGGAGGCTGCGGAGCTGATCCATGGACGTGAGGATTACCGAAGACTGTCAGGTATCCAGGTGGCTCTGTCGAATTGTGGATTCCAAATAGTTAACTGGAGTCTGTCATTGGTGTTGGTGGTGTCAATCTAG |
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| Protein seq | MSCRSYLDQVPTDRYSNRVTLQLGLLRAGNSNVQQLGITRAGNSNAYDYTEAAELIHGREDYRRLSGIQVALSNCGFQIVNWSLSLVLVVSI |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_Ung0062170 | OsLiXu_Ung0062170.01 | ChrUN-Ctg467 | 146008 | 146817 | + | NAM | ||
| CDS seq | ATGTCCTGCCGTTCTTATCTTGACCAAGTACCTACTGATAGGTACTCTAATAGGGTTACACTACAATTAGGCCTCTTGAGAGCCGGGAATAGTAATGTGCAACAATTAGGAATCACCAGAGCTGGAAATTCCAATGCTTATGATTATACGGAGGCTGCGGAGCTGATCCATGGACGTGAGGATTACCGAAGACTGTCAGGTATCCAGGTGGCTCTGTCGAATTGTGGATTCCAAATAGTTAACTGGAGTCTGTCATTGGTGTTGGTGGTGTCAATCTAG
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| Protein seq | MSCRSYLDQVPTDRYSNRVTLQLGLLRAGNSNVQQLGITRAGNSNAYDYTEAAELIHGREDYRRLSGIQVALSNCGFQIVNWSLSLVLVVSI |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0495000 | SBH | 5.097850 | 3.030061 | 7.637742 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g35220 | SBH | 3.408226 | 2.150167 | 2.052179 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0495000 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0016100 | SBH | 0.646481 | 4.097675 | 5.859189 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0015730 | SBH | 0.000000 | 3.826310 | 2.453657 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0016260 | RBH | 0.000000 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0016040 | SBH | 2.907954 | 13.057494 | 14.280411 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0015960 | SBH | 0.0 | 0.000000 | 0.242528 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0337200 | SBH | 0.298073 | 0.388959 | 1.5114005 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0015730 | SBH | 0.000000 | 0.461951 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0015610 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0016120 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0016260 | RBH | 0.000000 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0015710 | SBH | 2.463494 | 59.476727 | 12.754452 |
