Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_Ung0061860 | OGI:99058530 | 1/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | ChrUN-Ctg466:80040-82207 | ||||||||
| Gene Symbol | PPR454, PPR10, PPR2 | ||||||||||
| DNA seq | TCATTGATCATCTGCTTTAAGGTAAGCACTGCATCGTATACTCTGCCTAGCTTGCAGAGTACATCTATGATTGTTCTGTAGTTCACTGCATTCGGACTCAATCCTTGCTGCCTCATTTTGCTGAATACAAGCATTGCCTCATCTACTTTTTCTTGTTTAGCGTATGCACATATTAGAATGTTGAATACATGATGATTAGGTTGGATACCGTTCCATACCATCAAATCCAAGAGATCATGCATCTCAACAAGGGCTCCTTTGGTAGCATACCCCTGAAGCAGGGTACAATAGGTAGTAATATCAGGCTTTAGGCCCCACTTGGTCATAGAATCGAAAATCTTTCTAGCTTCCGTGCATCTTCTGTTCTTGCAAAGATAATCCATCAGCAAGTTACAAGTAACAACATCTGGTTCGACACCATCACTGCACATCTTTTTGAGAAATCCAATAGCCTCTGTCAACTGCCCTGAAGAGCAATATCCGTGCACAATACTATTATATGTCCTGCAATTAGGCATGACACCATTCTTAACCATGGTGTTAAGTACCTCCATGGCCTTGTCCATAGCTTGAGCCTTGCATAAGGCAGCGATAATAGAGCTGTAAGTCACAACATCTGGCAAAATCCCCTGGTCAAACATTTCATGGTATGTAGCGTAAGCTTTGTCCGGATCCCCCTCTTTGAAGAAGCCATTGATGACGGTGTTGTACAACACCACATCAGGTGGGCAGTCACCTCCATCATCAGGCATCATTTGGAGCAGCTCGAGAGCTTCTTGGCTTCTGTTCTCATCACACAGACCCTTGAGAAGAATGGTGCAGGAGAAGACATTTGGTATGCAGCCGAGCTGGGTCATTCTGCGGAGCACTATGTCCATTGCGTCGCTCGTCCTCTTGTCGGCACAGAGGCCCTTGAGCAGAGGTGTGAAGGTGATGGCTTCCACTCTAAATCCCTTCTTAATGACATTGTCCAAGCGGCCCGCGCGGCAGCAGCAACCGATGAGAACGCTGTAGGTGTACAAGTTGGGAGTTACCTCGTGGGCGCCGGCTCGGGCCATGCGGTTGTAGCGGGACACGGCGGCCGTGGGGCTGTGACGCGCGACGTCGTCGAGGGCGCGGTTCAAGCCGTAGATCGTGGCGCCCCTGCCACGCCGGAGCAATTCGTCGAACACGTGGCGTGCGTCCTCGGCGCCATTGCCCCCCGCGCGGCCCCCTCGCCCTTGGATCGAGCCCTCCGAGCCAACAGCGCGGGAAGCGGCGCGGCGCGCCATGCCCGCCCTAGCTGACAGGTGCAGCAGCAGCAGCACCGGCGGCTGCGGAGAAAATGGGGATTATACCATCCTCAAAACAGGGCTTTGCTGAAATGCCATCCTACAATTGGGATTCGCCCAAATACCACTTTCAACTGAGCCCAACCCGCTGAAATGCCATCCCAAATCATTTTCATCAAAAATAAAAGATTTTACTCTATTTTTCACATGAGTTGACGAAATTACCCCTCAGTCAATTTCATCGTTAGAAATCAATCGGCTGGGAGAGCGAGACGCATAGGGTTAGGGTTTCGTCCGCCGCGCCGATCTGGGCGCCGCCGCGCGACCTCCCTAGCGCCGCCGCGCTGCCCTGCCCTTCCCTCCAGCAACCGCTCCGCCGTGCCCTCCCCTCGCGACGACGCGGCGCGCCTCCCCTCGCGCCGCCACGCCGCGTTGCGGCCGTCCCGTGGCAGCGACCTCTCCCTTGCGCCGCCGCGCCGCCGGGAGCTTCGCCGGCTGGGATGGTGCCGGCAGGTCAGAGCTCCCACACAGCTGTGACCGGCATCCCGGCCGCGAGGCAACACAAGCAGATGCGGGGAGCGCGAGCTGCAATGGCGCAGGCCATGGTTCCGAGGAGCTCTCATACAGCAGTACTGTCCACCGTGAGGCCCCACGCGCCATTGTCGAACACTAGGGGAGCTCCGCCAATGGCAATGTCGCCGGGCGTTCCGACGATCCCAACTCCGACCGGGAATCCTCACGCGTCGCAGCAACAGAGAGCAGCAATGGCGAGGCACCCAGCTCCGACGAGCGCTCGTGCAATCGGAGCCCCCATCCAGCCCACGGAGCCTCATGCGCCACTGCCGAACACCGGGGGAGAAGGAGCACCACCACCAGCACGCACCGTGCCACCGCCAT
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| CDS seq | ATGCCTGATGATGGAGGTGACTGCCCACCTGATGTGGTGTTGTACAACACCGTCATCAATGGCTTCTTCAAAGAGGGGGATCCGGACAAAGCTTACGCTACATACCATGAAATGTTTGACCAGGGGATTTTGCCAGATGTTGTGACTTACAGCTCTATTATCGCTGCCTTATGCAAGGCTCAAGCTATGGACAAGGCCATGGAGGTACTTAACACCATGGTTAAGAATGGTGTCATGCCTAATTGCAGGACATATAATAGTATTGTGCACGGATATTGCTCTTCAGGGCAGTTGACAGAGGCTATTGGATTTCTCAAAAAGATGTGCAGTGATGGTGTCGAACCAGATGTTGTTACTTGTAACTTGCTGATGGATTATCTTTGCAAGAACAGAAGATGCACGGAAGCTAGAAAGATTTTCGATTCTATGACCAAGTGGGGCCTAAAGCCTGATATTACTACCTATTGTACCCTGCTTCAGGGGTATGCTACCAAAGGAGCCCTTGTTGAGATGCATGATCTCTTGGATTTGATGCAAAATGAGGCAGCAAGGATTGAGTCCGAATGCAGTGAACTACAGAACAATCATAGATGTACTCTGCAAGCTAGGCAGAGTATACGATGCAGTGCTTACCTTAAAGCAGATGATCAATGA
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| Protein seq | MPDDGGDCPPDVVLYNTVINGFFKEGDPDKAYATYHEMFDQGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPNCRTYNSIVHGYCSSGQLTEAIGFLKKMCSDGVEPDVVTCNLLMDYLCKNRRCTEARKIFDSMTKWGLKPDITTYCTLLQGYATKGALVEMHDLLDLMQNEAARIESECSELQNNHRCTLQARQSIRCSAYLKADDQ |
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| Function | Protein Rf1, mitochondrial [UniProtKB/Swiss-Prot:Q76C99] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_Ung0061860 | OsLiXu_Ung0061860.01 | ChrUN-Ctg466 | 80040 | 82207 | - | NAM | ||
| CDS seq | ATGCCTGATGATGGAGGTGACTGCCCACCTGATGTGGTGTTGTACAACACCGTCATCAATGGCTTCTTCAAAGAGGGGGATCCGGACAAAGCTTACGCTACATACCATGAAATGTTTGACCAGGGGATTTTGCCAGATGTTGTGACTTACAGCTCTATTATCGCTGCCTTATGCAAGGCTCAAGCTATGGACAAGGCCATGGAGGTACTTAACACCATGGTTAAGAATGGTGTCATGCCTAATTGCAGGACATATAATAGTATTGTGCACGGATATTGCTCTTCAGGGCAGTTGACAGAGGCTATTGGATTTCTCAAAAAGATGTGCAGTGATGGTGTCGAACCAGATGTTGTTACTTGTAACTTGCTGATGGATTATCTTTGCAAGAACAGAAGATGCACGGAAGCTAGAAAGATTTTCGATTCTATGACCAAGTGGGGCCTAAAGCCTGATATTACTACCTATTGTACCCTGCTTCAGGGGTATGCTACCAAAGGAGCCCTTGTTGAGATGCATGATCTCTTGGATTTGATGCAAAATGAGGCAGCAAGGATTGAGTCCGAATGCAGTGAACTACAGAACAATCATAGATGTACTCTGCAAGCTAGGCAGAGTATACGATGCAGTGCTTACCTTAAAGCAGATGATCAATGA
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| Protein seq | MPDDGGDCPPDVVLYNTVINGFFKEGDPDKAYATYHEMFDQGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPNCRTYNSIVHGYCSSGQLTEAIGFLKKMCSDGVEPDVVTCNLLMDYLCKNRRCTEARKIFDSMTKWGLKPDITTYCTLLQGYATKGALVEMHDLLDLMQNEAARIESECSELQNNHRCTLQARQSIRCSAYLKADDQ
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0495200 | SBH | 0.658743 | 0.419048 | 0.616906 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g35230 | SBH | 0.199640 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0495100 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0015870 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0016130 | SBH | 0.163027 | 0.000000 | 0.213683 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0015520 | SBH | 0.610800 | 1.212539 | 1.200322 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0015930 | SBH | 0.068308 | 0.008847 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0015860 | SBH | 0.0 | 0.000000 | 3.064457 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0312500 | SBH | 1.4509705 | 1.9705075 | 1.5231955 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0015740 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0334300 | SBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0015520 | SBH | 0.020425 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0015400 | SBH | 0.067456 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0015850 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0015640 | SBH | 0.257789 | 0.0 | 0.073470 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0016060 | SBH | 0.058218 | 0.850175 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G015670 | SBH | 0.283203 | 1.667709 | 1.056783 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0015820 | SBH | 0.066264 | 0.0 | 1.332065 |
